Array 1 26517-24699 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAJW01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22965, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26516 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 26450 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 26384 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 26318 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 26252 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 26186 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 26120 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 26054 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 25988 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 25922 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 25856 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 25790 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 25724 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 25658 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 25592 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 25526 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 25460 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 25394 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 25328 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 25262 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 25196 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 25130 36 100.0 30 .................................... AGCCAGATTTCGGAAAACCCTGCGGGCTTT 25064 36 100.0 30 .................................... GACATCAAACTGGGTATAGCGGTTGTGGCT 24998 36 100.0 30 .................................... ACGCCGAACTCGTCCTTCACGCGGCGGACA 24932 36 100.0 30 .................................... AAATGCGTGTGGGTGTGGTCGTCGATTTGT 24866 36 100.0 30 .................................... AAATTTGAAAATTTCTATATTTTGGTTGTG 24800 36 100.0 30 .................................... AAACCAAAAAACGCATCTTCCTGATGGCGC 24734 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //