Array 1 2313517-2314314 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAM01000001.1 Methylomagnum ishizawai strain 175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2313517 36 100.0 34 .................................... ACGATTACCGCCACAGAAGCGGGATCGTTGATAA 2313587 36 100.0 34 .................................... TTTGAACCATCTTCGGTAGGAAAAAAATCATCTT 2313657 36 100.0 34 .................................... TTCCTTATTGATTTGCGCCGCCCGTCGCCTCCGC 2313727 36 100.0 36 .................................... ACTTCCTGCGTGATTTGGTCAGCAAGCTTCTGACGA 2313799 36 100.0 33 .................................... CTCCGAGCACATCGCAACGCGATGCGCGAAACT 2313868 36 100.0 32 .................................... TACGCAACGCGGCTTGTTGATTGGCAACCTCC 2313936 36 100.0 32 .................................... TTGGTTAATCCATTGAATAATGACTCCAAGGG 2314004 36 100.0 32 .................................... TCCGCAGGGGACTTGTTCGGCAATAACCCCAG 2314072 36 100.0 33 .................................... ACGGACCGATGATCTTGCCGTCCGTAGTCAAAA 2314141 36 100.0 33 .................................... ACGGACCGATGATCTTGCCGTCCGTAGTCAAAA 2314210 36 100.0 33 .................................... CAGAGGCGAACACGAGGGATTCGGTCAGGATGA 2314279 36 97.2 0 .....................T.............. | ========== ====== ====== ====== ==================================== ==================================== ================== 12 36 99.8 33 GTTGACGGATTCGCCCTTTGTCGAAGGGTTTGAAAC # Left flank : AGACGAGGCGGCGGCGGGCGAATTCGTGTTTTTCGACGCGGTGCCGGTGGTGCCGCCCGCGCTGATGGTGGATGTGATGACCCCGCACATGGGCAAGTGGTATGAGGAAGGCGGGGAGATCGAACTGGACGAAAAAGGCCGCTTGCCGCCGGAGCGGGTGCCCGCCGACTGGCACGACCCGGTGCCGGTGAAGTTCCTGGCGGTGCGGGATATCCGGTTGCTGTTCGCCATCGCGCCGCGCCGCCGGGGGGCGGGGGACGTCCCGGAGGCCGAGGCCTTGAAAGCGCTGTTCGATGGGTTGCGCGGGGCGTTGGAATGGGTCGGCGCGGGGGCGAAAACCGCCGTGGGCTATGGCCGATTTGAAGAGAGCGCAGAAGCTTGATTCCATTGGGAAAAATGGCTATTTTGACCCTCCGGCGCGGGTCCGGGGCTGGAAATGCCCGGCTCGCGCCGCAAACGGCCCCTGGAAGCCACGCCCGGCGCGGTTTCCAGGGGCGGCA # Right flank : CCCTAACCTTTTCAAGCTCCCATCCCCTCCCGCCGCGTCCGGGAGGGGAAATTTCCCCACCACAAGCTTGTGAACCCGCAAACGCCACCGGCGTTGGGATAGGCTGGTTCCGTCCTTTCCCAACGACGGAGAACCCCCCATGGCCGTTCTGAGCGCCCTCGAAAAAATCGCGTCCTACTTCCGCCCGCCCACCCATACCCCCGAACCCGAAGCGACGACCGGGCCGGACTCCACCGCCAACCCGCCGACCGAACCCCGGACCACGCCCTTCGAGGCGCTGGCCGGGCGGCTCGGTGACTATGGGGTCGTGCTGGAAGCGCGGGGTTCCGACAGCGCCCGGCTGCTGGCCACCACCGGCTTCATGCTGGGCGAACACCACGATGCCATCGCGCCCTTGCTCGATGCGGTCCTGGCCAGCCCGCCCGGCGCGGCGATCCGGCTGGACCTCGGGCAACACCCGGCGGCGGACATCGGCATCCTCTGCCAGTTCGGCCAAACCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGACGGATTCGCCCTTTGTCGAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 2315955-2316473 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAM01000001.1 Methylomagnum ishizawai strain 175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 2315955 36 100.0 33 .................................... GGAACAGTAAACGCGACCATAGATTCGCTTCGC 2316024 36 97.2 33 ......................T............. TTCCGCGCCATCTCCGGGTCGGTGATGCTTTTC 2316093 36 100.0 34 .................................... AAACTCATACCCAGTGCTGGAACAGCTTTGCTCG 2316163 36 100.0 34 .................................... GGGGTGTACCGCTGGGAAAATTGCTTGCTCAACT 2316233 36 100.0 32 .................................... GCTCAAATCCTTGAGTCGCTGCAAGTTCATGG 2316301 36 100.0 33 .................................... TTGCATATACCGGACATCCAAAATCATTTGCCT 2316370 36 100.0 32 .................................... AGACCATGGATTGCCAGACCAAAGAAAACCAC 2316438 36 94.4 0 ....................C.T............. | ========== ====== ====== ====== ==================================== ================================== ================== 8 36 99.0 33 GTTTCCGAATTGACCCTTTGTCGAAGGGTTTGAAAC # Left flank : TGCGGGCGGCACTTATCCGCCCAAGCCGTTGGTGCCGATCCTGGGGGGTATCTTGGCGTTTGAAAGCGATTGGAAACCCGCCTTGGACCAACCGCTGCTCGCCGCGCTGGATAGGGCTGACACCGATTCGCGCCTGGATATGGGATGCGTTGCCGCGCATGGCATCTTCGATTACCGGCGGGAGGACTCTGCCTATCACCTGACCCCCCAGGAAAAACCCGCGACGGCGTTTCTGTTCGAGTTGATTTCCCGCCTACAATCCAGCGCCACCGTGCCCATGATCGATATCAAGGCTTATGCCGCGTGGCTGGCGATTTCTTGAGGGGCGGGCCTGTTGGAGACGGCGGAGTACCGGATTTTATGAAACCGCGCAGAAGATTGATTCCATTGGGAAAAATGGCTATTTTGCCCATTCGGCGCGGACTTGGGGCTGGAAATGCCCGGCCCGCGCCGCAAACGGCCCCTGGAAGCCACGCCCGGCGCGGCTTCCAGGGGCGGCA # Right flank : CAACAGAATTCCTTGCCGGATTCCGTACAGAAACCTCTCTAGAAAAACTCCCGCACCACAAGCTTGGGGAAACCCACCCCCTCCGCGTGCCGTCCCTATACTGGCCGCGTCCCCGCCCACCGCCACCGACCGGCGCTGGGCGGTTTTGCTCCCTCCCTCATCCACGGAGTTTTCAATGACGCCCGCAACTCAAAAGCGCCCCAGCGCGGCCCCCGGCCTATGGGACGAACTGGCCCACAAAATCCTGTCCCAGCTGTTCGCCTCCGGGCGGCCCTGGCCGGTGGTGCTGGTCGCCCTGGTCATGACCGCCCTCAACCTGTTCGCCAGCAGCCTGTTCGAGCTGACGGCCTGGCTCGACGACCGGCACGCGCTGGGCTGGATACACCTCGGCTTGGGATTCCTGGCCTTCCCGGTCCTGCTTTGCTGGCTGATCCGGGCCGCCCGCAAGGCCCGGCAACGGCTGCGGCCCGTGGTCACGGAAGAACGCCCCCAACCCGTCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAATTGACCCTTTGTCGAAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 4250368-4249844 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXAM01000001.1 Methylomagnum ishizawai strain 175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 4250367 36 100.0 35 .................................... GAATTAATTCTGCAACAAGGTTTTTATCAGCTAGT 4250296 36 100.0 34 .................................... CTATCTGTTCTAACACATAGTCCAGCACAATCAG 4250226 36 100.0 34 .................................... AACCACACTCCGCCGCTTATCACCATGACGACCT 4250156 36 100.0 34 .................................... GCACCACTCCCGTCATGTTCAGCGCATCGTAGGC 4250086 36 100.0 32 .................................... CAAGGTACTCAAGGCACTCAAGGTGACGTTGG 4250018 36 100.0 34 .................................... TGTAAAGATACCACCGATGTTTCTTCTTGCTTTA 4249948 36 100.0 33 .................................... CAATATTCATATCCATTTGAATTCTTAGAATGA 4249879 36 91.7 0 .................................AGG | ========== ====== ====== ====== ==================================== =================================== ================== 8 36 99.0 34 GTCTGAATGATGCCCTGTTATTGAAGGGATTAAGAC # Left flank : GTCGAGTTCGAGACCCCGCTGCGGCTGCAAGCGGCGGGCGGGGTGCGCGGCCACGCCATGACCGCCCGCGATGTGTTGATGGCCCTGGCGCGGCGCTATTGGCTGCTGGCCGAGTTCCACCAGGCGGCGGAGCCCGCCGTGGATTTCGCCGGGCTGGGCGGGCTGGCGGGGGCGGTGGAGTTGACGGGGGAATTGCGCTGGCGGGATTGGCGGCGCTTTTCCAGTCGGCAGCGGCAAGAGATGGTGTTGGGGGGCGTGCTGGGACGGGTTACACTGCGGGGAGCGTTGGCCCCGTTCGCGGGGCTGCTAGCCGCCGGGCAGTGGACGCACCTGGGGAAGAATGCCAGTTTCGGCTTGGGCCGTTATCGGCTGTGCCAGGAAAATCAAGGAGATGGCGAAAGTCAAGGGATGGCGTGAAAAAAGTTCCGACAAGATCGCCGGAACGAGTGTGAACCCCCTCTGTAAACCGTTGATTCCAGGCGGGTTTTTAGGGGGGGTCG # Right flank : GGAAGATAAGCCATGACCGAAACCGTCAAAGCCGGTGAAAACCTATTCCTGGCCTTGGGTTTCCCACCCCACGAGGCGGAAATCCTGCAACTGCGCTCCGACCTGATGAACCATTTGGCGCTTTGGGTCCGGGATAGCGGCTTGACCGAGGCCGAAGCCGCCGAGCGCCTGGGCGTGACCCCGGCGCGGATAGCCGATCTCGTGCGCGGCAAATGGAAGAAATTCACCTTGGATAGACTATTGACCTTGGCCGCAAAAACCGGGCTGCATTTCCGTTTGGAATTGAATAGCGCGGCGTGAGCTTTTTGGTTCCCTGTTATTGAAGGGATTAAGACACGCCCCGCATCTCTGCCAAGAGGGCTGCTTTCGGTCTGGAATGGATTTTGGCCCGGAGGCTGCCCTAACCCGCAGGAATACCTCCCCACCGTTCACAAGCTTGTGAAACCTCCCGCCCGCCCCCGATAGGCGTCTAATAAGCCCCGTGGTTTCCATCACGGCAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAATGATGCCCTGTTATTGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //