Array 1 1674783-1679553 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGSF01000001.1 Oligella urethralis strain NCTC12964, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1674783 28 100.0 32 ............................ ATCGCACCACCAAATGCTGCTTCGTTTCCTGC 1674843 28 100.0 32 ............................ AAAGCCTTTAATTGATCAGGGCTCAAACTTTG 1674903 28 100.0 32 ............................ TCTTCATTGTTTAGTTCATAGTAGTGGATGAT 1674963 28 100.0 32 ............................ TTTAGTTTAGTTTAGTTAGTATGCTGAGAATG 1675023 28 100.0 32 ............................ TTATTAGGCACGTCGGGATAGTGATGGGCTAA 1675083 28 100.0 32 ............................ TGGCGCGGGAAAATCAATTTTGCCGCGCGCTT 1675143 28 100.0 32 ............................ ATCTGGCAGTAGCGCTCAAGTTCCCGCTGCTC 1675203 28 100.0 32 ............................ TTAATCTCAAAGCTAGCTAAGTAATGCCCGTT 1675263 28 100.0 32 ............................ TCGGAGTATCCACCGAAGCTTGAAGACGTAAA 1675323 28 100.0 32 ............................ TCAGCAACACGATCCATCATGATATTCCGTAG 1675383 28 100.0 32 ............................ TTTTGAAATAGCGTCAATCAATTCAGGCATTT 1675443 28 100.0 32 ............................ TTATCGTGTTTCAAATCACTTTAAAGGAATCA 1675503 28 100.0 32 ............................ TAAATGTTGTTTATCTCATTAACTTTATTATA 1675563 28 100.0 32 ............................ ATGCGGGTTTAGCTTTTTAATCGCTGACTAGG 1675623 28 100.0 32 ............................ CAAACAGCCTAAAAATGGCTTTAAAATTGATT 1675683 28 100.0 32 ............................ AGTAGCTCCAGGATGGTGCGTGTTTTGAACAT 1675743 28 100.0 32 ............................ ACTTGAAACAGCTAAACACTTGCAAAATGCGC 1675803 28 100.0 32 ............................ TTGCAAAAAGGAAAAACCCCCACTTGAAACAG 1675863 28 100.0 32 ............................ CCCACGGATACCGGATGGCTGCTTTCGGTGAG 1675923 28 100.0 32 ............................ ATTAAGCACTCCCATAGTTATATTCACCGTCA 1675983 28 100.0 32 ............................ AAAAAAAGTTAAAAGGTTATCGCAATGCAAAT 1676043 28 100.0 32 ............................ TGATTGGGCTTTGACTTCAATGACTATTTTAT 1676103 28 100.0 32 ............................ ATTTGCCCTAGCCTTTCGTACACACTCCGATC 1676163 28 100.0 32 ............................ TCTTTTTGCGCGTAATAAAAAAGAGTACCTAT 1676223 28 100.0 32 ............................ ACTATCTCAATTCTGATTGCTCAGTGGTTAAG 1676283 28 100.0 32 ............................ ACAAACCGGTGCCATCAACCGCGCTTGTGTAC 1676343 28 100.0 32 ............................ CTACGCTTGTAAACTCAGGTATTAAGCAAGGT 1676403 28 100.0 32 ............................ ATATTTCGAAGATGTATCTGGCCACTAATGTT 1676463 28 100.0 32 ............................ GCTAGAACATACGCTAAGCTTACGCAAGATAG 1676523 28 100.0 32 ............................ TAAGACTTAATCATAGTCTTAGGTTAGTATTA 1676583 28 100.0 31 ............................ GTTAAAATTGCTTGGAAAGATCTACAAGCTC 1676642 28 100.0 32 ............................ ACTGTAATTACGTAGTGTCATATTTGCTTCGT 1676702 28 100.0 32 ............................ ACACCAAGTGGATAGGTATGTGTAGGTGCTTA 1676762 28 100.0 32 ............................ AGATTCACTTTGGAAAAGACTATTTTCCATCA 1676822 28 100.0 32 ............................ TTAATGTTAAAAGCGAAATCCATGTTTTAAGC 1676882 28 100.0 32 ............................ AATCCCATTTGACTTTTTACAGCTTGAGAAAT 1676942 28 100.0 32 ............................ AGTGGAGTATCAAAGTAATGCTAAAGCACCGC 1677002 28 100.0 32 ............................ ACGTGGTGCTTTTCATAAACCGTAGGAGATTA 1677062 28 100.0 32 ............................ ACGCCGCGCGCAGAAGCGATTAAATCAAGTGT 1677122 28 100.0 32 ............................ TTTAATATTGATGATGTCCCGCAGCGCATTGA 1677182 28 100.0 32 ............................ AATCGATATTGTACTCGAGTGGGCGCCGGTTA 1677242 28 100.0 32 ............................ ACAGGGTTAGATAATTTGCGTTCGGCAGGAGT 1677302 28 100.0 32 ............................ ACGTAGCAGGTCAACGTCAAGGCTATGAAGAC 1677362 28 100.0 32 ............................ TTATGCGTTGTCTTTACTAGACTCTGAGCTTG 1677422 28 100.0 32 ............................ AAGCTGGTTACTAGCATAGCCTTGATGCATGC 1677482 28 100.0 32 ............................ AAACTATCGCAAATAATCTTACTTTAGGTAGC 1677542 28 100.0 32 ............................ ATATTTAGCGTAGCGAGCAATATCTCCGGCAC 1677602 28 100.0 33 ............................ CTTTAAATGGAAGAAACTAAACTGACAATAGAG 1677663 28 100.0 32 ............................ ACGTCAAGCGCTCAGCTTCAACTTCTTGCCGA 1677723 28 100.0 32 ............................ ACTACGCGCGAGATTTTCAGGAGAATCAAGAT 1677783 28 100.0 32 ............................ ATTGCAAATTACTTTGAAGAGCAAGATGGGGA 1677843 28 100.0 32 ............................ ACTACCGCATCTAACTTCACCTTGCACTCATA 1677903 28 100.0 32 ............................ TCAGAGGTGATGAACATGATTGACGCCTCCTT 1677963 28 100.0 32 ............................ AAAAGATGCGGGCTATGTGGGCAAGTGAACAA 1678023 28 100.0 32 ............................ TCGATGCCAGTCATGTTTTTTTCGTCTCGAAA 1678083 28 100.0 32 ............................ AATTTATAGGCAAAACATGGAATGCATTAGCT 1678143 28 100.0 32 ............................ GTGAGTTGTTGTACCTTCTGCAGCACTAATAA 1678203 28 100.0 32 ............................ AGTACGCTTAGCAGCTAGTCGGCGTTTTACTA 1678263 28 100.0 33 ............................ TTAGTAATCAGGGCTATCACTTCAACCTACTTG 1678324 28 100.0 32 ............................ TTTCCTCCTGGTAATTACCTATTTGAATACAC 1678384 28 100.0 32 ............................ TGGCGTAACGGATTGGCGCACCTGCGCATCTG 1678444 28 100.0 32 ............................ AGTACGTCAGCTAATGGCGGTTGCTCGGTCTC 1678504 28 100.0 32 ............................ TTTATTAAGCAATCACATGCTTAATAAACTAA 1678564 28 100.0 32 ............................ ATGCTTAGGACGCTATGCAAGCTATTTTCGTA 1678624 28 100.0 32 ............................ TCTTGTCTTAAAAACAGGGCCATACGTTTAAA 1678684 28 100.0 32 ............................ GGGAGCGCTTTCCGCACGTGCCTAACCTGGGC 1678744 28 100.0 32 ............................ TCTTTGCCACCGGAGGGTTGAATTTTCTTTAG 1678804 28 100.0 32 ............................ TCGCCAGCCTTGATGCTACTTAAACCAGTGCC 1678864 28 100.0 32 ............................ TTTAGCGGTTTACTAGACCGCAACCAAGGTTA 1678924 28 100.0 32 ............................ ATAACCTAAACCATAACCTAAACCATAACCTA 1678984 28 100.0 32 ............................ TGAATGTTTCGGAATCACATTTTAAAAATAGT 1679044 28 100.0 32 ............................ TTGCAAGCCTTGCAATACGCCTAAGCACCCTT 1679104 28 100.0 32 ............................ ATAACCTAAAACAACGGTTTAAGCTAGGTTTA 1679164 28 100.0 32 ............................ ATTGTCGGATCTGCGGAACAACGGCTTAAAGC 1679224 28 100.0 32 ............................ ATGTACTGGTTGCCACACGCTTTGGCGCAATA 1679284 28 100.0 32 ............................ ACGCAAGCAACGGGTGCTTTATATTTCATCAC 1679344 28 100.0 32 ............................ TATTATCCTTATATCAGTTAAGAGGCGCCTAT 1679404 28 100.0 32 ............................ ATTGAATTCAAAACTGCTGAACAAATTTCTCA 1679464 28 100.0 32 ............................ ATACCTGATCAGGTGGTTTGGCCTTGCTAAGG 1679524 28 100.0 0 ............................ | TT [1679545] ========== ====== ====== ====== ============================ ================================= ================== 80 28 100.0 32 GTTCTCTGCCGTATAGGCAGCTTATAAA # Left flank : TCATTTCGAATATCCATGAGATCCCTAAACAGGTTCCAAGATACTTTACTTATAGTCGTGTGCAAAACAAAGGAACGAGCGATTTAAAAAGGATAAAAAAAGCAATGCAACGTAGAGGTAAAAGCGAGGCAGAGATTCAGAAGGTGTTAGAGCTAAGGATTCAAAAGCTGAAGCCTGTCACATTGCCTCATGCTCATATTAATAGCGCTTCTACTGGGCAAAGATTTTTGTTAATGATTAATCGCAAACCAGCTCCTATGAAAAGTGAAGGACTTTTTAGCAGTTATGGTCTGAGTCCTACCTCAACAGTACCTGACTTCTAGTTTAGTCTATGAGTCAATGATGCAAAAAACCCTTTTCTTAAGATAAACCAACTCTCTGCAAAGAGCGCGCTAGTACAAGGCTCACAAGGGATGATGTATTTTGAAATAGAAAAGGGTTTTATATGCATGTTCTTTAACAATTAGGATAATATAAAGGTTCAAGCATGAATTGTGCTA # Right flank : AGCGCACTTGCATTTTCATTGTTATCACAGCTGTCTCAACAAATATCAAGAATTAAATGCGAAGATTAAACGCATCAATAATATATATACTGAAGAGCGCCTGAAGGTTAGGAGCATCAAAGAAGTCAAGAAAAAAGTGATAGCACCATCTCAGCGTAAAGAGATGGCGTAAACATCACGACATCAGGATTAGCTAGTCTTGCCATGAATTCAGCTTAAATCAAAGCGGCTTTACTACCCAGCCAAGAATTAAAATAACAATGAGCTAATTGCGGATTGCTTCTTATGGCTCACTACCAAACAAAAATTGTGAGGCTTTGGTCTCTACTTTCTTCGTCTACGTAACCTCAAGGGCTTTAAGTGGAATAAAATGTCATCAACAATTTAATTTAATCCCTCCCCGGAACTGCAGTTTTACACTGCGCTTGACTATGTTAAAAAAGCAATAGCTTTATTTATTTATAAACAATTATTCCAAGGAGTTCTACCATGAGATACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGTATAGGCAGCTTATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCTCTGCCGTATAGGCAGCTTATAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //