Array 1 972320-969467 **** Predicted by CRISPRDetect 2.4 *** >NC_014961.1 Desulfurococcus mucosus DSM 2162, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 972319 25 100.0 41 ......................... AGACCCAAAATCCCACCACCGTCAATGGTCCTTCCCTTCCT 972253 25 100.0 41 ......................... ATGCCTAAACCGGTAAACCTGTGTCAAGCCCGCTAAGTCTT 972187 25 100.0 39 ......................... ATTCAATTATGGGCTTGGTTTTGGGTTTGGGCTGGTTCA 972123 25 100.0 39 ......................... TATCATATACGGTATAGGTATTAGTCACAGTTAGATAAG 972059 25 100.0 39 ......................... TCGTCAAGTTTCTCCTTAATGAGACGCAGCAGCTTCTTC 971995 25 100.0 40 ......................... ATACGGCTTCAACGTCATATTTAACGGGGGTAGGGCTGCT 971930 25 100.0 40 ......................... AGCCTAGTTCTACGACAAATTTGACGGCATTGAAGTAGAA 971865 25 100.0 42 ......................... AAAGCTCCTCCTCGTTGAGCCATTCCTGCTCGATTAATTCTT 971798 25 100.0 37 ......................... AGGTAGCCAGTGCTGTAGGGCTGCAGCTTAACGCCTT 971736 25 100.0 40 ......................... CTGGCCCCTTCGGCAGGCTACTCATGGGCATTATCAAGCT 971671 25 100.0 41 ......................... CTGGAGGAAATTCATTAATGTTTTGAAGGCCTCGTAGCTCG 971605 25 100.0 38 ......................... CCTAATTATCCCTTCCTTTTTCAACTGTGAAAGGTACA 971542 25 100.0 38 ......................... GCCCGGTTCGAGCTGACTAATGTAACCATCGCTCCTAG 971479 25 100.0 39 ......................... ATCTAGCGGTGCTGGCGGGCAGATCCCGCGGGGCCGGCG 971415 25 100.0 40 ......................... GGCGGAACACATAGTTAGGTATAACGGGCGTATCGCTTAA 971350 25 100.0 38 ......................... ATTGTGGTAGTAGTCGTATCAGTGGCTGTTTGAGCTAG 971287 25 100.0 38 ......................... ATAGCCTGCCGAAGGGCCCAGAGAATATATCACCCCAC 971224 25 100.0 39 ......................... CTCGTCCGTGCTACCACCATATAGGGTTTTACGGCTTCA 971160 25 100.0 38 ......................... TCGGCCAAGGATTAAATCATCGGTGAGATACCTCTTCA 971097 25 100.0 38 ......................... TAGCCTGTAGAATATGTAGCTTAGGGCCGTGCCTAACA 971034 25 100.0 38 ......................... TGTAGGCTTCAACCGAGACAGCCGGCTCACCATCCTCC 970971 25 100.0 39 ......................... TTATACTGATGATATACCGGGCGTTCCTAGCACTGGTCG 970907 25 100.0 38 ......................... TGCAGGTGTGTCGATACTGGCACCGCTTTTATCATAGG 970844 25 100.0 40 ......................... TTAACTCGATCTCCAGCTCCGAGAACTGCAGCTCGCGCAA 970779 25 100.0 40 ......................... CCGAACCTGAACGAGACCGCGGCTACATACCACTTCCCCG 970714 25 100.0 39 ......................... TCCTTCTTTATCCCCAGCTTCCGCTCCGCCTCCTCTAGT 970650 25 100.0 40 ......................... TGAAGCTGATAATAAAGGCTGCGAAGGGCGATAAGGAGGC 970585 25 100.0 40 ......................... GCGTGAAGGAGGGAGGCAAAGATGCTTGACATGGCCTACG 970520 25 100.0 40 ......................... TTAACTCGATCTCGAGGTCGGTGAACTGGAGCTCGCGCAA 970455 25 100.0 39 ......................... ATTAGCCCTTGTCTTAATTGCTCCTTCAGGTCATCCAGC 970391 25 100.0 37 ......................... ACTGCCTCCGTCGCCAGTGTAGTCACTGCGGCCGATA 970329 25 100.0 40 ......................... CACGCTGCTTGACGCTTACGTAGCGTTGAAGGCCTTCGGC 970264 25 100.0 40 ......................... CTGGTTACGGGTAGTGCGTTGGCGCTGAACACCATTTTAG 970199 25 100.0 39 ......................... AGCGAATACCTTTTCACGGTTTCATCGCTATGGGATTAC 970135 25 100.0 39 ......................... TTGTAATACGCTTGGAGATGAATGCTCTGGAATCCGTAG 970071 25 100.0 40 ......................... CAAACACCTTGCGGTCAACCATTATTACACCTATGCCGAA 970006 25 100.0 41 ......................... AGCATTGACGCTACTACTAGTAGAAAGGGGCTATACATTGA 969940 25 100.0 39 ......................... GCGTAATGAATTACCCTGACCATTTACTACACTCCGCTG 969876 25 100.0 40 ......................... ATATAACGGGGGAATTCGAGTATCTCATCGATGTCCTAAA 969811 25 100.0 39 ......................... AGTATCTCATCGATGTCCTAAATGTGAATGGGAGAACCA 969747 25 100.0 36 ......................... ACCATTGTTACACCGATGCCAAAGGCGTCCACTGGA 969686 25 100.0 40 ......................... TATTCGACCACGAGGTCAATGGGGCCCGCGTTGAGCACCT 969621 25 100.0 41 ......................... ATGTTCACGATAATATGAATAGGCGTTTATCAACTCGTTCA 969555 25 92.0 39 ........A..............G. TAGTTAAATACGCTCTAGCCTAGTTTTTTAAATAGTTTT 969491 25 96.0 0 ..............G.......... | ========== ====== ====== ====== ========================= ========================================== ================== 45 25 99.7 39 GCCTCAATGTAAAGAGGATTGAAAG # Left flank : ATTCCTAAATGTGCCGCCCGCCCTGGCTGGAATAAGCCTAGCTAACGGAGTACCTGTGTAACTAGTTACCAGTAAGCCGACACCGCTATAAGCCATAGCCTTAAGAAGCTCCGAGGATATGGATGCCCTCCCAGCCACGACAACATCCCTAATCAGCTTCAACGCATACTCCTCCCTAGAACCTCCCACCCTAACAACCACCCTGCCATGCTTCTTCCCGAGAAAAGCACCATACTCGTCAACGAGCAGGTAACCGTTGACCAGGCGGGGCAATCCAACCACTCCTAGGATCTACTTAGAGCACACCGCAATAAAAACCCAATGCCCCCCGCTGGTTTTTGGTCGAAGTGATCGCTTTATACAAACAGGTTGATCACCCGGTTCTAGATCCCTCCCGTTGATACTGGTCGAAGCCGCTCTGCACACTCTTTCCAGTTAAAACCGTAAGATATTTAAGCTGCGACCCGGAAAGCATAATATGTAGAAGAGCTTCGACAAGT # Right flank : GGTTTCGGAACAGCTGCCTCTAAACAAGATGTTGGATGAGTTGGAAATACGTGAATACGCTGTGGTAAAGGCATAAATACCTGGTTTGTCTTTTTTATGGGTGGGGCATGTGAATATTATGAGGCTGGTGGCTCCTCTATTAGTAGTAGCCATCCTGGTATCGGGGCTGGTGGTCCTAGATTATACTGTACCCGCGGATATTAAGAGGGATGAGCATAGGGGTTTAACTACCAGGTATTATAGGGATTATTTTGAGCCAGCTATAAGAATACGTGTACCGGGCACGTCGTCAAGGGCTATCACCATATCCAGGGTTTACTTCTGGGCTCTTAACGGTAGCCTGATAGATCTCGGTAGGTATAGAAGTGTAGGCGGCGTCATAAAGATACCCAAGGGTAAGATTGTCGAGGTGTATGGGGAAGTAGCTGAATACGTGAAGAGAGAAGGGTTAGACCCTGATAGCGTCGGATTAGGATTAGTAATACTGAACTCTATACACA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGTAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 1000324-1003300 **** Predicted by CRISPRDetect 2.4 *** >NC_014961.1 Desulfurococcus mucosus DSM 2162, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 1000324 25 100.0 40 ......................... AGTCTACCGAGGAACAATATGACACGGTTTATCGCATTAA 1000389 25 100.0 39 ......................... TAAGAATAACTACTACGTGTCCCGTCGGGCATACGAGTA 1000453 25 100.0 38 ......................... GAAGGCTATTAGCGATATGAACACGGCTAGATGTATTA 1000516 25 100.0 40 ......................... TAGTAACCACCGGGTGTATTGCTAACCAGCGAATTAAAGT 1000581 25 100.0 39 ......................... ATGGTGTACACGGTTTTATAGTCTAGTGCACTGAGGTCG 1000645 25 100.0 37 ......................... ACTCAGTGTTGCTCGGTGGCTTCTACTATAATGGGAA 1000707 25 100.0 39 ......................... ATTATGCAAAAGAAACCCCCTAGGCTTCTACCCTTCTAC 1000771 25 100.0 39 ......................... CTAGCACCTGGCGAGACTAAGACTATAACGCTACCATTC 1000835 25 100.0 41 ......................... CACGGTGAAGAAGAAGCCGCCGGGCAACGTCATCTGCTTAA 1000901 25 100.0 40 ......................... ATAGGCTCCTCCTGAGGCTCCTTCATGATGCGTAGGGGAG 1000966 25 100.0 41 ......................... ACTATTCTCGACAGGTCAAGGGTAAACTCCTTTCCACTCAT 1001032 25 100.0 40 ......................... TCTCCGCCACCGCGCTGAAAGCACCGTCAAAGGCTACAAG 1001097 25 100.0 38 ......................... ATGACGCCAAGTTAGTTAAATCAGCAGTTGTAATCTCG 1001160 25 100.0 39 ......................... TAATACCCGAGGAGGCAAGGGAATACAGGGATATGTGTA 1001224 25 100.0 40 ......................... GCCATTAACCTCTACTGCTGTCAATACCACTTCCTCATAA 1001289 25 100.0 41 ......................... ATTGTTGAATGGGTCATATACACTTTGCCGTCTAGTAACAC 1001355 25 100.0 40 ......................... ATGACCCAATCACACTCAACATCATTGAGGCACTCTTCCT 1001420 25 100.0 38 ......................... ATACTCCTCGTGCTCCTTCTCGTATTTCTTGTGCTCCT 1001483 25 100.0 39 ......................... CTTATTGTCCTTCAGCCACCTATACACTATTTCAACGCC 1001547 25 100.0 39 ......................... TTTGGCTGGCGGTTCTGATACTCAGTCCATGATAAATCC 1001611 25 100.0 38 ......................... ACATCACCACTAGTGGGGTATGTTGTGCTTCCCATTTT 1001674 25 100.0 38 ......................... ACTCCCTGAGGGAGTCCCAGTTTATCCCCGGGGTTTCA 1001737 25 100.0 39 ......................... AGCGAATACCCGGTGATCACGCCGGCGAACATGCTTGCA 1001801 25 100.0 39 ......................... TAGAGGTGGTTGGGTATGAGCTACATGGTTGAAGTATGG 1001865 25 100.0 40 ......................... CTGGGATTGATGTTGAAGTTGAGGCTTGCGAGGAGGCTGG 1001930 25 100.0 39 ......................... TCAGAGCCCTCGGGGGCAAAGCCCTCGGGGGCTCGACCT 1001994 25 100.0 39 ......................... CTCCATTCCCTTATACACTCCCACTCGATGTCATCATAG 1002058 25 100.0 38 ......................... ATTAGATCATATAATATTAGGTAAACCTAGCGTTTTAA 1002121 25 100.0 40 ......................... TCATCACCTTGGTGAGTAATCTGAGTAACATCCCCGATGT 1002186 25 100.0 38 ......................... CCTCACTCCCCTTCACCTCCCAGCGCGAGATACGCTAG 1002249 25 100.0 39 ......................... ACTCATCTTCCGTGGGAGGCGAGCCCCTAATGCCATAGG 1002313 25 100.0 36 ......................... CGCATGCCGTTAATGTAGTCATCCTCAAGGGCCCGG 1002374 25 100.0 41 ......................... AGCAAGTAAATAACGACGCTGCGGTGATAACCAATGCCAAC 1002440 25 100.0 40 ......................... GGGTCGGCCAGTATAATGTACTCCACGTCCCGCGGCATAG 1002505 25 100.0 39 ......................... GGGAGCTCCGTGCGGAGCGAGTACTTCACAGCGTACTCC 1002569 25 100.0 39 ......................... TTAACGTCAAGTGCATATACATAATTATCGTCATTTTCA 1002633 25 100.0 38 ......................... GTAAACACCACTTTCCTGGATCTGCTGAAGAACGGCAC 1002696 25 100.0 39 ......................... CATTTACGCTTACAATGCTATCCCTGAAGGTTACATTAA 1002760 25 100.0 39 ......................... TATTCGCTATGGCTGGAGGCATAGGTCTAGGTCTATTCC 1002824 25 100.0 40 ......................... GATTAGTGTAGTTGCCCATGAGGTCAGCACCGGGGATTGC 1002889 25 100.0 39 ......................... TATAATCCGCCAACCGATATGGAACGGGCTCCAGATACA 1002953 25 100.0 41 ......................... ACCTGAGATGTTAACGGGACGAGGCTTATAACCACGGCTAA 1003019 25 100.0 40 ......................... TTGCACCTCTGTAGGGTTTCCCGTGCCTCGGCGAGGATTG 1003084 25 100.0 39 ......................... TAGAGAGGTTTATGGTCTCAATTAGTCAAAAAGTCGAGA 1003148 25 100.0 40 ......................... GCATATATCTCAGAGAAGAAGCCCAAGTCCGATACACTTG 1003213 25 100.0 38 ......................... CCCTTCTTCTCCACTAGTATTAGGTAGCCGTGCTTGTA 1003276 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 47 25 100.0 39 ACCTCAATGTAAAGAGGATTGAAAG # Left flank : AAGCCTCGACGCAGCCCGGGCAAGCCCCACAGCCCTCTCAACAGCCCTCCTCACACCATCCCTACTCAACTCAGGCGTCGCAGCAAAGCCAAGCGCACCATTCACCAAGACCCTCACACCTATACCGCTACGGCTGACAACGCCTGAACCAACCACACCGCCATTCCTCGTATAGATATTCAGCCCGCTGACACCGTGGAACCTGGCCTCACCATAAGACGCACCGAGCTCGCCCGCCAACCTCACAGCATACTCAACCAGATCCAGCACCACCAACCACCCACACATAGATTAAAACACCCGAAGCAATAAAAACCCAATGCCCCTCGCTGGTTTCTGGTCGAAGTGATCGCTTTATACAAACAGGTTGATCACCCGACTCTAGATCCCCCTCGTTGATACTGGTCGAAGTTGCTCCGCATACTCTTTCCAGTTAAAACCGTAAGATATTTAAGGCTGCGACCCAGGAAACATAACATGTAGAAGAACTTCGACAAATA # Right flank : GCTTGTAGGAATGTTGCTTGATGCGGGCCCGCCGGGATTTGAACCCGGGGCATCCGGCTCCGAAGGCCGGCGCCCTTTCCTGGCTGGGCGACGGGCCCTGTTTCATGGTCTTGTTATTTCTTCTTGGATGCTATATATCCTTGTCTAGCTGTGTTCTTTGAGTATTTGTCTGCTAGGTGTAGTGGTAGTGGTAGTTTGAGCCCTGGTTTCATGAGGTGTTTGACTACTGTGACGGCGTCTTCGAGCCTGATTAGGTAGCCTATGCTGACGTATAGCTTGACTCCTTTCACTGGTTCCAGTATTTCGCCGGCTGTTACTCCGTGTGCTGTGATGAGTCTCCTGCCGTTCACGGTTTTCTCCTCGCCGTAGAGGGGGTTCTTGGCGACGCCTATGGTGGGTTTCCCGAGGACTAGCCCTATGTGGGTTGCTATGCCGAGTGCCCTGGGGTGGGTTAACCCGTGTCCGTCGACGAGTATTATGTCGGGGTTTTCCGGCAGCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAATGTAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 3 1028458-1032539 **** Predicted by CRISPRDetect 2.4 *** >NC_014961.1 Desulfurococcus mucosus DSM 2162, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 1028458 25 100.0 41 ......................... ATCCGGGCCGAAGTAATCGACATATTGGCCCGTAAAATGGG 1028524 25 100.0 40 ......................... GTTCACATTTGCGAACACTATTCATACCCATAGACAATGT 1028589 25 100.0 40 ......................... ACCTCTATCCTTATCCACTTTTCATAAATGGGCCGGTTTC 1028654 25 100.0 40 ......................... TCGCACTGATTATCGAGGAGGGCTTACTCCTATGGTTCAA 1028719 25 100.0 40 ......................... ATATCCCCGGCGGTCGCCCCACGGTATATGAAGCCCTCGG 1028784 25 100.0 38 ......................... TCCCAGCTGGAGTAGTCATCCAGATGCGGTTTAACCAT 1028847 25 100.0 40 ......................... TTATAGCTAACGCAATACGCTCGCGTCTTTCTTCCACTAG 1028912 25 100.0 36 ......................... CGAATTAAGACGCCTAACCCTCCCCAGAGCCTGAGG 1028973 25 100.0 39 ......................... CCAACGAGCTAGGCTGGTACGGCATCCATTACAGGGAGA 1029037 25 100.0 40 ......................... CTCTAAGTATGACCTCCTCGGTAGCCCTCTCAATACATGG 1029102 25 100.0 38 ......................... GTGTAATGCACCATTAAAGCCTGCGTGGTCTTTATGAT 1029165 25 100.0 37 ......................... ACCCAATTGAGGTTTTCACCGCTCACATATCCCTGAA 1029227 25 100.0 40 ......................... CTCGGGTTAGTGTAATTGATGCTGGTTACCTGCTGCAGCG 1029292 25 100.0 41 ......................... AGAGGATCCCGAGCTACCTGAAGGCGAGAAGATAATCCTAG 1029358 25 100.0 39 ......................... TTTCTTCAGCTCAAAGCCTATATCGTGGTCTAGCACATA 1029422 25 100.0 40 ......................... ATACTATCGCATTACTCCAGAAGCTATTTGACACGACTGG 1029487 25 100.0 39 ......................... CTATTGCTACTCCACACGCCTCCCCGCTAGTGAACCACG 1029551 25 100.0 38 ......................... TAAATTGTTTAAAATGATTATCACTCAACCTCATGGAC 1029614 25 100.0 38 ......................... GTGGGTACGTATATGGTGCTACCATTAGTAAGGTATAT 1029677 25 100.0 38 ......................... TTGCACAGGCGTTTTCCTGCTGCTGTTCTAGTTATGGC 1029740 25 100.0 40 ......................... ATTTTCTGCCTTATCTAGGCTGGCCCGGCTCATTAAACCA 1029805 25 100.0 41 ......................... CTGAGGAGATCCCCGCAGAGTCGTGAGTCAAGGGCTTTTAT 1029871 25 100.0 41 ......................... TTCAGCTGCTGATCAATTCTGCCCGCCCACTTCAATATTGG 1029937 25 100.0 39 ......................... ATATTGGCGCCAGACTTATTATATTGAACCTCGTTTAAA 1030001 25 100.0 40 ......................... GCTCTAACAAGTTGAGCCGGCTGATAGCCTTGCGGTAGCT 1030066 25 100.0 39 ......................... ATGGATGACTGCTACTGGCAGTACGGCGACTATAGTAGG 1030130 25 100.0 39 ......................... TATAATTATATCGGGAGTGGTTTCGGGTATATATTTTAA 1030194 25 100.0 39 ......................... CTAGATCCCTGATCCTTATAGGATCCTAGACTCGTTAAG 1030258 25 100.0 43 ......................... TAGCTATGTCTTGCAGGGCTTTCTCCGCCTTGCTTAAGCCTAT 1030326 25 100.0 38 ......................... AAAATGTCGGGCGGGGTATTTAAGCGTTGTGTTTTGTA 1030389 25 100.0 39 ......................... TTACGATCACCTTGCTTTTCTACTAGTATGAGGTACCCG 1030453 25 100.0 39 ......................... TGCTACCCTTTATCAGCAACGCTAGCTCACGGGCCCACA 1030517 25 100.0 40 ......................... ACGAGCTGGAAGTATACCGTGGTATACCAGGCTCCCGTGA 1030582 25 100.0 39 ......................... TGGAGACCGTTACCAAGATCAATAGTAGAACTGAGATAG 1030646 25 100.0 39 ......................... GTAACTTATTTTCATTTTCCAGAAGTGGTATTCTACCAT 1030710 25 100.0 39 ......................... TATGGGGTTACAAAAGCTATATGGGATTAAACTGCTGGA 1030774 25 100.0 40 ......................... TGTAGTCAACCCTTGCAACAGGCACAGCCGTGTACACGGT 1030839 25 100.0 39 ......................... CTACCATAGGGGTAGCTTATAAACAGCTGTGTAGTGTAC 1030903 25 100.0 38 ......................... CCAGCTTTTACATATATTTTAAGGTAATGGTATCCGTC 1030966 25 100.0 36 ......................... AAAACATACATATATAGTCAGCAGGCGATATATATA 1031027 25 100.0 38 ......................... ATACTCTCCCTCACAACCGGGACGGGATCCACCATGCA 1031090 25 100.0 41 ......................... ACGTAGGAAGGTATTCCAGGATTCCTTTCCCTTATATCTTT 1031156 25 100.0 40 ......................... TTAAATTTAAAGGCCTCCAACACTACCGCGTCGCCCGCCA 1031221 25 100.0 42 ......................... GTCAGCAACGAGGAGCTTCTGCAGCTACTACGCAACTACGAG 1031288 25 100.0 39 ......................... TTACTGCCGCCACCTTCTTGCCGTCATACTGCAGTGTGA 1031352 25 100.0 36 ......................... ATAAGCCTAGTGAGAGAAGCTTCTTCTCACGCTCAT 1031413 25 100.0 39 ......................... CCGTCCTGCTTACACCCGGCTTTGCAGGCCTCCCATATT 1031477 25 100.0 40 ......................... CTCACGAATGCCACCGGGTTCAACCCGGCCACAGTGCTGG 1031542 25 100.0 40 ......................... CCACAGTTATAAAGTGGGGCCTGGTGGCCCCGTTCGGCTA 1031607 25 100.0 41 ......................... ATATATCCACTCCACTGATTTCACCAAGGGCTCAGGGCTCC 1031673 25 100.0 38 ......................... AGAACACGGGAAGCGATGGATGGGTTAGGGTAAGGGTT 1031736 25 100.0 40 ......................... ACGGGTTCCTCCCCTGGCGGCGCCAGCTTAATCCACTCAG 1031801 25 100.0 41 ......................... TGTAAAAGTGCTAAAAGCTAAGTACAACAACTGTAAGGTAA 1031867 25 100.0 40 ......................... ATAAAATAAGGCGCGCTAGGGGGCTGGCCGGGGGGCGGAG 1031932 25 100.0 38 ......................... ATTGGGACAGATTTCAAGCCCTATGGTGCCCTCCAAAT 1031995 25 100.0 37 ......................... CTTCACCGGTGGTGAGGTCAACTATATATGGGCTCGG 1032057 25 100.0 41 ......................... ATTAGGTAGGATCCACGGCATCCTACCTAGTAGGGACCCCG 1032123 25 100.0 39 ......................... CTGTAACCGTGGTTGAAACATTACCGGCAAGGAGGGTAG 1032187 25 100.0 42 ......................... GTTTCATATGTCTCCCCTCAATTCTCTAATATGCATTTAGAG 1032254 25 100.0 40 ......................... AGTCTTTTACCGGGTTCAACTTGTTTCATTAATTCACGCA 1032319 25 100.0 40 ......................... ACGGCAGCCTCCCGTAGAAAAAGCTGCAGTCTCCCCGTGG 1032384 25 100.0 41 ......................... TAAAGTAATCCAATACCTCCCGGGGATCTCCCTCTGTGGTG 1032450 25 100.0 40 ......................... ATTGTCATAGGTAATAGAACTTGAGTGATTATCGGGATGC 1032515 25 96.0 0 ..............G.......... | ========== ====== ====== ====== ========================= =========================================== ================== 64 25 99.9 39 GCCTCAATGTAAAGAGGATTGAAAG # Left flank : CCTCAGGATTCGAGCCAGGCAGAATAATACACGTAGGGGACAACACACTAGAGGATGTTGGAGGAGCCCTTTCCTCAGGGTTCATCGGCGTATTGATAAACAGGAGAACCCGTAGAAACATGTATATCGAGGAACTGAAGGCAGCAGTAATCAACGACATGAGAGAACTACCAAAACTCTACCACGAGATATCACGCACAACATGCACATGAAACACAACGATACAGCCAATCCCGACACCACACCCTAAATCAACCAGTCCTCAAGCCTCCAAAGCAGTACAACACGCAAACCCCGTACCCCCGTCGCGGGAAACCCTGAACACCCCTCGTTGTTTTTGGTCGAAGTGATCGCTTTATACAAACAGGTTGATCACCCGATTCTGGATCCCTCCCGTTGATACTGGTCGAAGTTGCTCCGCATACTCTTTCCAGTTAAAACCGTAAGATATTTAAGGCTGCGACCCAGGAAACATAACATGTAGAAGAACTTCGACAAAT # Right flank : GGGTTTCGGAACAGCTGCCTCTAAACAAGATGTTGGATGAGTTGGAAATACGTGAATACGCTGTGGTAAAGGCATAAATACCTGGTTTGTCTTTTTATGGGTGGGGCATGTGAATATTATGAGGCTGGTGGCTCCTCTATTAGTAGTAGCCATCCTGGTATCGGGGCTGGTGGTCCTAGATTATACTGTACCCGCGGATATTAAGAGGGATGAGCATAGGGGTTTAACTACCAGGTATTATAGGGATTATTTTGAGCCAGCTATAAGAATACGTGTACCGGGCACGTCGTCAAGGGCTATCACCATATCCAGGGTTTACTTCTGGGCTCTTAACGGTAGCCTGATAGATCTCGGTAGGTATAGAAGTGTAGGCGGCGTCATAAAGATACCCAAGGGTAAGATTGTCGAGGTGTATGGGGAAGTAGCTGAATACGTGAAGAGAGAAGGGTTAGACCCTGATAGCGTCGGATTAGGATTAGTAATACTGAACTCTATACACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGTAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //