Array 1 554679-555066 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLCF02000002.1 Delftia acidovorans isolate Delftia strain 2189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 554679 28 100.0 32 ............................ ATCAGATGGCACCTTTCACAATGAGATTGAGA 554739 28 96.4 32 .....T...................... AGTGCCGCACGCAACATCACTGCCAGGCTGGA 554799 28 100.0 32 ............................ CGTCACACGCACGTCAGGCGAGACTCGCTCAC 554859 28 100.0 32 ............................ AACACCCTCCGACGCGGAGCGCCTGGCCCGAG 554919 28 100.0 32 ............................ CAGGGCCTCGGTGGCATCGCTGCATGCCTGGG 554979 28 96.4 32 ......C..................... CCAAGGAAGCCTCATGACAGCAACCAAGATCC 555039 28 89.3 0 ....T....T..G............... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 97.4 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCGCCAGCTTTGGTACCAGAGGGCGCCGTGCCCTACCTGGTGCAACGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCTGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGCGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGATCCTTTTTTCTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTATTTGCGGGTTAGGGGGGAAAGTTCTTTAAAAATCAATGAATTGGGAGGATTTTTGTCTA # Right flank : AGGCTGCTGACATGGAGGCGACAGAGAAGCCTCTGCATTCAACCTTCCGGGCCATGCTCCGCGTATTCCACAAAGGACGGTGCTTCATCAAACAGTTGCAGGAGCAGTTTCAGGCGCCGGGCGTAGAGACTCTGTGGCCGGTCGAAGGCCTGGGCGGCCAGGGCGATGGCTGCGCGGGCGAGGTACCACTCGTTGTCGAATTCACTGGCGTCCTCGAATACCTTGTGCCGGATTTGCCGGATGTGGTTCAGCGCCAGGTCTGCGGCCAGGTCCACCTCTACATCCGCGTCATGCCAGTCCATGTCGGCACAGCGTGTTTCGATCAGGGCAACCAGCCCCCTCTCTGCGCGGGCAATGGACAGGGCGATCATTTGCTGCATGGTGGGCCAGGCAGCGGTGTCCATCGTGCAGGGCTTGTTCGTTGAGTGCCGTGACGCAGCCATATCGATTCCTTTGTCGTCGCTTCAATGACTCGGGCTTTCTATGCACGATCTATGCAC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 223764-222744 **** Predicted by CRISPRDetect 2.4 *** >NZ_FLCF02000005.1 Delftia acidovorans isolate Delftia strain 2189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 223763 32 100.0 36 ................................ TGGGCCACCTGCAGGGCCTTGGCGCGTGTCACCGAT 223695 32 100.0 34 ................................ ACTGGAGTAAGCACCATGGCAACTCAACCCACCC 223629 32 100.0 34 ................................ CGTCCACCTGACGCGCGGGCACCTTGTCCAGGGA 223563 32 100.0 35 ................................ TGATCCTTGAGGTACAGCTCCCAATGCTCGGCCAC 223496 32 100.0 33 ................................ AGCGCCTCGTAGCTGTACGCGCCGCCATCAGGC 223431 32 100.0 33 ................................ GACTTCGCAGCCGCGCACCGCGTGCAGCCGAAC 223366 32 100.0 33 ................................ GAACGCACTCTGATCCGAGAGCGGACGATTGCT 223301 32 100.0 34 ................................ CAGCTCATCGCGCCGCTTCTGCGGGAAGCCCGTG 223235 32 100.0 35 ................................ AGTGCCCTGGGAAGGATCGACGCGCAACCGGCGCA 223168 32 100.0 33 ................................ ATCCCATTCTTGGCCGCGCAGCAGCATGGACCC 223103 32 100.0 34 ................................ ACCAACGTGATCGAAGGCCATCCGTTCGCCGAGA 223037 32 100.0 34 ................................ ATCGCATCGCGCACGATCCCAGTAGTCGCGCCGG 222971 32 100.0 34 ................................ ACGGCGTGCTCCACAAAGCCCACCCCGCCCTCGC 222905 32 100.0 33 ................................ TGCTGGTCGCTGGGCTTCAGACCCAGAGCCTTG 222840 32 100.0 33 ................................ GACCCAGCTCCACGCTGTACCCGTGCAGCCCCT 222775 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 16 32 100.0 34 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : CCGGCGATGAGAAATGAGGTGTGCCGATGATGGTCCTGGTGAGCTATGACGTCCGTACCCAGGACCCGGATGGTGCCCGCCGCCTGCGGCGCATCGCCAAGGCCTGCCGGGACTTCGGCCAGCGCGCGCAATACTCCGTCTTCGAAATAGAAGTGGACGCCGCGCAATGGGTCGCCCTCAAGGCGCGGCTGATGCAAATCATCGACCCCGCCCAGGACAGCCTCAGGTTCTACTACCTGGGCCAACACTGGCGCAGCAAGGTCGAACACATCGGCGCAAAGCCCGTGCTGGACCTCGACGCCCCCCTCGTCTTCTGAGCCTCCGCGCGAACCCCAAGTGACCGCCGCCTGCCCTTGAGGTTCGCGGCCGCGCAAGCTGTTGTTTTCAAAAGGGGGTGTGCGAGGGATTGGCTGAACGCCGATTCCGCAGCATGACAGTGCCGCCTGGTTCGCGGAAGCCTGGCTTTTTTCATAGCGGTGAAATTGCTCTATAAGTACCCC # Right flank : CCCTGCCGCCACAGCAAGCGCCCCACGCATTTGAAACGAATCGCCTGACTCACTCCTCGCCGCGCAGGCCGCCATTGAGAGAGAGCCCAGCCACTGCCTGCAGCAGGTACCCGCGTGCCTCATCCAGCGAGGGACCTGCATGCCCATCGATGCGCCGAATATAGGGAGACGTCAGCACAGCCAGGGCATGGCCATCGGGCCCGAGGATGGGGCAGGAGATGTCCACCACGCCATAGGACTGCAGGCTTTCGCTCTGCTTGTGACCCGTGCTGCGTATCTGTTCCAGCATGTCGTGCAGTTGTGCCTCGGGCAGTGGCACCTCGCCTTCCAAAGGCGTGTGCTCGGCCAGCATCTGCGAGCGGCGTTCGGTTGTCTGGCAGGCCAGCAGCACATGGCCTGACCCGGTGTCCAGCAGCCCGACGCGTGCGCCCAGCCTGATCGACAGGCCCCAGTTCCCGGGGCCGGGGACCTGGGCCACGATCAGGACATTGCCACGGTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //