Array 1 112854-113431 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGS01000016.1 Klebsiella pneumoniae strain GM4 NODE_16_length_139052_cov_53.642519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 112854 28 96.4 33 .............A.............. TCAGGTTTTCATCATCCTCATAGATGCCGCCAT 112915 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 112976 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 113037 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 113098 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 113159 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 113220 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 113281 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [113286] 113343 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 113404 28 85.7 0 ............T.....TA.......T | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.1 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACACGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122185-123737 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOGS01000016.1 Klebsiella pneumoniae strain GM4 NODE_16_length_139052_cov_53.642519, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122185 28 100.0 33 ............................ CCTTTTATCATTCTTCATTTGGTTATGTCCGGC 122246 28 100.0 33 ............................ TGCACCAGGTAAACTGCTTGGCACGAATACTCC 122307 28 100.0 33 ............................ CCAATATTGCGCGAAATGGAGAGGCAAGACCTG 122368 28 100.0 33 ............................ TACATGTCTTCAGTCATGCCAATGCCGGTTGCC 122429 28 100.0 33 ............................ TATTTGTGAGCACGTTACCCGTCAGCTTGTCCA 122490 28 100.0 33 ............................ CTATCACGCCGTCATAAACTTCTTTGAGGTGGC 122551 28 100.0 33 ............................ TCACCAACTCGCAGGTGGTTAAAGAGCAATGGC 122612 28 100.0 33 ............................ TGAAAAAGTGGCAGGAGGTGACAGAAGTTCATA 122673 28 100.0 33 ............................ TGAAGATAATAAGCGAGTTGTTACGGTAAGTGT 122734 28 100.0 33 ............................ CAGAGCCGTCACCATTATCTCTTGCTGTTGATG 122795 28 100.0 33 ............................ TGATGAATGATGACGGGCTGCTTGAGTGCGCCC 122856 28 100.0 33 ............................ TAAGGATATGCAGTCAGGAGGAGGGATTAGCGT 122917 28 100.0 33 ............................ TCCTTACGGATTTGCAGGCCCATAGCAGCCCAG 122978 28 100.0 33 ............................ CATTGTTCACATGGACGGGTAACTGGTTATTTA 123039 28 100.0 33 ............................ TCTTGTGCTTGCTGGTACCCCTGCGAGTTGCAA 123100 28 100.0 33 ............................ CCTGCAGGCTGGGCTTTGTGGGTACAAGTGACG 123161 28 100.0 33 ............................ TAAATAGCAAGTTTGTTTGCGGTCTTCACTGCT 123222 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAATGCTGGTGGGCG 123283 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 123344 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 123405 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 123466 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 123527 28 100.0 33 ............................ CTCAGATATCGAAATAGCCTGGCGTCAGGCAAT 123588 28 100.0 33 ............................ CAGATCAAAGCCTGGACTGAGCGTCTTAGTGCG 123649 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 123710 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //