Array 1 115170-116540 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOGN020000003.1 Salmonella enterica strain LJH 614 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115170 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 115231 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 115292 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 115353 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 115414 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 115475 29 96.6 32 ............................A TGCCATCGCCGAGGGAGGGCCTCCAGATCATC 115536 29 100.0 32 ............................. CTGAATAATTCGCCGTAGGTAGCCAGCGCAAT 115597 29 100.0 32 ............................. CCGTCGCTGACGAACTGACTTTTCTTCATCTC 115658 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 115719 29 96.6 32 ............................A CATTGGGCACCGTACCGTTGCGAATACGTCGC 115780 29 100.0 32 ............................. CCAGTAATCACAGACTTTCTCCGTGTCTTCAC 115841 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 115902 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 115963 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 116025 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 116086 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 116147 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 116208 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 116269 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 116330 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 116391 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 116452 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 116513 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132676-133315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOGN020000003.1 Salmonella enterica strain LJH 614 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132676 29 100.0 32 ............................. TGTCCAGGCGATTTCCTGGAACCTGGCATTGC 132737 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 132798 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 132859 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 132920 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 132981 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 133042 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 133103 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 133164 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 133225 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 133286 29 93.1 0 A...........T................ | A [133312] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //