Array 1 101622-103007 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKW01000023.1 Roseomonas genomospecies 6 strain ATCC 49961 NODE_23_length_105184_cov_58.635960, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 101622 37 100.0 39 ..................................... TCATGTCAGTCTCCCGTTTTCCAGTCGGCGCGTAATAGG 101698 37 100.0 35 ..................................... GGTTTTCGACAGCGCCTTGCGGTCGGAGCGGCCGG 101770 37 100.0 36 ..................................... TTGAGCAGGGAACTTGGGCTGGAGACGATCACCGCC 101843 37 100.0 41 ..................................... CTCATAGCCCCTGCGCCTTCTTCTGCACGTAGCGTTTCCAG 101921 37 100.0 38 ..................................... TTGCCGTTCTCGTAGGTGGTCGGGTCCACGGCGAAATC 101996 37 100.0 37 ..................................... GGCGTTACCAATTTGGTAGGTCCCGAACGGTTCCCCC 102070 37 100.0 35 ..................................... GGAACCAGCACTATCCGGTCGATAACGGTATACGC 102142 37 100.0 41 ..................................... AAGAGTCCACAACCCTTCTTCCCCTTCCGGGGGTTAAGCTG 102220 37 100.0 37 ..................................... CTGAGGCCGTCCAGGGAGCCAAGGACGCCGTGGACGA 102294 37 100.0 39 ..................................... TCGCATTTCGCGACCGACCCGGCGGCAGCACAGCCGCGT 102370 37 100.0 39 ..................................... GCGGTTGGGATGCCCTCCGCCTGCATGGTCGGCGCGAGT 102446 37 100.0 37 ..................................... CGCCGTCTCCCCAACTTCCTGCGGCTCCGGAAAGTCG 102520 37 100.0 41 ..................................... ACACCCTCTCCGGGTGAATCCATCGCTTCCCTGATCAGCTC 102598 37 100.0 40 ..................................... TTCATGTCCGCGGCGAACTGCTTGGCGAACCACGCGGCCT 102675 37 100.0 35 ..................................... ATCGCGTCGGACGCCCTGCCAGGACTCCACCCGGA 102747 37 100.0 35 ..................................... ACCCAGATCGAGGTGAATTCCAGCGACAGCACCTT 102819 37 100.0 39 ..................................... CTGCTGACGCAGTCGGCCGGGCTGTTGACGATCTGCGGC 102895 37 100.0 38 ..................................... GCCGATGAACCCAACCACCCCACCGCCATCGACCCGTC 102970 37 86.5 0 .............................C..C.TAT | C [102998] ========== ====== ====== ====== ===================================== ========================================= ================== 19 37 99.3 38 GTCTTCCCGGGCAGAAATGCCCGGGCCTCATTGAAGC # Left flank : GCCCGAGGAGGGCACGCGCGAGATCGCCGTGGAAATCACGGCGGAGGGCACCTGCCACGGCGTGGCCTTCTGGTTCGACCTGTATATGGACGAGGAGGTCACCTACCGTTCCGAAAGCCGGGCGCGGACGAACCACTGGAAGCAGGCGATGACCTATCTGGACACGCCGATCCGCGTGCGCCCCGGCGACCGCCTGACCATCGTCGCCCGCTACGACAACAACCAGATTTCGTTCGGCATCGGCGGTTGAGAGGGGTCAAGGAAAGACAACCCGCCCCACGGATGCTATGATCCCTCCACTGCCGCCATCGTTGCGAGCGGTCCGGTGCATGCGAAAAGCCGGGACCCGCTCGCAAGATGGAAACCGTTGATATCGCTGGGTTCTTGGACATCGTGAAGAACGGAACCGGTACGGTTGGAACGCCAATCCGCGCAGAATCACGGACCGCTCGAATCCGTCGCTGTTTTTCCTGGTTGTTCAAAAGGGTAGAAGCTACCCT # Right flank : TGTGTCGGAAATGCCTCGTCCTGGTCGAGGTGCGCCATACCAGTGGAAGGGCGATGGCGTTGGTTTCCCCTCCTTCCTGGGGTAAGGTGATCGGCGCCGGCCTGGAGATGCCTCATGAGCACCGAAGAGAATTCCGCCCCTCCCAACACCGCCGTTGCCCTTCCGGAACCCAACCTGTCGGACCTCGAACGGCAAAAGGCGGAAATCGAGGCGATCCAGGCGCAGATGATGCAATTGCATGCCCGGGTCGGCCAAAGGCTGGATGAACGGCGGACCACCATCGACCTGACCCCGGCCGACCTGACCCCGGCCCGCCCCGACGCGATCCCGCCAACCGCCGAATAATCCGACCGATGCCCCCCGCCAACGACACGCCCAGCCGGCGCGCCGTCGCGTCCTGGTGCCTCTACGACTGGGCGAACTCGTCGTACAACACCATCGTCACGACCTTCATCTTCTCCGTCTATTTCGCCCGCGGCGTGGTCGGGGACGAGGTGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGGCAGAAATGCCCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.20,-16.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 57929-57361 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKW01000026.1 Roseomonas genomospecies 6 strain ATCC 49961 NODE_26_length_91774_cov_53.867197, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 57928 37 100.0 37 ..................................... GACCTTGGCGGGGTCGGCGCCTTCCTCCAGGAGGTGC 57854 37 100.0 38 ..................................... GACGAGCTGGAGTTGATGGACGACCACGCCCACACGTC 57779 37 100.0 41 ..................................... CACGTCCACCGGCCTCAGGTCGTAGCCAACGATCTCGCGGC 57701 37 100.0 35 ..................................... CCCGTACGAGCGGGAAGCGGGACGATGTTGTTTCG 57629 37 100.0 41 ..................................... AGGCTGTCGGCCAGCCCCTCGACGGAAAGGCCGAGCTTCTC 57551 37 100.0 40 ..................................... TCGCCGCCCTGAACGCCGCCCCACCCGCCGCCAGGGCCTA 57474 37 100.0 40 ..................................... TCCGCCACCGGGTTCGGCTCGAACCGGACGTGGTTTCCCG 57397 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 39 CTCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC # Left flank : GACCTATACGACATCGGCGACCAGAAGCGCGGGCGGCGGGTGTTCAAGGCCATGGAGGCCTATGGGCGCTGGCTGCAGTTCTCGGTCTTCCAATGCCGCCTGACGCCCCGCCGCCGCGCCGCTCTGGGCGCCCGGCTGGACGGCATCATCAAGCCGTCGGAGGATCATGTTCTGATCATCGACCTCGGCCCGGCAGACGCGGTGGACCCCCGCGTGGAAAGCCTGGGCCGCCCCTTCGAAAGCATCAAGCGCGAAGCGGTGGTGGTGTGATACGCGGGAGACGTGTAGAGTACAGCACTGCCGGGTGCCGCGCGAGCGGTCCAGCGCACGCGGAAACCCGGGACCCGCTCGCATGGCGTCGAGCCATTGATTCCGCAGGGTTTTGGGACGGCGTGAAGAACGAAACGTAACCGCCTTCGGCGGCTCGCGCCGCACTTTCCACGGACCGCTCGAATCCGAGCCGATTTTCGGCTATGAATCAGGAGGGTACAGGCTACCCT # Right flank : GACAGCATGGCGACAGCCATCCGAAGGTGCGCGACGGCGTGCTCCTGGCCGCCAGGGCCAAGGTGCTGGGCAACATCGAGGTGGGCCACCACGCCACCACGCCGCCCGCCGCCGGGCGCCGGGGAGTGGCGCGGCGATTGCCGGTCACGCCTTCCGTCGTCGCGGTCACGCGGCCCGCCGTTCGCCATCGGTCTCGCCGGCTTTCCGGCTGCCGCGGGCCAGCGCCGCGGCGATGCGGGCGTACTCCCGGCCGCAGTCCGCCGACCCGCGGTCGCGCGGATAGGGCAGATCGACCGTCAGATCCTCGCGGATGACGCCCGGCGCCCATCACCACCACCCGCTGGGCGAGGAAGACCGCCTCGTCGATGTTGTGGGTGACGAACAGGACCGACACCCCGGTCTCCCGCCACAGCCGCAGCAGGTCCTCCTGCAGGGTGGTGCGGGTCATGGCATCGACGGCGAAGGGCTCGTCCATCAGACCACCTCCGGCTCCACCACCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCGGGCGGAAACGCCCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.90,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 18545-19099 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKW01000029.1 Roseomonas genomospecies 6 strain ATCC 49961 NODE_29_length_84765_cov_47.461412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 18545 37 100.0 35 ..................................... GTGGAGATCGCCGACATGCTGCGGGGGTTCGCAAA 18617 37 100.0 36 ..................................... ATTACCAGTGTTGTTTCGATCACTTCGGGCAGCTGT 18690 37 100.0 37 ..................................... AAAATCCGGCAACGAGGATTGGGCGAACAAGGAAGTC 18764 37 100.0 37 ..................................... ACGCGCAGCCGCAACCGGCGCAACAGCCGGCCCCGGA 18838 37 100.0 37 ..................................... AGCCCGGTCTCGACTTCCGACCACTGCGCGTTTGCCC 18912 37 100.0 37 ..................................... CGCCGCAACACCGTGATGCAACAGGTGCAACAGGCCG 18986 37 100.0 40 ..................................... GCGGCGTACCGGTGCATGGCGGCGGCGAAGATGGAGCGGC 19063 37 97.3 0 ...................................A. | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 99.7 37 GTTTTCCCGGGTAGTAATGCCCGGGCCTCATTGAAGC # Left flank : CGGGCGTAGAGGTCCGCCGGCAGAGCGTCCGGCACCACCAGATGCGGGAAGGGGTCCTCCCGCAGCGGGGTTTCCTCCAACCGCCGCAGGACATGCCCGGTGCTCTCCAGCGCCACGGAGGGACCGGCGGGCAAGGCGGCAGGCGAGGAAGTGTCGGACCGTAAAGCGTGCATGATCGCCTCGTGTTTCGCGTTCAAATCACCATAACGGCGCCACTCCCCGCTCCGCAAGCGCACCACGCGCCCGGGGTACCAAGTGCGGGGATGACCGGCCCAGTTCCGGCTGCTATGATCGCGCGCGTTGCCGCTGCCGTGCGAGCGGTCCGGTACCCGTCGAAACCCCGGACCCGCTCGCAAAATGGAAATCGTTGATTTCCTGGGGTTCTTGGACATGGTGAAGAACAAATCCGGCACAACGCCGCCACGCGTTCGCCGAGAATCGAGGACCGATCGAATCCAGTCCGATTCTCCAAGCCCGTTCAACGGGGTGCAATCCACCCT # Right flank : CACCATACCGTTCACCGAGGAGCCGACCGAGGTCGTCATCCCGCACAGCAACGTCCGAGCCTCCGTCATAAGGACACGACGCCCCCGCCATTCCACCGGAACACCCCACAGCGGTGCGCCCGGTCGTCTTGCCGGTGGCGGGGGTGGCGGGTTAGGGTCGGCGCAACGAAACCGGAAGAAACGCCTGCATAGGGATCATGATGTCGGACGCCCACCTTCTGCCCCTGCTCACCCGCATCGCCGAGGCTCTGGAACGGCTCGCGCCGCCGCCGCCGGGCCGATTGGACCTCACCGCCGCCGATGCCTTCGTCTGGCACGCCGATCCCGACCGGCTGGAGCCGGTGCCCGCCGTCAACCGGGTGGAGATCGGCCTGCTGCGCGGCGTGGAGCGGCAGCGCGACATCCTGCTGGACAACACCACCCGCTTCGCCACCGGCCTGCCGGCCAACAACGCCCTGCTCTGGGGCTCGCGCGGCATGGGGAAAAGCTCGCTGGTGAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCGGGTAGTAATGCCCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.20,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 87893-84362 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKW01000020.1 Roseomonas genomospecies 6 strain ATCC 49961 NODE_20_length_114421_cov_52.906408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 87892 35 91.7 30 C.C..-.............................. AAGTCGCCGATGGTCACCCCATCGACGTGC 87827 36 100.0 30 .................................... TCGCCGCGGCGCTTGACGACAACAGCGTCA 87761 36 100.0 30 .................................... AGAACCACCTTGCGGTCGTGGGCCGCCGCG 87695 36 100.0 30 .................................... GGCGGCAGGGGGCGGGACCACGTCGGGGTG 87629 36 100.0 30 .................................... GGCATCTGCCTGATGGTCGACAGCGGCGGC 87563 36 100.0 30 .................................... AAGAGCTTCCCCTTCGGCGCCATCACCTTC 87497 36 100.0 30 .................................... ACCGGCGCCGCTGTCATCCTGCCACGCCAC 87431 36 100.0 30 .................................... TCTCGGCGCACGCCAGCGACACCCATATCC 87365 36 100.0 30 .................................... GGCGAGCTGCGCGCGGCATGCCTCCCACAC 87299 36 100.0 31 .................................... CACACAGCCGACCCGGCAGGCCCATGTAGAT 87232 36 100.0 30 .................................... CGGGGGACAGTTGTCCGGTGGTGCCAGGAT 87166 36 100.0 30 .................................... GCCGCGATGGGCGACACCTGACCGATGTAG 87100 36 100.0 31 .................................... TCTTCGAGCACATCCCCCTTAAACGTCTCGA 87033 36 100.0 29 .................................... GCGGCGTGACCGGTCGTGGCTCCGACGGT 86968 36 100.0 30 .................................... AGCGTGGTCAGCCCCGTCTTGATGCCAGCT 86902 36 100.0 30 .................................... ATAACGCAATCGGCGCTGGAGAGGACCGCC 86836 36 100.0 30 .................................... CGGCAGAGCCGTAACGACCAATGGGCGGCC 86770 36 100.0 30 .................................... GCTGCCGGGTCGCGGCGGCTTGTGTTGATG 86704 36 100.0 30 .................................... AGCCATGACGCTGTGGTGGCAGGCGTGGCA 86638 36 100.0 31 .................................... CGGCAATTACACCCGCGTGGGTGCGTCCAGC 86571 36 100.0 30 .................................... TGGAGCCTGAAACCCCGTCTGAAACCAGCC 86505 36 100.0 31 .................................... TGGGCCGCTCGTTGTCAATGACCCATTTGAC 86438 36 100.0 30 .................................... AGGACGTAGGGGTGCACGTTCACGTGCTTG 86372 36 100.0 30 .................................... GCTGCTGGCTGTACTGGGTCTTCATGGACG 86306 36 100.0 30 .................................... GAAGTCGTTCTTGAGGCGTTGGCGAATGGC 86240 36 100.0 30 .................................... GTGGCCATTGGGAGCGTCGGCCACATTCAC 86174 36 100.0 30 .................................... AGCCCCGTGTAGGGCCGCACTGCGGCCTCC 86108 36 100.0 26 .................................... ACGATGCGCCGCCCCCGCCCGAAGAG 86046 36 100.0 30 .................................... CATCCGGACGAGTCCCATAACGTTGCAGGG 85980 36 100.0 30 .................................... TACGGCGACGCGAGCGAGGCGCAGAAGGAT 85914 36 100.0 30 .................................... CGGGCTGGAAGCCAGCCCCGCGCGCTCCGA 85848 36 100.0 30 .................................... GCGCCAAGCGCGTCCTGATCGACGGCATCT 85782 36 100.0 30 .................................... CGAAAATGGATGGCCCAATTCAAACAATCG 85716 36 100.0 30 .................................... GCCGCCGGGCGTGCTGCCGCCGATCCCGGT 85650 36 100.0 29 .................................... AGCCAAGGGCTGGCCCACGGCCTCATAGT 85585 36 100.0 30 .................................... GACCGCTTCGGCGTTGTCGGCCAGCGTCTC 85519 36 100.0 30 .................................... GGCCTGAAGAAGCCGGACGCCGAGCGGCTG 85453 36 100.0 30 .................................... GAACTGGCGGAGTCCCTGTTTGGCGAGGGC 85387 36 100.0 30 .................................... GTGATCGTGCTCGATCTCGTCGTGGTCATG 85321 36 100.0 30 .................................... GAACGGTTGAAGCTGGAGTATGACCACACC 85255 36 100.0 30 .................................... CACGCCGGTCGCCTTCAGCTACTTCGCGCG 85189 36 100.0 30 .................................... TTGGGAGAACTTGTCCTTGAGTTCGAGGGA 85123 36 100.0 30 .................................... GCCGCCGGTCACGATGCGGTGCTGGTGGAT 85057 36 100.0 30 .................................... GACCTGCTCGCCCTCGACCGCGCTGAAGAA 84991 36 100.0 30 .................................... GTGGCGGAGGCGAGGGCGGCGAGCGCGTCA 84925 36 100.0 30 .................................... TCCGCCTGGATCGCCGCCAGCACCGCCAAG 84859 36 100.0 30 .................................... TGCACACCCACTACGTCGATGCCAAGCACA 84793 36 100.0 30 .................................... CGTAACCGGGGCTGACCCGCGCCGGCTTCC 84727 36 100.0 30 .................................... CGCGGTGCCGCACACGCCGGGCATCCCCGT 84661 36 100.0 30 .................................... AACCCGGAAGGCCCCAGACGGGGCGACCGG 84595 36 100.0 30 .................................... ACCAGTCAATTCCTTGCGTTCGATGAACAT 84529 36 100.0 30 .................................... GCGAGCGCGTCGATCCCGAGGATGCGGGTG 84463 36 100.0 30 .................................... GGCCTCTCCGAGCGCTCGGTCACCTCGGCC 84397 36 97.2 0 ............................G....... | ========== ====== ====== ====== ==================================== =============================== ================== 54 36 99.8 30 AGTGTAGCCGATGGGAAAACGCGGTCCAACCGCAAC # Left flank : AGGCAGCAAGGCGTGGGCGCCGATGCCGCTGGAATGGCCAGCACCTCCAAAGGTGCCGCAACCGGCGTGATGGGGCAGGCCTACGGAGGGGCAATCAGGCGGCGATGCTGAGCGGATACCGGATCATGTGGATGATGGTTCTGTTCGACCTGCCGGTGCTGACCAAGCGCGAGCGCAAGGCTGCCACGAGCTTCCGCAAGTTCCTGCTCGACCAGGGATTCGAGATGTCGCAGTTTTCCGTATACCTGCGCCATTGCGTGGGCAAGGAGCAGGCCGAGGCCCTGACCCGCCGAATCGAGAAGGCTGTGCCGCCAACCGGCAAGGTGCACATCGTCTTCATCACGGACAAGCAGTATGAGACCATCGTGTGTTTCGACGGCCGCGTGCGCCAGCCATCCCGGAAAAATCCGGAGCAATACGTGCTGTTCTGACCCGCGCGGAGAGGGATTCCGTGCATGTGGAGGGCGGGATAAGGCTGCCTTTTCAGAGCCTTATACCGC # Right flank : ATGGTGGCGTCAGTTGAGCGATAGGAGAGCCGAGACGAGGTGAACAGCGGCCAAGAAGGTGCCGGCGAGCTTGTCGGAGCGGGTTGTGATGGCTCGGAAGCTCTTCAACTTGTTGACGAATCGCTGGACGAGGTTGCGTTCCCGATACAAGGCAAAATCGGTGTCACGGGGCGTCAACCGATTCGCCTTGGAGGGGATACCGGGGTGATGCCTCGCGCCTCCAAGGCGACGATCATGGCGTCACCGTCATAGACCTTGTCGGCGATGAAGGCTTGGGGCTCGACCCGTTCGAGCAAGGGAGCGGCTTGGCTGAAATCGGAAACCCGGCGCGGTTCACCCAGCCGGGTGTCTCATTTCCCGGCCGCGGTACACTTGGACGGACCCGGTCCAGAAGCTCCACAGAGAAGCTCCACAGCGGCCTCGGCGACGTCACCGGGGCGGATGGAGGTTATGCATCGCTTGGCCTGTTCGACACACAGGCTCAGCCCACAGCCGGCGCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCCGATGGGAAAACGCGGTCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 173675-174306 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKW01000011.1 Roseomonas genomospecies 6 strain ATCC 49961 NODE_11_length_187489_cov_51.418057, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 173675 37 100.0 35 ..................................... GAGGGGAAGTCGAAAAGGAGGGGCGTGGGGAGATC 173747 37 100.0 37 ..................................... GGCGGGCAGACCGCGAGGATGCGCCAGCCTTCATCCA 173821 37 100.0 43 ..................................... TACCGAAGTAACGATTAGCGTCCCGAGCGGGAAGCAATACGAC 173901 37 100.0 38 ..................................... TTGCTCGTCAATGGGCGACAAATGTCAGGCTAGACTTT 173976 37 100.0 36 ..................................... ATGCCTGTGGAGATGGCCGACTTCCGGAATCTCGGA 174049 37 100.0 38 ..................................... GGGCTGTGGCTCTGGTAGCCGTCCTCATAGACGACGAA 174124 37 97.3 37 ....................T................ TTCCCAACAGTCTCGTACGAACACAGAATTTCTGTGC 174198 37 94.6 35 ...........T........T................ GCATTCCAGGTTCCGGATCTCTCCGGCGCGCTCCA 174270 37 97.3 0 .................................G... | ========== ====== ====== ====== ===================================== =========================================== ================== 9 37 98.8 38 CTCTTCCCAGGCGGAAACGCCTGGGCCTCATTGAAGC # Left flank : ACTCTGAACAAAAGGTTGACGGACCGTCGGGGTGGTATCGCCAAGGGAAGCGGGAATGAGCGTTCACTCTCCGCACAGCACATGATCGGACGGGCTCAAGACATCGGGGAAGCAGAATGCTGCCGCGGTCCGGCTGTTCCCTTGCGGCAACATCGCGCCCCGAGGAGGGCGAGGCCCCCTGCCCTTCTGCGTCCAGCAGGCCAGCGCCCGCGCTATGGAATCCCTGGGCCGTTCCTTCGAGTGCATCAAGCGCGAGGCGGCGATGGTGTGACGCGCGCGGAACGTGTAGACTGCGGCTCTGCCGGCTGCCGCGCGAGCGGTCCGGCACACGCGAATTCCCGGCACCCGCTCGCATGTCCTCGGGCCGTTGATTCCGCGGGGTTTTTGGACGCTGTGAAGAACGAAATGCAACCATCATCGACGGTTTGCACCGGCCCCTACCGGGACCGCTCGAATCCGTGCCGATTCTCGGCGCTGGCTCAGCGCATTATAAGGTACCC # Right flank : CGCAGTCGCCTGGGTTATCCGGTGGGTTTGCCGGTTGCCGCGACGCCTTGGTTGCTACCGTATGCCGTTACAACCCGTCGAACAGAAGCTGCGCCGGAGGCTGGTTGGAGCGCTTCTTCTTTTTCTCCTTTGTCGCCTTCTCTGGAACCGGCTGTTCTGACTTGTCGGGAGCCGGTGCGGATTCGGCCTGAACGGGGGCGGGTTCCTCCGGAATCGACGTTTCCACGGCCAGCGTCTCCATCACCGGAGTCCCCATCACTGGCGCTTCCTCGGCGGGGGCCTCCGTGACCGGCGGCTCTTCGGCCGGCTTGGCCGCTTTCTTCTTTTTCGGGCGGGTGGGGCGCGGGGTGATACCCACACCCTCCTTCACGCGGGCCTTGGCCTTGTCGCGGGCGATGGCTTCCGGCGCGTTGGGATCGCCGTCCAGCCATTTGCCGCGCTTGATGACCTCGTTCACGCGGCCCTGGTTGACGCCGAGCTGGAAGGCGATTTCCTGCTGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCAGGCGGAAACGCCTGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.30,-16.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 143760-144014 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKW01000008.1 Roseomonas genomospecies 6 strain ATCC 49961 NODE_8_length_232429_cov_51.267923, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 143760 36 100.0 36 .................................... CTCCCCCGTCTAGCCAGTCGTTACCGCTCCCCCCGT 143832 36 100.0 38 .................................... ACGAACACCCGACGCAGCGCCTCGTAGGCGTTCTTGTA 143906 36 100.0 37 .................................... GCGGCGACGCCGCGGCGGACAACGGCGGCGACCTCGC 143979 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GCTTCAATGAGGCCCGGGCGTTTCGGCCCGGGAAGA # Left flank : CAACTTCGTGACCTTCTGGCACGAGCCGACCATCGAGGGCGCCTTCTACAAGAACGTCCACGTCTTCAGCGCCGGCCAGCTCGACCGCTCGCCGGGCGGCACCGGCACCAGCGCGATGATGGCGATGTTCGAGGCGCGCGGGAAGATGGCGATCGGCGACACCATCCGCTCCGAAGGGCTGCTCGGCACCGGCACCTTCGAGGGCAGCCTGCTCGGCGAGACCCGCCTGAATGGCGTGCGCGCCGTGCGCCCGACCGTCAAGGGCACGGCTAGCATCCTCGGCACCGCCCGCTGGGTCATCGACCGCAACGATCCGGTCGGCGCCGGCTTCCTGGTCGCCTGACCGGTCCGCACCGCCTTGGGCCGGTTCTTCCGTGCGGGATCGGCCCAGGGGAGCCTCTGGCAACGGCGCGGGCGTCGTCGTCGTTGCCTCTCTTCCCGGGCGTTTCGGCCCGGGAAGAGGAGCCCCATCAATTCACGAGCCTCTGGAGACAATGAGA # Right flank : AGCGGTACCCTGTAGCGTGCTGATTCGTTGCCGAGAATCGGCTCGGATTCGAGCGGTCCGGGATTGGCCCGTCGGGAGCCGCCGATTGCGGTTTCGTTTCGTTCTTCACGTCGTCCAAAAACCCTGCAAAATCAAAGACCCGACGGAGTGCGAGCGGGTCCCGGGATTCCGCGTGTGCCGGACCGCTCGCGCGGCATCCGGCAGTTCGCAGCCTACACGTCAGGCGGGCATCACGCCACCATCTCTTCGCGCTCCAAGCTCTCGAAGCGGTGGCCCAGGCTTTACATGCGCCTTTCAATGCGCGGGGCCGCCGCATCCGCCGGGCCGGGGGCACAGCTCCTCCCGGCCATGGCTGCCCGGAACGTTGGGCCGCATGGGACCGCGGCATCGGTTCACCGGTCCGGCAACGCCGTGGACGCCGGGTGGGGCGTTGCATCCAGCAGGACACCCGACCGGCGTTGGGCGACCATCGCCGTGAGGAGGGCCGCCGCCTGTTCCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCGGGCGTTTCGGCCCGGGAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.40,-12.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //