Array 1 108587-106683 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJJ01000011.1 Salmonella sp. S135_54728 NODE_11_length_154345_cov_143.069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108586 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 108525 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 108464 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 108403 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 108342 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 108281 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 108220 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 108158 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 108097 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 108036 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107975 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107914 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107853 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107792 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107731 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107670 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107609 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107548 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107487 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107426 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107364 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107261 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107200 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107139 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107078 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107017 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106956 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106895 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106834 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106773 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106712 29 96.6 0 A............................ | A [106685] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126150-124718 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJJ01000011.1 Salmonella sp. S135_54728 NODE_11_length_154345_cov_143.069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126149 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 126088 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 126027 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125966 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125905 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125844 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125783 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125722 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125661 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125600 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125539 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 125478 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 125417 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 125356 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 125295 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 125234 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 125172 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 125111 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 125050 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124989 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124928 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124867 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124806 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124745 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //