Array 1 296055-296631 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNX01000002.1 Salmonella enterica strain 176 NODE_2_length_523612_cov_16.7068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 296055 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 296116 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 296177 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 296238 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 296299 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 296360 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 296421 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 296482 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 296543 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 296604 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 313865-315971 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDNX01000002.1 Salmonella enterica strain 176 NODE_2_length_523612_cov_16.7068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 313865 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 313926 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 313987 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 314048 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 314109 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 314170 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 314231 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 314292 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 314353 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 314414 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 314475 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 314536 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 314597 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 314658 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 314719 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 314780 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 314841 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 314902 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 314963 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 315024 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 315085 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 315146 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 315210 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 315271 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 315332 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 315393 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 315454 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 315515 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 315576 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 315637 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 315698 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 315759 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 315820 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 315881 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 315942 29 93.1 0 A...........T................ | A [315968] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //