Array 1 1-1285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAP010000032.1 Pseudomonas sp. BIS contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 25 89.3 32 ---......................... TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 58 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 118 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 178 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 238 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 298 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 358 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 418 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 478 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 538 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 598 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 658 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 718 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 778 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 838 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 898 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 958 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 1018 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 1078 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 1138 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 1198 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 1258 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.4 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11098-9810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAP010000032.1 Pseudomonas sp. BIS contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11097 28 100.0 32 ............................ CCGAGTGGGCCGAGCGCGCCATCGATGGTACT 11037 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 10977 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 10917 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 10857 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 10797 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 10737 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 10677 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 10617 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 10557 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 10497 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 10437 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 10377 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 10317 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 10257 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 10197 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 10137 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 10077 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 10017 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 9957 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 9897 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 9837 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //