Array 1 42042-44303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHC01000002.1 Petrotoga sibirica DSM 13575 contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 42042 29 100.0 37 ............................. TCCACAGATGCCTGATCAGCCAAGGCCACTGACATCC 42108 29 100.0 36 ............................. TTTTAAATATATGTATAACTTGATACACTATAATTA 42173 29 100.0 35 ............................. TGGAATGTTATACTTTTATTAGATGGGTTGTATCC 42237 29 100.0 37 ............................. CGAATAAAGCTGTTGAAGCTAAGACGTTTCTTCCAGG 42303 29 100.0 37 ............................. TCTTTATAAAAGGGTTATAAAGCTTGAAATTACTCCC 42369 29 100.0 36 ............................. TTCTTTTTTAAATATTTTAAATGAGCTTTTAATTGG 42434 29 100.0 37 ............................. ATAAACCATTCAGGCTTTAACATTTGCAATCCTACTA 42500 29 100.0 36 ............................. TATCTTCCCCCTCATTATCCCCCCTACCCCAAATTC 42565 29 100.0 38 ............................. ATAATAGCCCATACCCAAAAAGGAACACCGTTCCTTTT 42632 29 100.0 37 ............................. AATATTGTGTTCTGCGCAGGATCAAAGATGTACCTAC 42698 29 100.0 36 ............................. TTCTGCGTATGTATACCCGAAATTCTCACATATCCG 42763 29 100.0 36 ............................. AATATTGTGTGCTGCGCAGGATCAAAGACGTACCTA 42828 29 100.0 36 ............................. CAGAAACGCTTTTCTATATTTCGTGAAGTCGATTTC 42893 29 100.0 37 ............................. ATTGTTGGCCCAGGCAACACGAAGCATATACATGCTT 42959 29 100.0 39 ............................. ATACCTCCCTATAGTAGTTGGTTGCGGTGATTCTTGCCC 43027 29 100.0 38 ............................. ATTGTTTTCATGTTCTATGACTAGCACAACGTTGTTTT 43094 29 100.0 38 ............................. TCCAGCACACTATTGAACGACTGCGTACTTTTTTGCAT 43161 29 100.0 38 ............................. TCGTCACCAAACTGGCGCAAATAGTACTTGTTCAGAAC 43228 29 100.0 39 ............................. CTGCGAGGCGTAGTATGACGCATCAATTTCCATAGCAGC 43296 29 100.0 36 ............................. CTTGATAACGTTCCCATACCCCCAGTTGTAGCACAT 43361 29 100.0 37 ............................. TCGTAATTCATTATGTATTTTATATCAGTGTAAATTT 43427 29 100.0 37 ............................. CTGACATTCGTTGATAATCCCCGATCCAGATTTCATT 43493 29 100.0 37 ............................. TTTCAAGAAAAGAAGTTTCTATCAAAATATTCACAGG 43559 29 100.0 35 ............................. TTTTATTATCTTCCTCTTTATACTTCAACCTTAAG 43623 29 100.0 36 ............................. GTCGCAAACAGATATCTCAACGATCGCATACGTTTT 43688 29 100.0 37 ............................. TCTTTCACCTTTCTGCAATACTGGATGAATTCCTTGA 43754 29 100.0 38 ............................. ATGGACGCTGCTACCTTCTCAAAACCCGACAAGTTCGG 43821 29 100.0 36 ............................. TTGCCATTCCTGAAGTTCCTTTTGGTACTTTTCATC 43886 29 100.0 35 ............................. AAGACCAATCACTCTCATTCAAGCTCGTGTCTCTG 43950 29 100.0 37 ............................. TTGACACTCAGAGTATAGGTACCGGGAGCGGAGTATG 44016 29 100.0 36 ............................. TTATCCAAATATAGTCTATGCGCGGTTCTCAAGGAG 44081 29 100.0 35 ............................. TTGTAATCTTGGCCGCATCAAGGTTTGCGATCTTG 44145 29 100.0 36 ............................. CACGAAGCATATACACGCTCGCCAAAATGAGTGCAG 44210 29 100.0 36 ............................. TTTTTTCCTCCTTTTTTTTCTCTCTTCTCCCCAATG 44275 29 96.6 0 ........A.................... | ========== ====== ====== ====== ============================= ======================================= ================== 35 29 99.9 37 GTTTTAATCAACCAAAGAGGAATTTAAAT # Left flank : GATACAGTAGCGCTTCAAAGCTAGAAGCTCAAAGTATGTTCAGACAGGTTGCAAACGTTGATGTAGTTCCAGAAAATAAAATAGACGATTTTGTAAATGAGCTTAAAACCTATAAATTTTCTGATTATTCAGATTTTAAAAACAAGATACTAAACGAGTATGTTATCTCAATGAATTATTTTTTAGTGAATCAAAACCTAAAAGAAATACCCATAAACGGAGAAATAAGTGCAACAATTCGTAAATGGTTAAGTGGAATAAAATTATGTACCAATCTAACTTACGATAAAGAACTCGGAGCAGTTTTGAATAAAGAAAAAAACAAAGTAGAAAATCCATTTATTTGATTTAATATTTTATTAACAATGATAAAATCAAAAGCTTGATTAATACTGACATTTTGCATGTTCAAGAAAACCTAAAAAAATCATTGGAGGTTTGACGCAAAATGTTAGATATGAGTTATTTCTAATCCTTAATCAATCATATTTTTGATAACC # Right flank : TTGAAAAGCTGGCAGCTAATTTAAAAGAAGGAGAACCTTGTCTGTATATAGCTGCCATTTTTTCCTGGTATTACCTCGATTTTTGAATTAATTCTTTCTTTTAATTCATTTACATGAGATATTATGCCCACCATCCTTCCAGAGCTATTTAACTCTGTTAATACTTCAATCGCACTATCAAGAGAGTTTGTATCTAGGCTGCCGAATCCTTCATCTATGAAAATCGTATCTAAAGATATTCCACCAGCTTCGCTTTGCACTACATCGGCTAACCCTAAAGCAAGAGCTAGTGCTGCTTTAAAACTTTCCCCTCCTGAAAGTGTCTTTATTTCTCTTTCTTTTCCAGTGTATATATCAAAAACCATGATTTCTAAACCTTCACTTTTCCTTGCATCAAGTACCTTAGAAGATCTATGCAATTGATATCTTCCATCTGTTAATTTGTTTAATCTTAGATTCGCTTGAGATAATATTTCTTCAAAATAATAGGCTAGTACATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCAACCAAAGAGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 9734-10135 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHC01000037.1 Petrotoga sibirica DSM 13575 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================= ================== 9734 30 96.7 36 .................A............ TTGTCTTTTAGCCATACAGCTACATTTCCAGTAATT 9800 30 96.7 36 ...................A.......... ATTCTATCTTTAAATTTATTATAACTCTTCTCAAAA 9866 30 100.0 37 .............................. CTTTTCTAGAATGCTGTCAACAAGTTCAGCCAAGTCG 9933 30 86.7 56 .................A.........GGG TAGGTGGAGGAATGGAAACATCGACGTTTTAACTCACCTCGATATTTGTAGTACGT 10019 30 90.0 57 ...........................GTG TGGGTGGAGGAATGGAAACGCTGAAGACATAGCAACTGAAGGGCATGAAGAAGTATA 10106 30 90.0 0 ...........................GGT | ========== ====== ====== ====== ============================== ========================================================= ================== 6 30 93.3 45 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : CAGGCTGTGTCACCTGTACAACATGTGGATGGTCAAAGTGTTCTTAAATAATATACAATAAGAAACAATACTAGAATTTGGTTTTGAAATAGGTGATATAGCTTTATTAAAAATTGATGGAACAAGCGTTATTGTTCCTTTTGTTACAACTTATGGTTATGTCGACAGAGGCAATCCCATTGTTGCAATAACTTTATAGCCCGCCTTCATGGCGGTTTTTTTGGTTTTATTATTTTTTTTGTTCACAGTTTAGATAAGTTGAACCGACTTAATATAAAATAATGTTAACAAGTTAACCTAATAATAACGTAGAAAAGAAAATGATGAAAAAAACCGTCTGTCGACCTCCAATAGGGTAAAAAACCCGGGGGATCGACAGACAAGCGAAAAAAGTCACAAGCCCTATTACATGCGCTTTTGAATTGAATCTTAACAAATTCTCAAAGTTTTGCTTGACAATCGTAATTTTTTATGATATAGTATTTATAAGTATCTTATGC # Right flank : TAGGGGAGGGGAATGGAAACGAGATTGCTTCAAAGCTTCGATGCAGTATGTTCTCGCTTTAAAAGGATTTTGATGAATTGAAGGCTGGGAAGGAATGGAAATAATAGAATCTTTAGGCTTCGACATGTTAAACCTTAAATTTTTAACTAAACTTTTATGAATGAAACCCAGTAAAGAAAACATGGCCTGGTAACTTAGGGGGAGATTTTTTAATTTCTTTTGCCCTTAATAATGCAAGATATAGTAAGATTAAAAACGAGCTAGTATTCCAGCTTTATAAACTTCCATAAAATGCTTTCTGATTTTTAAACAAACCTTAATAAAAGAAAGAAATGAAAACTTCTAGCTGAATTCTTTTGAAAACCATTACCTTATAACCTTTTTACTCTACCTATGAGGAATGGAGGGTGGGGTAGAGCAATGGAAACAATTTTATTTCTAAGTTTCCAAGTAGTGTTCTCTAACCTTTAAATCATAATTTTATGAATGAAAGAAAGCAA # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:-0.42, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : CTTTTTATCCTACCTATAAGGAATGGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //