Array 1 379108-378689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZY010000004.1 Actinomadura sp. NEAU-AAG7 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 379107 29 100.0 36 ............................. GTCTCGCCGGGGTGGAACAGGTCCAGCCACTGGTGG 379042 29 100.0 36 ............................. CCGTGCGGTCGGAGTACTCATCGGCCAGCTCGACGG 378977 29 93.1 37 .............TG.............. GAGATAGCGTGATTACATCTCCGGCTACGGCGTAGCG 378911 29 72.4 36 .............CTGCGAA.G....... CCTGGACGACAGCGGCCGTCGCGCTGCCCACGATCG 378846 28 93.1 36 ............T-............... CTTGCGAAGCTGATTCGCTACCGCGTCACCCTCGCG 378782 29 89.7 37 .............TG....C......... CCTATGAACGTCACGAGCGCGACCTTGGCCAGCCAGG 378716 28 75.9 0 ...........T.GGT......-....GT | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 89.2 36 TCCTCATCGCCCCAACGAGGGTTCGCAAC # Left flank : TGATGTCGGATAGGACGAATTGGGCGGTGCGCAATAGCGCCTCCGAAGAATCGCTGCAACAGGGAAGGTCGCAACCGCGCGCCGAGACAAGGAGGTCGGGGAGACCCGGACGGCCGGCTGAAACGCGGCGACGCGCGGCGGAGCGGTGGCTCTACGCCTGAAGATGCGCGTCAGATGCGACGATCACAGAGTTCCCATGCAGTCACAAGTACCAGAGAGACCGTCCTGCGGCAACCCCAGCGACGCCCACGACACCGAACACGTCTCGCGCCTAGTCCTCATCTCCCCGTGGCTTCGCAACCGCACCAAGGGCATCGGAGCGTCCAGCTCCTTACAGGGGCGCTCTTCGCCCCTGAAGGCTTGTAACCTGCGGACGGCCCGGCTCCTAGGCCACGTTTTCAGCGACACACCGGGCCCGACGACACAACCGCCGGATCGCTGAAGAACCTGCGTCCAACAGGCCGCGCTTCCCTTAACAGACCTGTGGCTTTACCGTGGGG # Right flank : ACGCGCTTGCCGCCCCACCCCCTTATCCCACTCCGAGGAGGCGCTCACCGTCCCTGGAGGGCGCACAACAGATCGCGGATGGCTTTGCGCTAATCCCTCATGGCGAGGAATTCGCCCTCCGGGGAGGGCCTAATGAGGTAGAGCCAGTGACGGACTGCTTAGTTCCTACCAAGCGTCGATCACCGGCCCTACCCAAAGAAGCACAGCTAAGAGGGCAGAGCTTTGATAGCGGGGCGACTAGCCCCCTGCGTCCAGGCGTCCTGCTTTAACGTTGTTGGTGAACATCTGCCAGGCGGCGGAGGTGAGGGCCAGGCGAGAGCCGTTCGGGTTCTTGGAGTCTCGAACCATGATCGCGGACGTCATGTCTGCGACCTCCACACACTCACCTCCATGCTGGGCGCTGTGGCTGCTTTTGCGCCACTGGCCTACCTCTACACACTCGCCGCCTTGATGGCCGCTATGGCTGCTCTTGCGCCAATGAATACCTGACACACCTGAGG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCATCGCCCCAACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.60,-4.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 442925-443216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZY010000005.1 Actinomadura sp. NEAU-AAG7 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 442925 30 100.0 33 .............................. ACCGCGACCATGCTCTTGCCCATTGCCGGTCGG 442988 30 100.0 36 .............................. CGGCGAGCGCCACCAGGAAGGGGCACCGTCAGCGCC 443054 30 100.0 37 .............................. AACGTGAGGACGACACGATCCCCCGGCCGGACGTCCC 443121 30 90.0 36 ..G..............A........T... CGGATCGAAGTCGCGGACCGCATGGGGTGGTCCTAC 443187 30 83.3 0 ............T...G.....GG.....T | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 94.7 36 GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Left flank : ACTCGGCCTCAGTGACGTTCGCGGTGGTAACCCAGGTGCGATATTTCTCCCACGCCACCATGCCGCCTCGGCGAAGGCGGTGGGCTGCACTCCTGCCGTCCACGTCAGGGCTCCGTTCTCGTCTGCCGAACGCGAGTGGCGCTTCCTCCTACATCTTGGGACGGGGTTCGGGTTGTGTGCCGTACTGCATTCGGCACAGCACTGTCTCCGCGACGTCCAATGAGCTGACCACCGACCGCGCCAACAGGAACACGCGACTACCCCCGACGCCGACTGGCTGTTCTAGGCGGACCGCACTGGGCAACCGCTCACCCCCGGTGCTTTCATGAGTAGCACGGGCCGGTGCCGGTCGGGCTGCTCACTCAGTCCTTGGGGCGGCGCGGGGGTGGGCGACATTCTTCAGCGACACGCCAGGCTCGACAGCACGACCAGCGGCTCGCTGAAAAATCTGTTTGAGGCGGCCTCCACTTCCCTTCGGGCACCTGCAGCTTTACCGTGGG # Right flank : TTCGCCGAAATGTATGGACGTGTCATTTGGTGTGGGTTCTTCGGCACCCGGCTGGATACGCGGCTGTGACGCGGAGGGCATTTATGCGGGGTGGCCGGGGTTGTTGTTGGTCTTGGTGCCCCAGTTCCACATGGCGTGCATTACCGGTTCCAGGGCTCGGCCGTGGGGGGTGAGGGTGTAGCGGACGCGTGGGGGCCAGCCGGGGGTGCGGTGGCGTTCGATCACGCCCGCGTTGGTCAGCTGGGCCAGGCGGTCGGAGAGGACCTTGTCCGAGAGGGCGGGGAGGGCGGCGGACAGCTCTGAGTACGTTGCTTCGTCGCGGCGCAGGAACTCGCGGAGGATCAGGGGCGTCCAGCGGCCGGCCACGGCGGCGAGGGTGATGTCTATGGGGCAGTGGGGGTCGCGGTCCGGGGGGACGAGGGCGGTGTCGGGGCAGTCCGCGAGCGGGCCGCGTTCGTGTCCAACCGTTTGGTGAGTCACGGCAGCCCTTTCTAAGGTTT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGCGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 432502-432145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZY010000001.1 Actinomadura sp. NEAU-AAG7 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 432501 30 80.0 35 A....C.T....C.C....A.......... GCCTCGACCATCACCAAACGAGGCCGGTAGTACAT G [432497] 432435 29 86.7 35 ............C....A.-.........A CATGCCCAGCGGCCTCTGGAAGCCCTGAAGACCTA 432371 30 96.7 37 ...........C.................. TCCGGGAAGGGCTGACCGACCAGTACCAGGACCACAG 432304 30 96.7 35 ............T................. CCCTCGCCACGGTGGGACCCCTGGCGCACGATCCC 432239 30 100.0 35 .............................. GCACCTGACCCGCTCCACGTCCGCGGCTACCAGCT 432174 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 93.3 36 GTTGCGAACCCTGGTAGGGGCGATGAGGAC # Left flank : CTCGTCGTTCTCCAGCCACCATCGCGTAGTCCCGTAGGCACTCTTGAACGTCTCGTAGGTGAGCCGGGCAAGTCCATGTGCCACCCCTACGTCGTCACGGTTCTCCAGGGGGCCTCTCCGCAACTGCCGGAGGAGCGCCATGTCTAGGTACCGCTCGTCGTCATCTGAGTAACCGAAGAAGGTGTCCGGGTGCACGACTCGATTATCACCAGCGTCGCTGACACTTCGGTGGTCTTCGGAGTGAGAGGGGCGAAGTTCTTAGCTGGCCGGCTAGGTTGCCGCCCCGACGGCAGCAGACGCATCTGTAACTGCTATTTGGTAGATGACGATTACGCGATCCCGCTGGCACGGACCGGGGTACTCGTTCGCGCGAACGGCGCGCAACCCGTGACAGACCGTTTCGCGCGAACGAGTGCCCCGGCTCGCGGGGGTCCAGGGGGCGGCGTAGCCCCCTGGTTCGAGCTCGCTCAAGCGGCTTCCAACCACCTGGATCCATCTGG # Right flank : CCCATGGTAAAGCCGCTGGCTGGATGGTGCACGGGCGGCCGTACATAGAGCGCGATTTCAGCAAACCTCCGGTAGTGCGCGAGACCCCGGCGTGTCGCTGAAACGATCAAGGACGATTTCGTGGGCGAGCACGTCCGAAGCATCCCAGAGCGGCCTGGTTGCTCGCTTTCTCCTGCGCTTGTTTGCCCTGTTGACAGGGGCAGCGCGGGACGGCGGGACCGGCCCGGAGAGGCCGCACGCCCGCCGTCCCGCGCTGGCCCCGGCGACCGCGTAGCGGGCGCCTTTAAAGACGTAGAGAAAGTTCTCATCCGGTGTGGGTGCTGGCTGGGTGACCTGGGGTTACGGGATGAGCTTGGTTAGGGCTCGGCGGGTTTGGTCGGCGAGGCTGACGGCGGCGCCTAGGCGGTTGTCGATGGTGAGGTGGGCGGCCTGGGGCGGGTCTTCGGTGTTGAGGCCGGCGGTGTACTCCTCCCAGTGGGCGAGCTTCCAGCCGTCTCGGG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTGGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 517380-517743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZY010000001.1 Actinomadura sp. NEAU-AAG7 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 517380 30 100.0 40 .............................. CTCAATACCTCCGTTCACTGGATGCAGGTGCTTGGCAACG 517450 30 100.0 35 .............................. CTACCGGGGACGAGCGGCGCGGGGCGCTCCTGGAG 517515 30 96.7 38 ..........T................... CTGGCGTTCCGAGCGGCGGGAGTCCGGTACAAGGCCCG 517583 30 96.7 35 ......................C....... TTGTCGTTGCTCGACCGCTGAGGTCTGGTGGTCAT 517648 29 93.3 35 ..........-.....G............. CGCAGGATGCGGAGGCGGTCGTGGCGCCGTTCCGG 517712 30 93.3 0 ..................G........G.. | CC [517722] ========== ====== ====== ====== ============================== ======================================== ================== 6 30 96.7 37 GTCCTCATCGCCCCCACGAGGGTTCGCAAC # Left flank : CCCGCACCGGTGCATGTGGACCACGAGCTCGACGACGGCGACGTCCTCGACTTCGGTGGCGGCGCCCAAGCCGTGGCCGCGCCAGGCCACACACCCGGCAGCGTCGCTCTGCACCTCCCCGGCCCGAAGGTGTTGTTCACCGGAGACACGGTGGCGCGCACCCCCGACGGAAGCGTCATCCTCGGCGTGTTCAACGCCGACCCACCAGCAGCGGCCGCCTCCTTCCAGCGGCTGGCAGCCCTCGACACCGAGATCGCCTGCTTCGGCCACGGCGAACCACTCACCCAGAACGCGGCCCGCGCCCTACGAACCGCCGCCCGGAACCTGCTCCCCCCATGAGCAACGACCTCGTCAGTGCCCAATGGCGCTTTGTGCCGTCCGAGAGCGCTACTGACCGTTTCAGCGACACGCCGGAGTCACGCGCACAACCGGAGGCTTGCTGAAATCGCGCTCCATGTACGTTCGCCCGTGCGCCATCCAGCCAGCGGCTCTACCATGGC # Right flank : CTGATCCTTCGGAGTGCGCGGTGTCGGCAGCTTCTTGTCCTCGTTGCCCTGTGAGGGGTCGATATCTGGGGTCAGGGCGTTTTGGGTGGGGGGCGTGGTCAGCCGACGGTTACGAGGGCTACGCCTGCTACTGCTATGGCCATGCCCAGGCGTTGGACGGTGCGGAGGCGCTCGCTGTAGGTGATTCGGGCCAGGAGGACCGTGATCGCCGGGTAGAGGGACGTGAGGACGGCGGCGAGGCTGAGCAGGCCGTCCTGGACGGCGATGAAGTAGAGGGCGTTCGCGCCGGCGTCGAGGGCGCCCGACAGGAGAGTCAGGGCGATGAGCGTGCGTCGGGCTCCTGGTGGGGTGGGCTCGGTGGCGCCGCCGAACATCTTCAGGTACAGCAGGGCCGTGAAGACGACCACGACGTTGCCTACGCGGGCGGCGACCAGCGGCCATAGGCCGCCGCCGTCCCCGGCCTCCTTCAGGAGGATGAAGAAGATCCCGAAGCAGGTGCC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCCACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.80,-4.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 824726-824495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZY010000001.1 Actinomadura sp. NEAU-AAG7 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 824725 29 100.0 40 ............................. ATGACGATCAGGCCGGATCCGTAGCCCCGGATCATCCACC 824656 29 100.0 38 ............................. GACACGATGATCCTGGGCTGCCCGTCGCGGGAGATGAG 824589 29 96.6 37 .......................T..... AACGAGACGATGTTGCCGTCGTACCCCTCGGCTGGTG 824523 29 86.2 0 ..T.............CT.........G. | ========== ====== ====== ====== ============================= ======================================== ================== 4 29 95.7 39 TCCTCATCGCCCCTACGAGGGTTCGCAAC # Left flank : CCATGCCCGCGCGACGCTGACCCGCCTGCTCACAACCCGCGCAGACGAGCCCGACCCGCACGCGACGCGCCGCAGAACGTACCGGAAGGTCACCACCGCCGTATGCGCGATCGGTATCGGCCACCAGGCCGACCCGGTCGCCGTGGCGACCCAGGACCTGGGCCTCGCACCAGAGCCGGCCGGACGGATGGTGCGCCGCCTCGCGCTCCTGGTCGCCACCGCGGGCGTGGACTGGACGGACCGGGTAGCGGAGTTCGCCGACACGTCCGTCCGATGACCGACGTCCGCACACGGCCTCCCGTACTCGACGACGGCACACCTCAGAAGACCAGTGCCGACCACGAAGCCGCCGATCTCAGCTCGAACGGCCAGAACTCGGCGCACCGCAGGTGTAGATTTCAGCACCCCACCGGGCCCAACGGCACAACCAACGGATCGCTGCAAAACCCGCTCCAACCCGCCCCCTCTCCCCACAACCGACGTGCAGCTTTACCGTGGGC # Right flank : CTCCACCCTCGGACGTCTATGTGGAAGTCCTGGAGCGTCTGCGGTCGCCGGTGTCAGCAAGCAGGCCATGTACAGCGACTTACGGGGTCCTGGAGTTGGCCGAGGCCGCGCGGGTCGCACTATTGCGGTGCGGCTATCGCGAACCGTTCCGGCTTCACGAGTCGAGCTCCGCATCAGGATCGCCGAGCTGAACCGCCATCCCGAGTTGCAGCGAATGTGGCGGGACAATGAGGGTTCCGCCGCCCATGAAGGGCTGGCCGAGTACTCGGCCGGATGCGCTCAGGACGGTCGGCTCGACGTGCCCGCGCCTGGTCGCGGTGCCCGCCAGTTCCTCCTGCTCCTTGGCGGCGAGTCCGGGTTCGGCTCGCAGCCGCTCCCACTTCGGCAGCAGCGAGACCACGGATTTGATCCTGCGCGCTCACCGTCCGCGATAGGGGAGCAGGGCACGCGAAGGGTCCCGACACGACGGGAGCCGCGCCCCCGGCTGCCATGGGCGTTCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCATCGCCCCTACGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 870055-868930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZY010000001.1 Actinomadura sp. NEAU-AAG7 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 870054 29 100.0 32 ............................. GCGCCGAGCGCGGCGGCCGCCGACCCGTAGGC 869993 29 100.0 32 ............................. GGACCGGCCGGGTCGCTGGAGGCCGATTTCGA 869932 29 100.0 32 ............................. GCGCCGAGCCCGTCCGCGTCGCGGCGTTCAAC 869871 29 96.6 32 .......................A..... CGCCGTGACGCTAGGACGCCCGCCAGGAGGCC 869810 29 100.0 32 ............................. CCATTTCATGGCGTCACCGGGGGTGACCATGT 869749 29 100.0 32 ............................. GCAATGCCGTGTCCGCGTGGGAGACCTACATC 869688 29 96.6 32 ......T...................... GATCTCGCCGCCGCTGAGGACGCCGCTTACGA 869627 29 100.0 32 ............................. CGCCCTTGCGGCCCGTAGCCCGGTGTGATCCC 869566 29 100.0 32 ............................. GCGTCCGGAATCGCGATGGCGATGTTCAGGAC 869505 29 96.6 32 ........................C.... ATGGCCCACCACGTCAGGTCGTGCTTGATCTG 869444 29 93.1 32 ....................A...C.... TTCGACTTCGCGGCGTTCACGCCCGCGCTGCT 869383 29 96.6 32 ................G............ ATCTAGCAGACGCTCGACTCGTCGGACCTGTC C [869374] 869321 28 86.2 32 .............A.C.....-......A GCGGGACGCGCGGACGGCCCGTCGGTGGTGGT 869261 29 100.0 32 ............................. AAACCCTTCGGACTTCGGCGTGTCGCTAGTCA 869200 29 93.1 32 .............A...T........... CGGTCCACGACCGTGACGCGAAACGCGACGGG 869139 27 93.1 33 ............--............... AGCGCGAGAAACGTTGCGGGGAGGCAGCTTTCC 869079 29 89.7 32 ........T........T.......C... GTCATCCGGCCCGAGCAGATTGCCGTGGTCGG 869018 28 93.1 32 ........T............-....... TCCTTCCGCAGCCAGTGGCCGAGGCCGTCCGG 868958 28 82.8 0 .C........A..A..T.......-.... | A [868938] ========== ====== ====== ====== ============================= ================================= ================== 19 29 95.7 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CCTCCCCCGCGTACTCCGGCGCCTCCCGCAGCAACTGCTGGTAAAGATCAGCCACCGACACCTGAAACGACGGCGAGACCTTCCCGAGGTCATGCAGTCCTGCCCAGAAGCAGACCAGCTTCCGCATCTCGGAGTCAGACGGCACCTCGGTCCCCGCGCCGTCCCGCAGAACCGCGATCCCCTCAACCCACGCATCCCACAGCGCACCCGCGATCGCGGCCGTGTCGATCAGATGACAGATCACCGGGTATGGGGCCAGCAGCCCTTTTTCCTTCCCCCACAGGCGGGCATCCACAGCCGGCACCGATCGGTCCGCCTGATCATCTTGCGGCATGGCCCCAACTCCAAGTCCGTCCTGCGTGCTGCTCCCGCCACTGGACCACACGGCACCGACAAAACCATCGCCCTTGCGTAGGCTCACCCCATGCGCAACACACACCATCCCGCGCCCCATTCATCTCAGAACGGTAACGGCCTCACATAGCCCCAGGTCGCGAAGT # Right flank : TGCTCGATAGGGCGTCTCGGTGGGCTGCGGGCTACAGCCGGAGGTAGGCGTTGGCCGGAGCCACTCCATGCACGTCTCGGCGATTACGGAGAGTGATTGGTGGAGGTGGTCGTCGGGGCGGGGTGGTGAGCACAGGGTGGGCACCAACTGTGGTGGATCATGGTGAACTGGGGTGCACCTTGTGGAGTTTTGACCTGCAGAAACGTGAATACGAAGGACGACGAATTACGTCATAGTACGCGTGACATGGAACTGCTAATGCGGTTTGGGTTTACCGCCCATCCGGGGTTCAAATCCCCGATCCTCCGCCAGCTGACCTGCGGGGATGCATCGCTAGACGCATCCCCGCAGTCGCGTTTCGGGGCCCGGAACAGGCCCGTGGCTGCGCAATCGGGTCAACAGCGGAAAATCCGCAGGTCACGCCCCTAGCTGGGCTGCACACGAGGTGCACAGCCGCACGTCGGCGCTGTGCTCGGGAGCCGGGGCGAGCGCCGACCTTC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 880657-879720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHFZY010000001.1 Actinomadura sp. NEAU-AAG7 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 880656 29 100.0 32 ............................. GCGATCAGGTCTAGCGGCGCCGGTGCCTTCCC 880595 29 100.0 32 ............................. ATTCTGGAGAGCCTGCCGCGCGACATCTGGCG 880534 29 100.0 32 ............................. CGGACACGGCGCTGACGCCCACGGTCAGGAAG 880473 29 100.0 32 ............................. GAGGGGACGCTCACGCTCCCTCCCGCATCTCG 880412 29 100.0 29 ............................. ATCCTGGCTCTGATCGATGACGCCGACAC 880354 29 86.2 32 CCGG......................... CCGGGCTCTCCGAGGCCTCCGAGGCCGACCTG 880293 29 100.0 32 ............................. GCGTTGTAGCGGTCCTGGGGCGCGGGCTCGGT 880232 29 100.0 32 ............................. CCGGAGCCCCCTACCTGCGGATCTATGTCAAC 880171 29 100.0 32 ............................. TTCACGCACCGTCCATCACCATCGCCTCCTGC 880110 29 100.0 32 ............................. AAGGCGGCCGGGTCCTCCGACGGGGCCCGGAC 880049 29 100.0 32 ............................. CGCTGAACCTCGCCGTTCGTGACCTTCCCCGG 879988 28 96.6 32 .....................-....... GTGGCCTGCGCGACGCGCTCGGTGGCGTAGGC 879928 29 96.6 32 .........................G... CTGTGGACGGGCGCCACGGCGGCGCGTCGCCT 879867 29 100.0 32 ............................. GGCGAGAGCGTGCAGTGGTGGACGGCGGAGCG 879806 29 100.0 29 ............................. GCGGGGTGTCGTCGAACGTGATCGTGGGT 879748 29 75.9 0 .GG.........T.C........T.C.T. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.2 32 GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GACCGCCCGACCAAGCACATCGTGCGCGGTCGTCACAGCGGCAACGGGATCCTCTCCACGGTCGTGCCCGAGCCGACCGGCTTCAAGTTCCCGCGTCAGGAAGGCGTCGATCTGCTCGGCCGTCTCGGCCAGCTCGTAAGACGTCTGGGCAAGGTTTCCCAGAATCGTGTAGGCAGCGGCCGGCTCCGTGAGGCCGGGCAGGCCCTGGGCCAGCCGGTTGAGCGACCGGACACGCTCAGGCAGGTCACCGGCAAGGAACTCGATGTTCTCATCCGAACTGATCTCGTGTTCGTCCACGTGAGGTGTTCTAGGAAGCTGCGCCAGCAGGTGCCTGGCTGCCCCGACCGACGCCGGGTCGGAGATCACCGATGGGCGCATGCTGTTCGAGCGGGCCGGGGTGAGCTTCCTTGCGTAAGCTCACCCCATGCACGACGACCGCCGACCCCGCACCCGTTCATCTCAAAACGGTAACGACCCCACGTAACCCCAGGTCGCCAAGT # Right flank : GGTTGGAACCAGCTTGGGCTGGCGCCGCCGTAGTTCTCCCGATGCAGCGGGAGTTTCTACGATCCGCTGCGCCTGCAGGGTGGTCTTCGGCGGGGGTTGGAATGCGTCCTATTGGCGTGGTGACGTTAGGTGGTTTCGGGGTCGTTTGTTGTTTCGGCGGGGTTGAGGGCGATGAGGGTGAGGCCGTCGAAGTCGATGGGGACGCGTCGGCGTTGGCCGGCGGTGTGGAGGGTGAAGCCTTGTTCGTTGGCGTCTGGGTGTAGGAGGAGGGCGGCGCCGTCGTCGATGGAGGCGGCGACGGCTGTCCAGAGTTCGGTGCGGACGCGGGCGGAGACGGTGCCGACGTAGAGGCCGGGCATGGGTTCGGTCATCCATCGGGTGAGGGCGCCGCGCAGGTGGTCGGGGATGGCGGTGGTGGCGATGACGGTCATGTTGGCCATGTCAGTCGAATCCGTAGTTGGTGCCGCCGCTGACGCGTCCGAAGTCGGGGTCCCAGAGGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //