Array 1 26279-25490 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPK01000054.1 Escherichia coli strain JML097 sequence54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================= ================== 26278 28 100.0 32 ............................ ATTTGAGCGACGTAGCGGAAAATACGATCGCC 26218 28 100.0 32 ............................ GGGAAAAGTTTAGAAGGATTTAAAAATGGCTA 26158 28 100.0 33 ............................ CTGAAACGCATCAAGTGAATTTAACGCGTACTG 26097 28 100.0 32 ............................ TTTACGCCGTCCATCTCCCATATTCCAACATC 26037 28 100.0 32 ............................ GCCATGACGTTTACTCCAGCTCTCGTCAGTAA 25977 28 100.0 32 ............................ TGAGGAAGAAAAACCAGCAGCGCCACCGGAAG 25917 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 25857 28 100.0 32 ............................ TGCTAAATTTTTTAATGCTGCCATTTGTTAGC 25797 28 100.0 33 ............................ GTACACATTCGCAATCAAAATATATCTGCTAAA 25736 28 100.0 32 ............................ GCGCTGAAAGGTTGGCATGGACAGGAAGCAGT 25676 28 100.0 32 ............................ GATAATAAAATCATCAATCTGTTCGACGCCAG 25616 28 100.0 71 ............................ TCAATTTCAAACTCTGGTTTAATCCAGGCAGCTTAGAAAGTTAATTCGTATTCCTGCTCAGCGGTGAGACG 25517 27 85.7 0 ...G...A...............C-... | T [25498] ========== ====== ====== ====== ============================ ======================================================================= ================== 13 28 98.9 36 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 37532-35337 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFPK01000054.1 Escherichia coli strain JML097 sequence54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37531 28 100.0 32 ............................ TGCATGTAGCGCCACGCCGTGACCACCGTCCT 37471 28 100.0 32 ............................ ATACAGTAGCGAACAACTGGCAAGGGGGGCTA 37411 28 100.0 32 ............................ TGATGAAAGTATCCTTTGCCACGTTTTTCCTC 37351 28 100.0 33 ............................ CCAAAAACTGGTGAACGCGGATTACCCGGTCAA 37290 28 100.0 32 ............................ ACATCATGAACGCACAGCAAAATGCCGCGATT 37230 28 100.0 33 ............................ AAATACGGCATTTGATGGTTTTGTTGTCGCCAT 37169 28 100.0 32 ............................ ATTTGAAATGAGCCTTTGAGGAATCAGCTTGT 37109 28 100.0 32 ............................ GCTACAAAGCGGCCTTTTTTATGCGGTGTTCA 37049 28 100.0 32 ............................ GTGCTGAGTCGGAGGATCCGTACACAACAAAA 36989 28 100.0 32 ............................ AGACGTCAAGAACGGTAACCCGGTTGAAGTCT 36929 28 100.0 32 ............................ ACTGCCCCGACTGCGGGCCGGTGTGCGGCGAC 36869 28 100.0 32 ............................ GACACCGGATTACCCTGGTCAGCCAGGAATGT 36809 28 100.0 32 ............................ CGGCAAATTACCGCCGGGCTGACGTTTGATCT 36749 28 100.0 32 ............................ TTCCCTGCCGGTTCTCTGTATCCATGAATATC 36689 28 100.0 32 ............................ CAGATATCGTGCCGCACCGATCGTGACGAGCA 36629 28 100.0 32 ............................ ATACCGCCATCAAGTGTAATGCCCTGATCCAT 36569 28 100.0 32 ............................ ATGTACGCGAGATACGCGTGATAGAGATAAAC 36509 28 100.0 32 ............................ GTCTCGAAGGGTGAGATGCCGAATCGTGGTGA 36449 28 100.0 32 ............................ ATCAACATGACACCCGATTGTATTCAGGAATT 36389 28 100.0 32 ............................ GGTCGGTGAATCGCTGCATCGCGGTTCATATA 36329 28 100.0 33 ............................ CACTCCGAAAAATTGAGCGTCGAGCACTCGCCA 36268 28 100.0 32 ............................ TGAATTTCTCCGCGCTGCAGCGCGATGTCATC 36208 28 100.0 32 ............................ GCAAAAGCCGCCCCCATGAACGCTGCAAAAGG 36148 28 100.0 32 ............................ TCAAGCCCTGTATCAGCGTCAACCCCGAAATA 36088 28 100.0 32 ............................ TGAATACCTTTGCCTGCATAAATCGCCATATG 36028 28 100.0 32 ............................ AACTTGTAACGGCAAACGTGGGATACGAACTC 35968 28 100.0 32 ............................ CTGACAAAAATCCGTTAGGCGCGGAAATGATG 35908 28 96.4 32 .........T.................. AACTGGCGGCGGTCGCCCACCTTCCAATAATC 35848 28 100.0 32 ............................ GATACCCGCAAGCGCGGGAACGCTTTGATATT 35788 28 100.0 32 ............................ CGTCATGACTGCATTACCGACGCCGAAAACTT 35728 28 100.0 32 ............................ GATATAGCGTGAGGCGGGTCGGAATATTTAAC 35668 28 100.0 34 ............................ ACATTGCAATTAACTGATATCGCACCATCATCGG 35606 28 100.0 32 ............................ TACATACTCAAACGATTACTGAATCACAAAAC 35546 28 100.0 32 ............................ TGGTCGGCATACACGTTGACGCGGTTGCGGTT 35486 28 100.0 32 ............................ CCGGTAACTGCGTATCACGCAACCGAGGCCAA 35426 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 35366 28 85.7 0 ....................T...C.CT | C,A [35340,35343] ========== ====== ====== ====== ============================ ================================== ================== 37 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //