Array 1 223120-221232 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZGX010000041.1 Shewanella algae strain A65 A65_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 223119 28 100.0 32 ............................ AGCGCCAGCGCGAGCACCACCATGTTTTTTTG 223059 28 100.0 32 ............................ TTCCAGTGCAGTTTGCGCTGAGGCAATGCCGT 222999 28 100.0 32 ............................ AGTAATGTAATACTGGACTTTTGTCCCATTTT 222939 28 100.0 32 ............................ GACAACAGAAGCGGCAACAGTGGTCAGGTCTA 222879 28 100.0 32 ............................ GCCAGAAGGCGGTGCCCTGTAGCTTATCAGAA 222819 28 100.0 32 ............................ AATATGAATGCGCGGTGGTCTAATATCAAAAC 222759 28 100.0 32 ............................ AAAACAAAGACCAGGGCGAAATCAAGGGCAAC 222699 28 100.0 32 ............................ TTGGAGCAATCATACGATGGTGTTTGGTATCG 222639 28 100.0 32 ............................ TCTGACGGCGCCAAAGGGGACGTTACCGATAC 222579 28 100.0 32 ............................ GCAGTGCTCGCGTTCCGTGGCAACGAGTCTTA 222519 28 100.0 32 ............................ ATAAATGTACCAAGGCGGTAAAACTGTCGAAA 222459 28 100.0 32 ............................ TCCAGAAGATGATTTAGACCTCACGGCTTCTG 222399 28 100.0 32 ............................ ATCGGTGGCCAGGTACTACCGCTGTGCTTCTA 222339 28 100.0 32 ............................ AGCAATAAGCCACCCCATAGCGCCAATTCATT 222279 28 100.0 32 ............................ TGACAGGCAGTGGCGTTATGTGGTCACCATTG 222219 28 100.0 32 ............................ TTAAGGGGCTGCTGTTTCAGTAATGGCGCCGC 222159 28 100.0 32 ............................ ACAACAGCGCCACCGGCGTAGTGACTATCAAC 222099 28 100.0 32 ............................ ACTTTTGCCCCTTTGATGGTGGCTCTATTCAT 222039 28 100.0 32 ............................ ACTTGCCGTTTATGAATGTCGGCCAGAGCACA 221979 28 100.0 32 ............................ GGTTAACTTGATGGAAAACATCGGAGGCTCAT 221919 28 100.0 32 ............................ TATGCAAATGCAGCTGCCGGCGGCGCTAAAAT 221859 28 100.0 32 ............................ AATATCAGCGAAGGCTACGGAGTGACAAACCC 221799 28 96.4 32 ....A....................... TGCTCAATCTGGAAGAAGGCCGCAAGCTCAAA 221739 28 92.9 32 ....A.......C............... GTTCTCAGCGTTGTACTGCACAACAGTATCTT 221679 28 89.3 32 ....A...T...C............... CGAAGGGGAAGGCCGTTTTGCCCTTGCCGTAT 221619 28 92.9 32 ....A.......C............... AGTGAAATCCTGTTGTTCGTTTACAGCAAAAA 221559 28 89.3 32 ....A.......C....T.......... ATCAGCGCAAACATGAGCAGTAGCGGTCTGAC 221499 28 92.9 32 ....A.......C............... ACTATATTTTGGTGCTTCTGTAGCACTGCCGT 221439 28 89.3 32 ....A.....T.C............... GGGCATCGTGTCGGAAGTATGGGGGTTATCCC 221379 28 92.9 32 ....A.......C............... GATGGCCGGCATCAGACTGGATATCGAATAAA 221319 28 89.3 32 ....A.......C......A........ AGGGTGAAGCCGTCCTTGTTTATCATCCAGGC 221259 28 89.3 0 ....A.......CT.............. | ========== ====== ====== ====== ============================ ================================ ================== 32 28 97.3 32 GTTCCCTGCCGCTCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGCAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAATATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTGTTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GTTCTTCTGGTGAATTGCACTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCTCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //