Array 1 84946-94525 **** Predicted by CRISPRDetect 2.4 *** >NZ_POXU01000005.1 Neisseria weaveri strain C2013013825 C2013013825_S37_ctg_946, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 84946 33 93.9 34 CT............................... ACAAAAATTTTTGTTCACATAATTCTCAAGCCCC 85013 33 93.9 34 CC............................... AGACACCCGTCTTACCCGCTTAGACTGGCAAGAA 85080 33 93.9 33 TT............................... AAAAATCGCTAGCAGGCCACCAAAACGCGTAAA 85146 33 93.9 33 TG............................... AGATTGTCGGTATCTTTGCTTTCCGAGTTCGAC 85212 33 97.0 33 .G............................... AAGCTTACTCAGCAAGCCTACATCACATCCAGC 85278 33 97.0 34 .C............................... ATTCCTGCCTCCTGCCATTCGGCATATTTGGTAA 85345 33 93.9 33 TT............................... CGCTGTGTAAACGGTGCAATTATCTCTCAACAG 85411 33 97.0 33 T................................ CCTGTCGTTTGCGGATGTGATTAACCGGGACGA 85477 33 93.9 34 TC............................... GCGCTTTACAGACTTGCAGAAGCGCATCAAGAAC 85544 33 93.9 33 CT............................... AAGCTCTGCGGAATTGCCGGATTTCGGATCATC 85610 33 93.9 31 TC............................... AACCCATTAAGAAAGGCTGATTGAATGCAGA 85674 33 100.0 34 ................................. ACGATTGACCAAAACGGCAACATCACAGCTACCA 85741 33 93.9 32 CC............................... CGTAGGGGTGCCGACAATCGGTATCGGCAGCA 85806 33 93.9 32 CC............................... CTTGAAAGGCGCAATGACTTATTATCAACAAT 85871 33 97.0 32 C................................ GCGGTTGGGTGCTTTGGGTAGTTGACTGATAA 85936 33 97.0 31 .T............................... GGTTACTTTTGTGGCCGCCTACCGACTGGCC 86000 33 100.0 32 ................................. TAACATCCGCCAGTGTTTCATGCCTTGAGTCA 86065 33 100.0 35 ................................. CGAGCATAGGCACGTCTGGCATCATCACTGAAACC 86133 33 93.9 32 TG............................... GACACGCTGGACTTACAGGCTCGCCAAGACTT 86198 33 93.9 33 GG............................... AGCAAAATCGCCAAAATCCCTTGCATCCGGCTC 86264 33 97.0 33 .T............................... CATTAACTGTGATGTTATTTGCGATGTGCATTT 86330 33 93.9 31 TT............................... ATAATCAAGAAAGCTATGAGTGTTCTTTCCA 86394 33 97.0 33 .T............................... CGTTTTTATCTGTCAAATAGGCGTATCGGCCTT 86460 33 93.9 33 TT............................... AAAGGGTATCAGCCGTGTTTGCACGATGTGTCT 86526 33 100.0 34 ................................. CGCAAAACACTCGGCTATGCGGTACAGGTTCCAC 86593 33 93.9 33 GC............................... ACCCGCGCCTTTAAAGACAACGTGTACTACTCC 86659 33 97.0 32 G................................ GTCATCCCAGCCCCACACATATTCGCTCTCAT 86724 33 97.0 32 .C............................... CGTTTTGGCTTTAGCAAATACCCGGCTCCCGA 86789 33 93.9 32 TT............................... AGGTGTTCTGTAGGGTGTGAGTTTGTCTTGAT 86854 33 97.0 34 G................................ CGAAACCATCATTGGCAAGGCCGCCGTTGGGCAT 86921 33 93.9 33 GG............................... CGGAAAGTTGGAAAATCTGAAAGCGTTTTTCAC 86987 33 100.0 32 ................................. AATACTCCTTTGGTTGTTAACTTGTCTTACTC 87052 33 100.0 32 ................................. GCCGATAATGCGTAGCATATTGTCCGCGCCCT 87117 33 93.9 32 TT............................... TCTGATCAAACGTTCTGCCAACCATGATGCTC 87182 33 93.9 31 GG............................... CTGCTCATACACTCGCCATACAAGACGGGTG 87246 33 93.9 33 TC............................... ACCCAATCGCAGCCTGTTTTGTGGTCAATCAAT 87312 33 97.0 34 .G............................... CTTGCACAGGTTTTGGATCATACTGTCATGGTCT 87379 33 93.9 35 TC............................... TACATCCCTCGTTTTAATCAATTTATAAAAAACTT 87447 33 97.0 33 .C............................... TGGATTGACTGTATAGAAGACGATGCACATAAA 87513 33 100.0 35 ................................. CAAGCCATAAAACCAAAAATAGCTACTAAAGCCCA 87581 33 100.0 32 ................................. AGACACTCGGTGATGAGGCTAATGTTGCTACA 87646 33 97.0 31 .G............................... TATCCCCCACCCTCTGCCACGTGGCGAACGC 87710 33 93.9 32 CG............................... ACGCAAGAAGCTCCAAATCCACGTGCAGAACG 87775 33 97.0 34 .T............................... TTATAGGCTTTTGATTAGTGCTCAAAACGAGGCA 87842 33 100.0 33 ................................. TTCCCCTGAAGGCCACACCCATTTATACTGACT 87908 33 93.9 33 TG............................... CTGCTCCCTGCCCTGCTCCTGCAGGGCTTTCAC 87974 33 93.9 31 TT............................... CAAAAAGCCGTAATCATAAAAATTCTGATCG 88038 33 93.9 32 CC............................... CAATCGTAAAAACTGTGCTTATCCCGAACAGC 88103 33 93.9 31 GT............................... AAAAAAAAATTTCATCGCTTGCCTTGGCCTT 88167 33 97.0 32 G................................ ACATGATGGATTTTTACTATTTTTTAGGTCTA 88232 33 93.9 32 TC............................... AACTCTCCTAATTAAATTAGATGAGGCGTCTT 88297 33 93.9 35 GT............................... TTTTGTTTTGCGTCAACAAAGAAGCCCCGTTGTAC 88365 33 93.9 34 TT............................... AAGGAAAACCTGTTAAAGTCGGCAGGTATAGAAA 88432 33 97.0 32 .T............................... TGAAACGGGGCTGCACCTTGCGCGGCGGCTTG 88497 33 97.0 33 .G............................... CGTATCCATGGATAACGATGTCTCGGCATATAC 88563 33 93.9 33 CG............................... ACGCTTTCAGGAACTTCAGCCCATGCTTGAGTA 88629 33 93.9 31 GC............................... TAAAAACCTTTCAAAACTGTTGCATAACAAG 88693 33 93.9 32 GC............................... GATGCTGCAATCACAAAGGCGGAGAAGGCGGG 88758 33 97.0 34 T................................ GGCGTTGTATGTGCCGGATGTGATATAGGCTTGC 88825 33 93.9 32 TG............................... TTTTTGGCATCCGCCTGAAAAAACGGGTGTGA 88890 33 97.0 32 .T............................... GGCAATGGTTTTCAGCAGCACTTTGGCGGTAT 88955 33 97.0 33 .G............................... AAAAAGACCTACCACAACAACTTTCGACAAAGC 89021 33 93.9 33 CG............................... CTCAACTAATAAACGAGACTTTAGCCCATTAGT 89087 33 93.9 33 CC............................... AAGCCGGCAAAAGCGGTGAATTGATTGGCGGTT 89153 33 93.9 33 TT............................... CATTTAACTTGTTGACGGGCAACATATCATCTT 89219 33 97.0 33 .T............................... AAGCGTTAGGTAAGCCCCAAGATACGGGGGGAG 89285 33 97.0 32 T................................ GCCTATGCCTGTGATGGTCTTTAATCGTTTAC 89350 33 93.9 33 GC............................... ATATAAACCTGAAAAGTGTGTTTCGGGAACTCA 89416 33 97.0 33 .G............................... ATTGTTGGCCTGCAAACTGAATGCTCAATTGTG 89482 33 93.9 34 GG............................... AAAATCCGCCCTCAATTGTTCGTCCGCGCCGCCG 89549 33 97.0 32 G................................ ACATAGCCCGCATCCATTTTTTAAACATAAAG 89614 33 97.0 32 G................................ CCGTATATCAGCAATGATTAACAGGGAAGACG 89679 33 100.0 35 ................................. TCGGACTTAATCCGGCGAATGAGACAAATTGGTTG 89747 33 97.0 34 G................................ AGCACATACGACGATTGCGGATAAGGCAGCGATA 89814 33 97.0 32 C................................ AAGGAAGTGATGCATCTTTTCAGGGTGTAGAA 89879 33 97.0 33 .G............................... TATGACTGATTTGCTTAGGGCTTATCTTTATAC 89945 33 97.0 33 C................................ TATGTTTTAAATTGTGTTGAAAAGAATCCTGCC 90011 33 97.0 36 G................................ AAATCTATGGCTTGTTTATGCTAAAGCATTTAAGGG 90080 33 97.0 35 T................................ TTTAATCATGTGAAACTTTAATCCCGTCAAGGCCG 90148 33 100.0 34 ................................. CTGCGATATAAGCTAAGTTCATGGCATCTGAAGG 90215 33 100.0 34 ................................. CAAAATCTGAAAAACAAAGCGAAGTACGCACTGG 90282 33 97.0 34 C................................ AGGGCTTGAGGCTTGCGCCTCAATTTTTGGCTTT 90349 33 97.0 34 T................................ TAGCGATATTTTCAAATAATGCCTTAGCTGAAAT 90416 33 100.0 34 ................................. AACGCATCAGACCGCAAAGCCGCCAAGCAGTCGG 90483 33 97.0 34 C................................ GTTGCAATATGCCTGAAACAGGCAGGCCGTGCAA 90550 33 97.0 34 T................................ GGATTCCGCCGCCTTGAGAATCTGCAGGCGTATA 90617 33 97.0 35 T................................ GATATAAGGCGGAACAGGGCGACCGGCAGCGCGAA 90685 33 97.0 33 C................................ TATATTGCAGGCGGAGGAGTAGTGCTTAATATT 90751 33 97.0 33 T................................ GGAGGCAGCGAGAATTTTGAGAAACTCGAAAAG 90817 33 97.0 34 T................................ CATGTTAACTTTGACTGCTCCACATTATGAAAGT 90884 33 97.0 33 G................................ ACATTTTGCTTTTTACTGATTGTGAGCCTCGGA 90950 33 100.0 34 ................................. ACGCAAGAAGCTCCAAATCCACGTGCAGAACGAT 91017 33 97.0 34 G................................ TCATACCGAGCTTGTTCATAGCTACGTGCCAATG 91084 33 97.0 33 T................................ CGTATTCATTTTGGCTAATCGCTCGGCTCTGCG 91150 33 97.0 33 G................................ CGTATTCATTTTGGCTAATCGCTCGGCTCTGCG 91216 33 97.0 33 G................................ ATTTCATAGGAAAGGCAGAAGTAAGTGAGACAT 91282 33 97.0 34 T................................ GCCCATGCGTCAAAGTGCAGCGTGCCGTCCTGCT 91349 33 97.0 33 C................................ AGAGCGTACCTGAGCCGAGAAACCTCGGGTGGC 91415 33 97.0 34 G................................ TATGAACCTGCCTTTTGAATCGGTTACATAACGG 91482 33 97.0 35 C................................ ATTTTCCATACTCCGAATCCATGATTTTTCTGACG 91550 33 100.0 34 ................................. ACGGTGGGTATCCAAACCCGCGATGAGGCGGTTG 91617 33 100.0 34 ................................. GGTGAATTAGTGACATTTGAGACCCCTTTCAAAA 91684 33 97.0 30 G................................ GAGAGCGATTTGGAACATTGATTTAAAACA 91747 33 93.9 34 C.T.............................. TGCAAAAGCGTGAACGCTATTACCGCCAGTTTCC 91814 33 97.0 35 G................................ TTAGAGTTATTGAGAGTTATTCTCAAGTGTGTACG 91882 33 97.0 33 .....................A........... CTTGTTAAGGTTGGAATAGGCACGTTGTCATCA 91948 33 100.0 36 ................................. ATAATCAGGCTCCCCTTGATTGTCATCCCAAATACA 92017 33 100.0 34 ................................. TTTGTTGACGTAAAACAAAAGAATAAGCAGAACG 92084 33 100.0 35 ................................. ATGATAAGCTGCCTGCTGAAATTAAAAAAGTTTTT 92152 33 97.0 32 G................................ TACAAGTCTCATACCGATTACAATACGCAACG 92217 33 97.0 35 C................................ AAGGTCAGCTTTTAGGCTATGTTCAAGAGCAAATA 92285 33 97.0 32 G................................ TCTTGAGAAAACTCAAAAACGTTACCTTCATA 92350 33 100.0 36 ................................. TTCGGTTAAAGCATTTGGGGATGGGCCATTTCCCTA 92419 33 100.0 34 ................................. CGTATTAGTGGCAACGCCTTTGCCATCCCAAACA 92486 33 97.0 33 G................................ TCACAGTTCTTTTAGCAAAGTCTTCAGAATTGT 92552 33 97.0 32 T................................ GGCTAATGCTTCGTAATATGTGCCTGTTGCTT 92617 33 97.0 34 C................................ AGGATTGTTATGTCAGTTATTTCCCGATATTTTA 92684 33 97.0 34 G................................ TGTATCATGACTAATTCTTGCTCGTGTCTTGTAA 92751 33 97.0 34 T................................ TCAAGAGCAGAAAGAACTTTTTGCAAAAGCCTTA 92818 33 97.0 35 G................................ TGCAATTTCAGAAGGGGTAGTTTCTGATTTTGGCG 92886 33 97.0 34 G................................ ACAAAGAACTTAAAAATGTTTTACCTCAATACAG 92953 33 97.0 33 T................................ AAAGCAAGAATCAGGCTTGTATAAATTGCAAGT 93019 33 97.0 34 T................................ CGTATTAGTGGCAACGCCTTTGCCATCCCAAACA 93086 33 97.0 33 G................................ ATAATGTTTTCCTTTAATGTTTTGACCATTCAG 93152 33 100.0 35 ................................. TGTGAGAACGGAAAGGGATATTGCAAAGATGTTCG 93220 33 97.0 33 G................................ CAGTTCATGCCTGCTACGGCGCGTGAATACAAA 93286 33 100.0 34 ................................. TTCGGCCAACGGCAGATGCGGATTGGCCGCAATC 93353 33 100.0 34 ................................. TGTATCTCTCCCCTGAAACGGGCGATATCGGACA 93420 33 97.0 34 T................................ ATGGCAGAGCCAGTGTGTTTTATCAGGCTGCTAT 93487 33 97.0 35 G................................ TCCGATTGAAGCATCAATTGCAGTTGGTCAGCAGC 93555 33 97.0 34 T................................ TGTGGAAAGTTCACGGTATTGATGCATATGAGAA 93622 33 100.0 33 ................................. CTTATGAGCCGACCTTGCCGGTTCATACTTTTT 93688 33 97.0 34 G................................ AAAGCAAGAATCAGGCTTGTATAAATTGCAAGTT 93755 33 97.0 36 G................................ TCAATCTGTTGGTCAAGTGTTAAATCACGGCCAAAA 93824 33 97.0 33 C................................ ACGGACACGAATATGCTTTTATTGGTTGGAACG 93890 33 100.0 34 ................................. GACCAGCGCTTTCAAAATAGGGTCTTGGGTGTTC 93957 33 100.0 35 ................................. TAGCTGCTGTTCCAGATTCGATATTGTGGGCATGG 94025 33 97.0 37 C................................ AACTGATTTTGGCGGGAAGGTCGACACAGCTAAATTA 94095 33 100.0 33 ................................. AACGGGAGACGGACATTGCGCCGTTTTATCGAA 94161 33 97.0 34 T................................ ATTGAGTTTCCAAAATCTTTTGAAACAAAACCTA 94228 33 97.0 33 C................................ AGGTTTTAGCCCCCGATCCCTTTATGGACGGTT 94294 33 97.0 33 T................................ GCTTACAGGTGTCCATGTGGTAACGTCAAGTGT 94360 33 97.0 34 C................................ AGCAAACGAAGTTGCCGTTTCTGTGGGCAATATG 94427 33 100.0 33 ................................. TTGCTATTGAACATGCTCCAGGTAAATATCAAC 94493 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ===================================== ================== 145 33 96.8 33 AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAATAAGGGAAAATGGCGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGGCGCAGATGGGCAGGCGAGGCTGCGGCGCATCGCCAAGCATTGCCTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTGAAACTCAAAGCCAAGCTGCTCGACACCTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAACACCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAGGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGGTGGTTAGCGATGCAGGATTGTTCTTTAACAATCAGGACATTAGGAAAGCGGGTGTGGCGGAATAAGGCTGTGTTATACTCGCTTTTCGCGTTTTCGGAGAGCTTTAGCGAATCAGGGCCGTGCAAGCCTTGATGGATAAAGGTTTCCGAGAAGG # Right flank : CACGGATACCGACGGCAGTGTAACATCGCGCGCGTTTTGTCACCATTTAGCGATTTTTTTGTCACCACCCGACAAACAAACTGGTGACAAAAAATCCGCTAAAACAAACCCCGTTTAAAGATAGGTTAAACGGGGTTTTTAAACGCCTAAAGTTTGTACACCAGATTATCCTCGTATGAGGCATATTTGCTGACCTTAGCCTGCACGGTTAGCCGGGTAGAGTGATCAAATACATGCCAATTATCCAGCTGCATAGACACGACCGCATCAATATAGTCGATAAACTCCGACCGCGTAGAGCTGAAAAACAGATATGGCGGGCGTACAAGATTGACAAGTTTGAGGTAATCAACCAAGCCGAAGCGGCCGTCTTGAGCATAAGCCGCTTGTGTAGTGGATAAATAGGGCGGATCAAGCACCAACAATGCTTGCGGGTCGTCGGAAAACTGCGGAATCAACGTCTCGTAAGACTGGCGGGTTGTCTCCAAGCCGTCCAAGTA # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //