Array 1 422050-423847 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASV01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_13311 13311_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 422050 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 422111 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 422172 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 422233 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 422294 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 422355 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 422416 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 422477 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 422538 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 422599 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 422660 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 422721 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 422782 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 422843 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 422904 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 422965 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 423026 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 423087 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 423148 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 423209 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 423270 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 423332 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 423393 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 423454 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 423515 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 423576 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 423637 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 423698 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 423759 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 423820 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 439980-441700 **** Predicted by CRISPRDetect 2.4 *** >NZ_QASV01000008.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_13311 13311_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 439980 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 440041 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 440102 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 440163 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 440224 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 440285 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 440347 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 440408 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 440469 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 440530 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 440591 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 440652 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 440713 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 440774 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 440835 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 440896 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 440957 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 441019 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 441122 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441183 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441244 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441305 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 441366 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 441427 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 441488 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 441549 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 441610 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 441671 29 96.6 0 A............................ | A [441697] ========== ====== ====== ====== ============================= ========================================================================== ================== 28 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //