Array 1 3896-1073 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQI01000003.1 Bifidobacterium breve strain 1889B Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================== ================== 3895 33 100.0 35 ................................. AAAAACGGTTTCAAGCAGTCGGCGAACGATTTCAG 3827 33 100.0 35 ................................. ATCGGTGCCGTCATCCTCAAGCACCGGCTGGAACA 3759 33 100.0 34 ................................. ACGCTTTAACCGATAGAGGAGAAAAAATATTATG 3692 33 100.0 35 ................................. GGTTATGCGCCTGAATATGCTCAAATAACACGCCT 3624 33 100.0 35 ................................. TTCGAGTGTCTTGAGCGGAGCCTGTTTCCCTTCCG 3556 33 100.0 34 ................................. CCTGAAGCTGCTTCATCAGCGAATCGTCAAGCAG 3489 33 100.0 35 ................................. AAAAGCGTGGCGATGATGCTCACCCAGACGGCTGG 3421 33 100.0 33 ................................. TCGCCACCACACCTGGGGCATGGCGAACACCGC 3355 33 100.0 36 ................................. TTGTCCGCGCCGTAGGTGCCCTCGCGCACCAGGTAG 3286 33 100.0 33 ................................. CGGCCGGCGCGGCGACGAGTTCGCCCTTCGCAT 3220 33 100.0 33 ................................. ATATGTGATATCATTCGTGCCGGGCATGGTTTC 3154 33 100.0 34 ................................. CCGCACAGCCATTTCTCCGCGACAGCCTGCCCCG 3087 33 100.0 35 ................................. ATTTTGAACTTTGGCAGGAAGATGATGAAGGCCGG 3019 33 100.0 34 ................................. CAGTAGTTGAGGTTGGCGGCGTCGTGGAGCATGC 2952 33 100.0 34 ................................. CAGCAGGGCAGCAAACGGCGGGTGTCAACGTAAT 2885 33 100.0 35 ................................. ATCTGCATCAAATCACTCGGCGAAGTAACCTTCAT 2817 33 100.0 35 ................................. CTGGTACCACGCCAAGAGCTGGGCCATGACACGGC 2749 33 100.0 33 ................................. CGCTTTGATTTGCGGTGTTTCAAAACGTAACCG 2683 33 100.0 35 ................................. ACGTGAAACGTTTGGAGGAACCACCGACTTGGAAA 2615 33 100.0 33 ................................. CTCATTGACATCCCCGTTATCAATGAGATGACC 2549 33 100.0 36 ................................. AACGAGGCGTCGGATTGGAATTATCTGGTGGCCTAT 2480 33 100.0 35 ................................. GCGTGACCAGTGGGACAAGTACGCCAATCCGGGTC 2412 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGAC 2346 33 100.0 62 ................................. TTGAATATGTGTACGGTGATTGCGATTTTGATTATGGTCGCTCCCCATCCGGTTTGATTATG 2251 33 100.0 33 ................................. CATGCTTGGGTCATCATTGCGCCGGCCGGTCTG 2185 33 100.0 34 ................................. TGGTTATCGAGCCACAGGGGTTCCGCGGAAGTGG 2118 33 100.0 36 ................................. GTCCAGCACCACGGTGAACGTGTCGGGCAACACCAC 2049 33 100.0 33 ................................. CACGACTTGCGTGACCGCGTCCACCTTGTTGTC 1983 33 97.0 33 ............A.................... TGACTGGGAGGGTCAGTCCGGAGGCGACCCTTT 1917 33 100.0 35 ................................. CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC 1849 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1781 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1712 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 1645 33 100.0 35 ................................. GCCGCCTATGACGGCGGCATGCGGCCAGCGGCGAA 1577 33 100.0 34 ................................. AAAGCCACCGAAGAAAAGGAGAAGTAAATCATGG 1510 33 100.0 35 ................................. ATTCTGGCAAAGGGCTCTCTGACCCCGATCGCGTT 1442 33 100.0 35 ................................. CGTGAAGAAATGCGATTGGCATCCAAGGGAATGCC 1374 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1308 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1242 33 100.0 35 ................................. TGGAAGTGGAGTTCCGGCCTTTCCAGGAACGCTGA 1174 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1105 33 97.0 0 ..........C...................... | ========== ====== ====== ====== ================================= ============================================================== ================== 42 33 99.9 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCTTGAGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCTCATCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCGGAATTAAACCGACATCGGTTTAACAGCGATTAAGCCGGGTTTGTTGTTAAGCCGGGGAACGGTTCGGGGTCTTGGTGGCTGGCCGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 120577-120000 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAQI01000011.1 Bifidobacterium breve strain 1889B Contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 120576 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 120510 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 120442 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGAAAATCTACTA G [120428] 120373 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 120306 33 97.0 36 ....A............................ GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 120237 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 120169 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 120101 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 120032 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GCCTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACCCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGTCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACATCCCGCCACC # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //