Array 1 27-969 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGX01000113.1 Salmonella enterica strain 590 contig0000113_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 88 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 149 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 210 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 271 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 332 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 393 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 454 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 515 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 576 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 637 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 698 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 759 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 820 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 881 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 942 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAATTCTAAAACGGGACAAATGGAAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30410-29709 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGX01000066.1 Salmonella enterica strain 590 contig0000066_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30409 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 30348 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 30287 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 30226 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 30165 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 30104 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 30043 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 29982 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 29921 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 29860 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 29799 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 29738 29 93.1 0 A...........T................ | A [29711] ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 145-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGX01000071.1 Salmonella enterica strain 590 contig0000071_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 144 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 83 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 22 22 75.9 0 ......................------- | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : A # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 984-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPGX01000159.1 Salmonella enterica strain 590 contig0000159_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 983 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 922 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 861 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 800 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 739 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 678 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 617 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 556 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 495 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 434 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 373 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 312 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 251 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 190 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 129 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 68 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACATGCACCTTTTGAGCCAGTAATTGACAG # Right flank : GCCAATACGTATACTGACAACAGTATTACTGACGTGTTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //