Array 1 6063-5732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQU01000176.1 Methanosarcina mazei strain 1.H.M.2.1 scaffold89_1_size18102-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 6062 35 77.1 41 T.CA..ACG.......GC................. TTTGATTTAGGGGCAAGGATCCATTGTCTGTTCGCTCGTGT 5986 35 100.0 37 ................................... CATATTGAAAAAATGAGAGAGGATCGGATTTTATTAT 5914 35 71.4 39 TCGTG..C.AGA....T.................. AGTGAAATGGGGTTTTTCAGTTTGAAGGTTTTTCCTTGT 5840 35 91.4 40 .......C..................A.......T GCAGACGAAAAACGCAAATAAGAGTACAGACAAATTCATT 5765 34 74.3 0 ...T..CA..A.-...T........A.....T..T | ========== ====== ====== ====== =================================== ========================================= ================== 5 35 82.8 40 CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : TTACTTTATCATTGTCAAAATCAGGAAAAATTCTACAAGGTTATTGATCTTAAAGATCCTCGTGAAGTAAGTTATGAATCTGAGACTTATGTAATTGCTCCTAAAACTATTCCAGAAGATCTTAACTTGGATGGCGGGAAAAAGTTAATCCTGCATATTGTCATATCTGCTCGCCATGTTGAAAACTTTCGGTTACATGATGATCATTTTAATGCAACCAATGTTGCTATAGTTTATAATGTAGACCTAGAGCCTAAAGATGACTGGTTACCTTACGTTCAGGAAATAGTTGAAATAGCAAAACCATTGATCCATCGTTATGAAGATGTTGATGTTTGTCTAATTTGCCCTTCAGTCGTAGCTTTTGCACTTGGAATGGCTTTCTCAAGAAAAGGATCTTTAAAAGTCTGTCATTATTTTAGTGATGGAAAATATAGGCCTGTATTTCAACTCTCCGAGATAGAAGGTCACCCCCCTTTCAGTTAACTGTGAGCTAGAGC # Right flank : TCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCCAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATACGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTGCAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGATT # Questionable array : NO Score: 6.30 # Score Detail : 1:0, 2:3, 3:3, 4:0.25, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGAGAAGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 16912-13756 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQU01000176.1 Methanosarcina mazei strain 1.H.M.2.1 scaffold89_1_size18102-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 16911 37 100.0 38 ..................................... TCCGCTCTTGGATCGTAATGTTCTATTACGTAGGTCAT 16836 37 100.0 38 ..................................... TTACAAAGGCGCGCCCTGATCGCCTAAGAGCTCCCGTA 16761 37 100.0 37 ..................................... AAAACTTCATCGTGGACAGGACTTGAAAACGTAGATG 16687 37 100.0 35 ..................................... ACAATACTTTCGCTAATACTGGCTGGCATGGGATT 16615 37 100.0 36 ..................................... ATAATCCAGGAGCGAGAGGACCGGAAAGAAGGCGAA 16542 37 100.0 35 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAG 16470 37 100.0 38 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTGGG 16395 37 100.0 33 ..................................... AAATGATGTCTTGATACATATCTTAGTTTTGTT 16325 37 100.0 34 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCATACAC 16254 37 100.0 35 ..................................... TACGGACTGGAATTAAACACGGCTTCAAAGGCGAT 16182 37 100.0 36 ..................................... ATAGCGATTGTATGAACTCCGTGAACATCCTTCGGT 16109 37 100.0 35 ..................................... ATCTCCCTCTCTTTTTCATCTAGAGAATTCCGCAA 16037 37 100.0 34 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATT 15966 37 100.0 35 ..................................... CGGGTTCCACATGAACATGGATAGTACATGTTATA 15894 37 100.0 35 ..................................... TCTAATGTCAACTCTATGTATAAGTATGTACTATT 15822 37 100.0 35 ..................................... CATAGTAGCAGACGCATCCCCCGGCTTTGTTTCGG 15750 37 100.0 35 ..................................... ATCGCGTTCAGGTGCGAAGTTCCCATATCCTCCTT 15678 37 100.0 34 ..................................... ATGTATAGAGTTCATATTTTTGTACCATTATTTT 15607 37 100.0 35 ..................................... TGGATTCCTCCGAACGAATCAGTAGCTACAGGCAG 15535 37 100.0 36 ..................................... AAATTTTGATTCCTGGACGTTCTGAGCAGAAAATAG 15462 37 100.0 35 ..................................... CAGCTACTCCTGTAAAATCGTACACCGTTGTAGAA 15390 37 100.0 35 ..................................... TTGTTTACATCTATCATTTTCAATGAAAACGCAAG 15318 37 100.0 36 ..................................... TTATACAGTGCTTCAATAGGTCCGGTCATTTTCTTA 15245 37 100.0 37 ..................................... TAAAAAGAGTAAATGCGTTTTTTGCAGCTAGAGAACT 15171 37 100.0 35 ..................................... ACATACTCAAGTGCTTCAGGTGCAACGACAATAAG 15099 37 100.0 34 ..................................... AATATAATCAACATGGATACACATACATGAAAAA 15028 37 100.0 37 ..................................... CAATATCTTAAGGCTAAGTCCTTCAGAGCTGCACCTT 14954 37 100.0 35 ..................................... AGGCTATGCGTTTCTTAACTCGATTGTTCTATAGA 14882 37 100.0 35 ..................................... TGAACCGAGGGAAGATGATTGAATATATCTTACTT 14810 37 100.0 37 ..................................... GGTGAAATCAATAATAAGACTTTTGCGAAGAAAATTA 14736 37 97.3 38 .....T............................... TCTGTGATAAAAACATAAACTCAGCAAAAGGTGATTTC 14661 37 97.3 35 .....T............................... TAAAATTTGACTGTTGAATTAATTTCGATGTTGTT 14589 37 97.3 38 .....C............................... CCGAACGTATTGTATTTGGTGGATTATACGACGGTAAT 14514 37 97.3 35 .....C............................... TTATTTAGATCGAAATGTCCTAAAATACCAGCTGC 14442 37 97.3 34 .....C............................... AAATAGCATTAACCTGTTTTGCTTCATCTTCGGT 14371 37 97.3 35 .....C............................... TACTCTTGATGCTTCAGCAAAAACAATATTACTCA 14299 37 97.3 34 .....C............................... AAATGCGACGGACACAGCCATTCAGATGATGTAC 14228 37 97.3 37 .....C............................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 14154 37 97.3 36 .....C............................... TTTCCTAATTTGAATTTTAGAAATGGATTTGTATTT 14081 37 97.3 35 .....C............................... CACTATACAGAAACTTGCAGAAATTACACGATACA 14009 37 97.3 35 .....C............................... GCAAATTGATAGCAACAGCTAAAATCTATAAAGAT 13937 37 97.3 37 .....C............................... GCCAATAGTTCTCTTAGGTGATAGCCCTTACATACGT 13863 37 97.3 34 .....C............................... TATAAATCGCATCACATCAAGATCACTGCAAGGA 13792 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== ====================================== ================== 44 37 99.1 36 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAGAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTCATCTTTGAGTAAAATTTTTATTTAATTATTATTTTTTAGCTATTTTTATATTTATTTGATTTTAAACTATTGTAGTCAGCATTAAAATAAATTTTCATAATATTGACTAAATTTAGAAACTTTTATATGTAATCGAATATTTTTTAAGAGATAAATTATTTTAAAGGAGCATTTCCGATAATGAATGATGATGAACTTCAACTCATATTCTTGCTCCATGATCTTGGCATATTTTTTAAGAGAACAGGCTTGCCCCCCTTAGAAAAATTCAGTAAATTGACGGAAAATGAGATAGGTAATGGAGGGTCACACTCAATATGGAGTGCTTCATTTGCTGAAGAGCTTGGTCTGAGCCAGGATATCCAGAATATAATACTATACCACCATAATTACGATTCTTTGGAAGGAGAGAATGCAAGAATCGCAAGTGTACTTGGTCAAGCTGCTGAATTCTTCTCAGGAGAAGAAGAGTTGGGGCCGGTAAACCTTCTATCTGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 12098-8775 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQU01000196.1 Methanosarcina mazei strain 1.H.M.2.1 scaffold15_1_size44201-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12097 29 100.0 32 ............................. AATTTGTTCTTACTCCGATGAGGCCGTATGAT 12036 29 100.0 32 ............................. GTTTTCCCTCCTGCTACGGCTTTTATGGCATT 11975 29 100.0 32 ............................. CATGGACTGAAAATTATAATTCGCCCTACTAC 11914 29 100.0 32 ............................. ATATTCGGGCATCGTAAGACCTTGCATAATCC 11853 29 100.0 32 ............................. TCACAAAATCGACTAAAATATCTGCCGGGGCA 11792 29 100.0 32 ............................. GTGATGCAAGCCAGCATGTCCCTCGATTACAG 11731 29 100.0 32 ............................. GCATATCCAGCACAGACGCGGGAAAGGTAATT 11670 29 100.0 32 ............................. GAAAAAATTAGTATTGTCTAGGAACTCAATTA 11609 29 100.0 32 ............................. GCTCTATGAGTATGAGGCTGTGGACATAGCCT 11548 29 100.0 32 ............................. TAGTTTATATACATCTTACACCAATGCGTAAG 11487 29 100.0 32 ............................. TAATCCTTGACATCTTAATTTTATAATCTCCT 11426 29 100.0 32 ............................. TCCCCCGTAGGATGTACGAATCTTGGAAAGTA 11365 29 100.0 32 ............................. AATTCGAGATCAGTATAGGCAACATAGGGACC 11304 29 100.0 32 ............................. GATCTGCCGTAGATGCTGCACTATCGTCACTG 11243 29 100.0 32 ............................. TATTGCTAGTTCACGGGCACTAAGATCTTCAC 11182 29 100.0 32 ............................. TATGCGGAACAGTCCTTCAGGGCAATGCTGAG 11121 29 100.0 32 ............................. GAACTTAAGAAGGCCTGCAAATGAAAGCAGGT 11060 29 100.0 32 ............................. AAGGGTCTTTAACCTCTTCTTCTTTGTTTTCA 10999 29 100.0 32 ............................. ATGCAATGTGTGAGCAGATACGCAGACCCCGA 10938 29 100.0 32 ............................. CCGAATTCGCATATAAAACGATGTCAGATGAT 10877 29 100.0 32 ............................. CTGTAATGCAATGCCTAGTTTTATATCCTCGA 10816 29 100.0 32 ............................. TTCGCGTTTCCATAATCATGAGAACGGAACAG 10755 29 100.0 32 ............................. GCTGCCAACTTGTCCGGCGGGTTGCAAACATT 10694 29 100.0 32 ............................. AGTCATTGCTCCAGCTCCAAACTACTATATTT 10633 29 100.0 32 ............................. TCATTAAACGATTTCTAAAATTCTCAGTACAA 10572 29 100.0 32 ............................. GAATGAACCGGGGACATAATGAGTAAAGTATC 10511 29 100.0 32 ............................. TCACAGGCAGATTTCATTGAGGCTGCAAAAAA 10450 29 100.0 32 ............................. TTACACTGTTTTTACAGGAGATGCTACAGCAG 10389 29 100.0 32 ............................. TACAGAGTACTGGCAATCGTAGAACAGAAACG 10328 29 100.0 32 ............................. ACGGCATCTGTATCAAAATGCAATCAGGTGAA 10267 29 100.0 32 ............................. TTTGAAATTTGCTGCTGTTACTACCATATGTT 10206 29 100.0 32 ............................. CTCATGCACATGCCTGTTGTTTCTGCAGTAAT 10145 29 100.0 32 ............................. TGATCGTTCTGCTGAGAATGGGCCAATTCCGC 10084 29 100.0 32 ............................. TGTTCAGCCTGCCTATCGCCCAGATCCCCGGC 10023 29 100.0 32 ............................. ACGGGATTGAAAATACCATTATTGATAACATC 9962 29 100.0 32 ............................. GACTCGAACCTTCATCACACGACCGATCGGAA 9901 29 100.0 32 ............................. ACCCTTTTATTGAATCATCAACGACACAAATA 9840 29 100.0 32 ............................. TTACCCCAGTCAGTAGACTAAACGTTATTAAT 9779 29 100.0 32 ............................. GCCCTGTGGAGTTAGAACAGGAACTGCGGTTT 9718 29 100.0 32 ............................. AGTGTAAAAGAGAGTATGGGTCCTCTCTTATT 9657 29 100.0 32 ............................. TTAAATGATGGGCTACACTGTTACGGATTGGA 9596 29 100.0 32 ............................. CCTACGTTATTTCAGGTGCTCCCCAAATATCA 9535 29 100.0 32 ............................. TTATTCTGAGTGACGGGACTACGTGGAGACTG 9474 29 100.0 32 ............................. TCTATTTTCTTTCCATTCCTGACGAGCTTCTT 9413 29 100.0 32 ............................. ACACCACTCTTTCCCTCAATGTCGTCGCTGGA 9352 29 96.6 32 ............................T ATTGCAGCATCTCTCAAAATGAAAACCCTGTG 9291 29 100.0 32 ............................. TTGAGAGAGAAACTTTAGATATTGTACTGGAT 9230 29 100.0 32 ............................. TCTGGAATCATACAAGTAATGTATATTTATAT 9169 29 100.0 32 ............................. CCCCCTTGCTTTAGCGGTGTGAGGAATTCCGT 9108 29 100.0 32 ............................. CCTCCGAAATTGCATTACTTAATCTAGTTGCG 9047 29 100.0 32 ............................. TACCGCTAGGTAAGGAAAAGCGTTATGTGTTA 8986 29 100.0 32 ............................. CCCCTGATCTGTGATTATTCCCACGATTTTAA 8925 29 100.0 32 ............................. GCTATGAACAATAATAGACATGCTATATCAAA 8864 29 100.0 32 ............................. CAGGTATTTAAAAAACGGCAGGGATCAAAAAC 8803 29 93.1 0 .......................A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 55 29 99.8 32 GAGTTCCCCACACACGTGGGGATGAACCG # Left flank : TGCTGGAGGTCTTACTATTCCAGAGGAACCGCCTGAAGCTATTCCTCCTGCAATTCCAAATGAAAGGGGACTTAATGATGTTGGTCATCGTCCTTGAAAATACAACTCCTAGATTAAGAGGAAGACTTACTCTCTGGCTTCTCGAAATCAGAGCAGGAGTGTATGTGGGAGATTACTCGGTAAAAGTACGGGATATGATATGGGAGAATGTAGAAGCTGAGTTCAATGATGGAAACATCCAAGGAAGTGCCATTATGATATGGTCTGCAAGAAACGAAATAGGATTTGATTTTAAAGTCCTCGGCGAAAACCGCAGAATCCCAAGAGAAATGGACGGAATAAAGTTAATATCCTTCATGCCCGAAATAAAGACAGAAGAGTAAATTAGCCGGAGATACCATGCTGTTAAAATATTTTCTATTATATAATAAATTTAATATCAAGAATGTTTTATATGTCCCCGGAAAAACTTTTCCTCTTTTTAGTATAAAAGACAAAGA # Right flank : AAGGTGGTCTAATTATCGCAGTTTATTCCATCTAATTCGCAAGCAAGATCCACTAAAACAAGGATTGAAGCTTTTGTTATTGATACCGAAACCGCCTTTTCCGTTGAATTCGCGAGCATGGTCCATTAAGAGCCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACACACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //