Array 1 67219-65700 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMT02000052.1 Leptospira alexanderi serovar Manhao 3 str. L 60 ctg1134731470671, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================== ================== 67218 29 100.0 32 ............................. CAGAATCATGATTGCATTTGGGTTTTTTATTC 67157 29 96.6 31 ............................C CTACTCCCAACCCTTCAAAAGATGAAACAAA 67097 29 96.6 31 ............................T TGCAAAGGTTGTTGTCTATCCGGATCTTTCC 67037 29 96.6 31 ............................A AGCTCTCTCATTTACCGCTAATCCTAAAACG 66977 29 96.6 32 ............................A AAGGGTTTTCATAATTCTTGCTTCCGTTACCG 66916 29 96.6 33 ............................A GACATTGTCCACAATCTTCTTTAGAACGGCAAA 66854 29 96.6 32 ............................A TCACGTCTATTACTACAACGAATAGAACCGAC 66793 29 96.6 32 ............................A GACCGCTGCTTTAGACCACTCAGCCACTTCTC 66732 29 100.0 32 ............................. AAAATTTTTGAATCAATGCTTTCAAATGGCCA 66671 29 100.0 32 ............................. ACAAGCGCTTGGCCAAGTCCAGTCGCCGTGCA 66610 29 96.6 30 ............................T TCTTTTTTAGGAATTTACTGCGAAAATCCG 66551 29 100.0 31 ............................. GTTGCCACAGGCTCGAAGTAAAAAAAGAGAT 66491 29 100.0 31 ............................. CCCGCAAAACTAATTTCAGCGCAGTTTTAGA 66431 29 100.0 31 ............................. GAGAATAACTGGATGAATGAAATAGAATCGA 66371 29 100.0 39 ............................. AAAGAAGATTTTACGAGTGATCAAACGAACCCAATGGGA 66303 29 100.0 32 ............................. CGCCTTGGGACATTTTTCTTTTCGGCTCTTTA 66242 29 100.0 33 ............................. AAAATCTTGAATAGAATCTGTTGAAAATGTTCC 66180 29 100.0 32 ............................. TGACCGAATGTTTCCGTCCATAGGATCGGATG 66119 29 100.0 32 ............................. CGAACACGATCCTGGATGACCTTGTTGAGATT 66058 29 100.0 32 ............................. GAATTTCTTTTTCTGCCGGAGTTTTCTCAGGT 65997 29 100.0 32 ............................. TTGAGGAGAGGCTAGTAACGGCTTGAGAGAAT 65936 29 96.6 34 ............................A GGATTAGAAGCTGTATTTCGGGAAACTTTTCCCA 65873 29 100.0 32 ............................. TTTTCTTGGATTTGTGACGCTTGCGTAATGAT 65812 29 93.1 56 ..........................TG. AAAACAGAATGGATTTTGACTTAAAACCCTAACCACTAATTCCTAATAACTAACAT 65727 28 75.9 0 ...GAAA..-................TG. | ========== ====== ====== ====== ============================= ======================================================== ================== 25 29 97.5 33 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCTCGTTTGCTCCAATCTATTTATGACCTTCGCTTGGTATGGTCATTTGAAGTTTTTTCACGGATGGAATCTTCCTTTAACAATTTTACTCAGCTGGGGAATCGCACTTTTCGAATATGTCTTGATGGTTCCCGCCAATCGAATCGGCTACGGAGAGGAAGGTTACAGCGCCTTTCAACTTAAAATCCTACAAGAGATCATCACTATCTCCATTTTCATCTTATTTGCTTCCTTGATTTTAAAGGAAAAGATCAGATGGAATCATGTGGTGAGTTTCTTTTTAATTTTAGCGGCGGTTGGGTTTGCGTTCTACGATAAAACTCCCGCAGAAATATAATTCAGCGATTCACTAATTGGTTTTCTTTCAAAGTATGTCAAATTGAAAAAGGCTTGATCTCGGAATTCAGTCCGCCGATATCATCGGCAAGTTCTGCAAAATACAACCAATTGGGCAATTTTATCTTGTCGAAATTACAGAAACTACTAAACTAATCTTTAGC # Right flank : AAAACAGGATAGATTTTGACTTAAAACCCTAACCACTAATTCCTAATAACTAACATCTTGAAACCCACACGTGGGGTTGAATGGAAAACAGGATAGATTTTGACTTAAAACCCTAACCACTGACATCTAATATGCTTTTGTTTATAAGAATTTCCGAATCCCTTCCGCAAGAGTTTTTCCGTCCATCCCTCCGGGAAAGGTAGCAAGAATTCTACTTTGATCATCTAGGACATACAGAAAAATGGTATGGTCCACGGTATAACCGTCTTTCCATTGAGGAACGCTTACCTTTTTCGAAACCACGCCGAATTCATTCTGGAGTAAATCAAGCTTCGTTTTTTCTCCAGTCAAAGCGATCAATCTTTCACCCGGAAACCGTTTTACATATTTTGCAAGTAATTCGGGAGAATCCCTCTCCGGATCCACGCTGATAAATACGGGCGTCAGATTCTTTCCATCCTCGCCCAGTTCCTTAACCGCAGCGGACATATCTAGAATTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7778-6749 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMT02000065.1 Leptospira alexanderi serovar Manhao 3 str. L 60 ctg1134731470664, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 7777 29 100.0 32 ............................. AAAGGTATTACTCATACCATCCCCGTTTGGAG 7716 29 100.0 32 ............................. GGAAGTCGAACCAATTCACAACCTGTTTGATA 7655 29 100.0 32 ............................. TGCTGCCACAATTCTGTATACGGGTTCTCCCG 7594 29 96.6 33 ............................A GGAAACATTTCGGAAGAATATGATAGAATCGGA 7532 29 96.6 31 ............................A AAGCCGAGATCGGATTCTAACGATCCCCGAT 7472 29 100.0 32 ............................. GGCTACTATTTCCAAACGTAAACTAATCATTA 7411 29 100.0 32 ............................. ACGATTCACCAACTGACTGCAATCCATCTATC 7350 29 100.0 32 ............................. ATCACAGAACTTCCATAGCGTCATTCCGTTGA 7289 29 100.0 32 ............................. TGCTGCCACAATTCTGTATACGGGTTCTCCCG 7228 29 100.0 32 ............................. GCGACGTCAATCGCTTCGGAAAGAGAATAGTT 7167 29 100.0 32 ............................. AAGAGATTTTAAAAAGTCCGTTTCTCAATGTT 7106 29 100.0 32 ............................. GCCGACCAGGAGAAGTTGGAACTTGAATGGGA 7045 29 100.0 31 ............................. CCAGGAACTAAGCGGCCTTCCACAAGCCACA 6985 29 100.0 33 ............................. AATTTCCGGATCGCCAAAGTTCTTCAAGATTCC 6923 29 96.6 33 ............................A GGTGGATCACCTTCTTTTCCGCCCGTTCCTGGC 6861 29 93.1 55 ..........................TG. AAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTAACCACTAACA 6777 29 69.0 0 TCT.GAAA..................TG. | ========== ====== ====== ====== ============================= ======================================================= ================== 17 29 97.2 34 CTATTCTCCACATGCGTGGGGTTGAACCG # Left flank : TAAATTACTTAAGAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGGGTGAAGACCTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAACCGGGCGTTTTTGTCGCTTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCGAAACGCGATCAGAAAGAAGTTATGAGTATTTCCGATTTTTCTATGGTCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCAGACTCCCTTCTTTTAGAAGCAGATGATCCCTAATGAATCGAATGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : AAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTATCCCCTAACATCTTGAAACACACACGTGGATTAATAACTTTAACGATTGTGCAAGTAACTTCCCCGCAAAATCCGCTAAAAGATTATCAGCTGGAAAAAATCATAACGAAACGTATCGCAAAAGAACAAACCCATAAGACATACAAGAAATCTGAATCCGATTATAAAAATCATTTCCTTTCAGATTTCTTGAATCCTTTTAAACTTTGATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACCGACAAATGAAGAACCGCGTATAACAACGATGCGAGATACGGGTCTGCAATGAAAACAAGTTTAGAAAAAAACCAGGCTTTGACACCGACCGATTTTCCATTCTCTAACATGATTGTCCAAAGGTTGAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCTCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 11715-11321 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHMT02000009.1 Leptospira alexanderi serovar Manhao 3 str. L 60 ctg1134731470687, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11714 29 100.0 32 ............................. ACCAAATCGGAAAAATGGGAGCACTAAAGACG 11653 29 100.0 31 ............................. TTTTTATTGGTGTGATGAAGATGGGCGCTTG 11593 29 100.0 32 ............................. GGCACGCGCGCCAGGAAAGCCAGGAGTATCCG 11532 29 100.0 32 ............................. TAGGGCGGCCTAGGTAGTGGCGGCCGGTTAGT 11471 29 86.2 32 .......................A..TGA AAGTCCAACCGAAGACTTTCCTGCGGCCTCAC 11410 29 100.0 32 ............................. AAATTAGTTGACAGAGTTAAAGAGGGTCTTTC 11349 29 86.2 0 ............TG............TG. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : TCGTATGAAAACGGCGCATTTTATTCTATGTGCGACTTTCATTTCTGCTCAATGAACCTGACTCAGAAATTGCGATCGTCACACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATCGTTGTTTTTTTACAACATTCAATTCATATAATTCCGATATACATAATATTATGATAAACAATTTCTCTCTTTCTAAACAAGTTTGTTCCCAACTCTTTCAAAATGATCGGCCCTCTTTCTTTGGATCCGAAATTCGTTTTCATGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTTATGCCCAAGCTAAGTCCAAATCGAAATCAGAAAGAACTTTAAATGATTCCGGTCTTTCAAGGTTTCTTGAAGAGGACAGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAACACAAGATCAGATCATACCTTTAAAAATAAACTCTAAGCTGACATAATATGTAAAATACTATACGAACTTTTAGA # Right flank : AAAACAGAATGGATTTTGATTTAAAACCCTAACCACTGATTCCTAACCACTAACATCTTGAAACCCACACGTGGGGTTAAATGGAAAACAGAATGGATTTTGATTTAAAACCCTAACCACTAATTCCTAACCACTAACATCTTGAAACGCACACGTGGGGTTGAATGGAAAACAGAATGAATTTTGATTTAAAATCCTAACCACTATCCACTAAAACGTGGGAACTCACGTTAATGTATGGGTTCATTTACGCCGCCGAGCCTTTTTCTCTCGGCGGCCCAAAAATCACTTAAGTTTAATCGTAGATTTATAGGTCTGCGAATCTTTTATCTTTTTCTCACCGATCGTCCCGGTGATTTCCACAGTCTCTTCAATCGTGATGGTCACTTTATCAATATCGTCCATATTAGCAAAAGAATACTTTGCATTGTTCGATGTGAAAGTTAGATCGATTTTCGGATATACGAAGCCGTTTACAGTATAGGAATCTGTGCGCATCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //