Array 1 44880-46372 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNO01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1573 NODE_11_length_170366_cov_2.25035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44880 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 44941 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 45002 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45063 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45124 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45185 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45246 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45307 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45368 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45429 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45490 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45551 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45612 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45673 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45734 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 45795 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45857 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 45918 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 45979 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46040 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46101 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46162 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46223 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46284 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46345 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62504-63980 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNO01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1573 NODE_11_length_170366_cov_2.25035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62504 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62565 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62627 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62688 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 62749 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 62810 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 62871 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 62932 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 62993 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63054 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63115 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63176 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63237 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63299 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63402 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63463 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63524 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63585 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63646 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63707 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63768 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63829 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63890 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63951 29 96.6 0 A............................ | A [63977] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //