Array 1 108723-109052 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMU01000013.1 Azotobacter chroococcum strain DSM 2286 Ga0310512_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 108723 29 100.0 32 ............................. CGCGAAGTCGGCCATCTCGCGGTGGTAGAGCT 108784 29 100.0 32 ............................. GCCATGAACGGCGTCATCGCGTACAGCAGCCA 108845 29 79.3 89 ..............C..A......GTT.A ACGAAGGTCTTCGTCGGACTTTCCGACGAATGGCATCTCTTTGCCTGTCCCGGCCAGTGGGGGCTGTAACCCTGCCAATATATTCTTTG 108963 28 86.2 32 ..TA......-.................T GGACAACCTGCAACCGCGCAAGTAGTAAACGA T [108975] 109024 28 75.9 0 .C.C.......-.T.......CA..T... | C [109039] ========== ====== ====== ====== ============================= ========================================================================================= ================== 5 29 88.3 46 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CAGGATCATCCCGACCACCATCGAGGAGGTACTGGCCGCCGGCGGCATCGCCCCGCCCGAGGCGCCGCCGGAGTCCGTGGCGCCGGCCATTCCCAACCCGCAAGGCATCGGCGACGCCGGGCACAGGACGCAGTGATGGCCTTCGTCGTCGTGGTCACCGAAAACGTCCCGCCGCGCCTGCGCGGACGCATGGCCATCTGGCTGCTGGAAGTGCGCGCCGGCGTCTATATCGGCGACGTATCCCGGCGCACCCGGGAAATGATCTGGCAGCACCTGGCCGAGGGGCATGAGGACGGCAATGTGGTCATGGCCTGGGCGAGCAATCACGAGTCCGGCTACGAGTTCCAGACTCTGGGGGAAAACCGGCGTTTGCCGGTCGAGTTCGACGGCTTGCATCTGGTCGCCTTTCAGCCCCAGGAAAAGCCCGATCTTTAACAAGGAAAATCGGTAGATTCTTGGCGGCCGATTTTTTCCTTTTGAAACAATCTGTTACGCTAAGT # Right flank : GCAGGTCCGGCGCGATCGGGCATGGCCGCTCAGGCGGTCTGCCCGATTCGCTTTTTTCCTGTCTCCCGATCCCTTGCCGATGGCGTCGCTCAGCGCGGGCCGATTTCCCGGTGCAGGGCGGCGAGGCTGCGCTGGTGGGCGAGTTCGGCCGCGGCCTGATCGTAGTGCCGGCTGCCTGTGCGGGCGAAGGCGTGTTCGCAGCCGGGGTAGCTGTACAGCTCGATATTGGGTCTGCCGCCCAGGCCTGCCAGGATCGCGGCGCGGGCCTCGGCGATGTGCAGCACCAGCCGGCCGCGGATGCCGGCGGCCTCGTCCAGCAGATGTTCGATGCCGACCCCGTAGTAGCCGACGGCGCAGGCGACGTCGCTGCGGGCGGCCGTCAGATAGGCGAGCCGGCCGCCGCGTCCACCTCGGGCATCCGGCGCGTCGCCTCAAGGGTGGCGACGATGTCCGCGATGCCCTTGTCGACGTCGAACCGGCCGAAGAGGGCGAAGGCCTTT # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-2.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16639-17867 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMU01000051.1 Azotobacter chroococcum strain DSM 2286 Ga0310512_151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16639 28 100.0 32 ............................ ACCTTGCTGCGCTTCGCCCAGTGGGTGCGGGC 16699 28 100.0 32 ............................ GCCTCGCTTTCAGATCGCGCATCCCGCACCAC 16759 28 100.0 32 ............................ TTGCTGATTCCGTCGGCCAGGCGCTGACGCTG 16819 28 100.0 32 ............................ TGGACGGCAGACCCGGGTCAGTCCTCCGGCAT 16879 28 100.0 32 ............................ TTTCGTTATCGTTGATATTTGCCTGCGCATGT 16939 28 100.0 32 ............................ CTCCCAAGAGGGGGCCGGGCCGGTTAAACGAA 16999 28 100.0 32 ............................ AGCTCGGTCCCTTTCTGCATGCTGGTAATTTC 17059 28 100.0 32 ............................ GCCAAGGAATCCATGATGAAATTCTGCGTCAC 17119 28 100.0 32 ............................ CAGAAAGCCATCGAACGCCCAGCAAACAACGT 17179 28 100.0 32 ............................ CAGGGCAGACGCTAATCAGCGCCTGCGTTTAA 17239 28 100.0 32 ............................ TACAAAACCGCGCTTCACTCCAGCACCGCCCC 17299 28 100.0 32 ............................ TGGAGACGACCCCGATGGGGAATGGTGAGTTC 17359 28 100.0 32 ............................ GTCAACGTACAGAAGAGGTTTCATCAATGTTT 17419 28 100.0 32 ............................ CTTGAACGTACCTCGACAGAAACAGGCTCACT 17479 28 100.0 32 ............................ AGTCTGCCGTGATTGAATATGCCGCGTTCGAC 17539 28 100.0 32 ............................ ACCCTGGCGCGGGTCAGGGCCTCGCCCATCTG 17599 28 100.0 32 ............................ ACTCCCAATTGAGTTTGCCGCCGGATTGGTCG 17659 28 96.4 32 ......................T..... TTTATCTGGCAACGTACCAGTCCACGTCGAAT 17719 28 96.4 32 ................A........... CAACAATGCCCGCGCCCGCCTCGAGCGGTATT 17779 28 100.0 33 ............................ CAGCCGCCGGCGCTGACCGGCCTCGGATATCCC 17840 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TCTGCAGTACGCGCGTCCGTGAAGGTTGGCCAGATCAGTAGTGGGCCCCTGCCGGGCGAGGCTAACCCCCGTCTCTCACCCTGTAAGCCATCGCCTACAGCAGATCGAGAGCTTTCCCAATTTGCTCGAGGCGGCCCCTCGGGTAGATTGAATCCCACCAAGACGTCGAAGGAACGACGCAGGCTGACCAAGGATGGCAGCTAAGGGAAAGTCGCAGGATAAGCGGCTACTTCGTCAGGATGACGAGCACACGGACGGAAGGAAACATGAACGGCGAGGCTAACCCCCTCGCCGTTTTTGTTTGTGCTGAGAAAACGCGGCTTGACCTCCTCGGGGTTAAGCAACGGCGCAACCGTTTCCCCTGCTATGACCATTTTTTCCAAGGTGAACTGTAGGCTCTTTAAAAACAATGACTTACATATTCGCCCAGTTTTATGGGGCACAGTGCTGCGAGCTGGATTTTTCCTTGCCAGACAAGGTGTTGGCTGTTTGAATCGCTA # Right flank : ATGCACTTGGGAGCAGCACCACAAGCCGGTACCCTTTCCCATGATTTTTAAAGGGAATTTCAACATGATCGAACTGCAACATATCAGCCGCCTGCTTTGCTCCGCTCTCGCTGCTGCCCTTCTGGTTGGGTGTGCGAGCAAGGAGCCGCCGGGGCCTCAGGTCACGCTCCAGGACCCGGAGCAGACTCCGCGCGAGAAGTGGTCGGACGCGATGAAGATTCTGCGCGACGATCTCGGCATCAAAGGTCAGAAGGACGTACCGGTCGAAACCGCTCGCCAATATGGCCTGATTGCAGGCGTGAGCAAGCCAACCCGAGGCAATGGGGGCTCAATGGGTGACCTCGCCTTTGGTGGCGTTGGAGCAGCGCTGTTCTTGATCCCAACCGGGGAGGTAATGGGGCCTTGGCAAAAAAAACAAGCTGCCGCCTGGGTTCCCGCTGGGAAGGCCAACAGCATGGCCGAAGCAATTCAGATTGCTATGGATACTTGGAGCAGGGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 130832-129543 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMU01000006.1 Azotobacter chroococcum strain DSM 2286 Ga0310512_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 130831 28 100.0 32 ............................ GCATCGGCGCGGCCATGCTGCCGCTGCTGCTG 130771 28 100.0 32 ............................ TGCCAGGGCAACGTCGAGTACCCCGAAGACGA 130711 28 100.0 32 ............................ GGGCTGGAGGTGCGCGCGGCGCTGTCTATGGC 130651 28 100.0 33 ............................ CACCAGGAACACGAAGCCGGCCGGCTGCTCGCC 130590 28 100.0 32 ............................ TTGGCCATGGCCGTAGCGGCCTTGGCGGTTTC 130530 28 100.0 32 ............................ AGAGAACCACCGATCATAACCAGCATTACCGG 130470 28 100.0 32 ............................ ATCTCGGCCAGCCTGCGCTCGAGAGCCGTGGC 130410 28 100.0 32 ............................ ACAGGCCGCCCTGGCATTGGGCGATGTGCTCT 130350 28 100.0 32 ............................ ATCCAGCGCGGCGTCGATTGCTCGAGCATCAG 130290 28 100.0 32 ............................ TGGACGAGATCACGGATAGAGCGGCTGATCTT 130230 28 100.0 32 ............................ GGCCCGTGGCGGCAAAGGCTCGCCCGGTCTAC 130170 28 100.0 32 ............................ GCCACCAGGGCGAACACCTGGGCGACGAGCAG 130110 28 100.0 32 ............................ TGTCTCTGCGCTGGGCAGGGCCTTTTGAGGGC 130050 28 100.0 32 ............................ AAGACCACTCCCCTGATGCCGCCCTGGCCTAC 129990 28 100.0 32 ............................ GCCGGTTCAGCATGCCGAGCGGGAGAAACCTC 129930 28 100.0 32 ............................ GCTGCCAGGGGCGTCCACGATTTTCAGTTGCT 129870 28 100.0 32 ............................ ATTGACGAGCGATTGAAGGTGACTGCGATGGA 129810 28 100.0 32 ............................ TCGCCGACCCAGCCAGCGCAGCAGAGCCAGGC 129750 28 96.4 32 ........T................... TGGTGAAGCTGCGCAACAACTGCATCGGCCAA 129690 28 100.0 32 ............................ TTGAGAAACCCGACCGCCATGCCGTCCAGCCC 129630 28 100.0 32 ............................ ATCCGGGAAGCCGAACCCAGAAAGCCCAGAGC 129570 28 92.9 0 ...........TG............... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.5 32 CTTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GCTAGAGGCCCTGATGGCGCTCGACTGGCTGAGCGGGATGCGCGACCACGCCAGCATCGCCGAGCTGCGGCCCGCACCTGCGGGAACGCAGTACCGGGTGGTCCGTCGCGTCCAGTGCAAGAGCAGCCCCGAACGCCTGCGCCGGCGCCTGGCAAAACGGCACGACCTGAGCGAGGAACAGGCCCGCGAGCGGATACCGGACACGACGGAGGGCCGCCTGCTGAACCTGCCCTTCGTCTCCCTCCGCAGCCAGAGCACTGGGCAGAATTTCCGGCTGTTCGTCGAGCATGGCGAGCTGCTGGAGCAACCGCTCGCCGGAACCTTCACAACCTACGGCCTGAGCAACGACGCGACCGTTCCCTGGTTCTGACCATTTTTTCCGGGGCGAACTGCAGGCTCTTTAAAAACAAGGACTTGCACCTTCGCCCAGTTTTATGGGGGATCGCGCCGAAAACCGGATTTTTCCTTGCAAGGCAAGGGGTTGGCTGTTTGAATCGCTA # Right flank : GTCACTTCCCGCTGGAAGCGATCCGCCCGGAGCTTCACTGCCGTGCAGACTGTTCGCCGGGCGCGGAGAACGGAGCGCCAGGAGCGGCTAGAACCTGCCCCGCCAGACGATCGCCAGGGCAGCCAGCCCGACGCACACGACCAGCCCCTGCATCGCCGGCAGCAGGCCGATGGCGTCGACCAGCGCGCCGATGCCGAGGATGCTCAGGGCGCTGCCGAGGTAGCCGGCCACATAGAACAGCGAGCTCAGGGCGCCGCGGTGCTGCGCCGGGGCGATGGCGGCCAGGCGGCCCATGGCGCCGACGAAGGCCGCGCCGTAGCCGACGCCGCTGCACAGGGTGAACAGGCAGAACCCCCAGGCCTGCCCGTACGCCAGGCTGGCGGTGCAACCGGCCCAGCTGGCCGCCAGCAGAGCGCAGCCGACGCGGATCGCCCGCCCGGCTGGCATCCGCCGGCAGAGGAACTGGGTGGCGCCGGCGGCGATCTGGAAGGCGGCGACGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //