Array 1 431751-432876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRU01000011.1 Salmonella enterica strain CVM 43803 43803_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431751 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 431812 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 431873 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 431934 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 431995 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 432056 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 432117 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 432178 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 432239 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 432300 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 432361 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 432422 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 432483 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 432544 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 432605 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 432666 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 432727 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 432788 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 432849 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449135-450798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYRU01000011.1 Salmonella enterica strain CVM 43803 43803_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 449135 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449196 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 449257 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 449318 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 449385 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 449446 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 449507 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 449568 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 449629 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 449690 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 449751 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 449812 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 449873 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 449934 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 449995 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 450056 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 450117 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 450178 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 450239 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 450342 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 450403 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 450464 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 450525 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 450586 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 450647 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 450708 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 450769 29 96.6 0 A............................ | A [450795] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //