Array 1 2108477-2109015 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022575.1 Mycobacterium shinjukuense strain JCM 14233 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2108477 36 97.2 35 ...........................A........ AAGCGAACTCGCCGCCGCGGCAATGGATTCGGAGA 2108548 36 97.2 36 ...........................A........ CTGCCATACGCGGCGGACCCTTGCTAGGTAGTAGCT 2108620 36 100.0 36 .................................... CGGAAGATTGCGCGCACCACCGGGCGTGGCAGCAGC 2108692 36 100.0 38 .................................... ACCCGGCGTTGAGCACCCTAAATGGGTGACTGTTCCAG 2108766 36 100.0 35 .................................... CGGTTGAGCCGTTGCGGCGGTCGCCGTATCAGTCG 2108837 36 100.0 36 .................................... TCCCTCGATCGCCACTGACCGCAGGGTTTCCCGCTG 2108909 36 100.0 35 .................................... TGGGCGAGTCGTATGCAATGGTTGTGCCTGGCCGC 2108980 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 99.3 36 GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC # Left flank : GACGTTGCCAAGTGCGGCCCAGAAGGACGTGTCGGCGAAGATCATTCGCGCTTTCCGTAAACCACATCGTCAACGGACGCGGACAAGTCGGCTCCCCCGTCGAACGATCCGACGAAGGCATCGACCGGATCTGGGCCCGGCTGCCGGAGGTGTTCAGCGACGTACTCCCGGATGAGCGCGGCCTTCGACGTCCGCCGCCGTCGTGCTTCAACGGCAAGCGCTCGGTCGACGTCCTCGTCGATGTAGATCTGCAGCCTTTTCACGCCGGCAAATATACGCCATCAAATATACGATGTATACATCGTGCTTGCGGACCCGGGTGCTTGCCACTAGCTGCCGAGTTCGTTGAAGACGCCGCAATGGAGCCCAGGCCTATTCGCCCGGGAGACGGGTGATGGCGCCACGTCAGCTGTAGACGCCGGGCTGCCGCAATGGTGTGTAAGAAACCCGGGATGGTTCAGCCGCATGTCACGTGCTTTGCGAGGGCCGAGCTTGTGGGA # Right flank : CCGGCCAACATGCGGGCAGCATGCAGTGCATGCAAGCCTCGATGAAGTTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGGCGATGAGAACGTGTGGGCATGAAATGACCCCGCCGGGAGGTGTCCGGCGGGGTCGGTGGTGGCTAGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCTGTGCGGGTGGAGGATTCATCCACGATGGCCTTATCGGCGGCGAACGCGGCAACGAGGGCTTGTAGTGCGAGGTTGTTGACCGCGCGTGGATAGCCTCGGCTTGTCTGATGCACGAGGGTGACCGCGTCGTCGGAGAACAGCGTGTCGTCACGCCCGGCCAGGGCCAGGTGGTGGCGCAGGTAGCTTGCGGTCTCCTTGTCGGTCATGGGCGGCATTGCGTAGCGCAGGCCGATGCGCTGGTCGAGCGCGGCGAGCACGCCAAGTTTCATCCGGCGCCGTAGCGTGGGCTGGCCGATGAGCAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC # Alternate repeat : GCCTCGATGAAGTGCGGCCGCCGAAACAGCCGCCGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 2112272-2117449 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022575.1 Mycobacterium shinjukuense strain JCM 14233 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2112272 36 97.2 36 ...C................................ ATCGCAGCAGGTTTCCGATGAGTGATGTTTTGCCGG C,AAC [2112273,2112279] 2112348 36 100.0 36 .................................... GAGCGCCGGCCGACAGGTCACCCGACAGGGTGATGT 2112420 36 100.0 37 .................................... TGGACACTGTCATTGGCGATGTCGAAAGCGAACTCAT 2112493 36 100.0 36 .................................... TTCACCACTGGCGATGCTGTAGTCGCGGCTGCCCCT 2112565 36 100.0 36 .................................... CACAGGGTTGGGGTTGCCGCCGCGCCCGTACAGCCC 2112637 36 100.0 40 .................................... CTTCTGACCTCCTGTGTGAGATGACTACGTGTCATCAATG 2112713 36 100.0 35 .................................... CTGGCCGGCCACACACGCAGCAGATGCCCTGCAGT 2112784 36 100.0 35 .................................... CACTCCGCCTTGGCCGCCCGCGTCAACGAGGTTGA 2112855 36 100.0 38 .................................... AGGCGAATCCGGATGGTTTGCACACCATTTGGCACGGT 2112929 36 100.0 36 .................................... CTACACTATGCCCTGCCCTGACTGCGGTGCCCGCGT 2113001 36 100.0 38 .................................... CTGCGGCACCTCGTCGGCGAACCTGCTGATCGTGTCAA 2113075 36 100.0 36 .................................... CGCAAACCCCATCTGGTGCAGACTGCCACCAGTGGC 2113147 36 100.0 35 .................................... GTGCCCACTCGTTCGTCGTTTAGTGCCAGCAACAC 2113218 36 100.0 37 .................................... GCGAGACCGGCGATACGAGTGCGCGTCCACTGAGCGC 2113291 36 100.0 37 .................................... CGCCACCACGCCACTACGACTGCGCCGATACATCGGC 2113364 36 100.0 36 .................................... CGCTGACGTTTCAATGGGGGGTTGACACACCCTAAT 2113436 36 100.0 36 .................................... CTGACCTGCGGCCTGTGGCTGCCGGTGTGGCTGATC 2113508 36 100.0 36 .................................... ATTATCTGGCGCCAACACCGTCTCCGCCGATGACAA 2113580 36 100.0 35 .................................... TACACCTTGGGCAAGTTCACCGCCCCCCAAGAGCA 2113651 36 100.0 35 .................................... ACGGTGCCGACCCTTGCGTCCCACGCGGGATGGGT 2113722 36 100.0 35 .................................... TCGACATCGACCCACCCGAAGGGATGCGATCACTG 2113793 36 100.0 35 .................................... AGGTTACATCCGCGATGTACTCAGCGTGCGGGATT 2113864 36 100.0 36 .................................... ACGTCGTTTTGGGTTGAGGTGCAGCCGTTGATGCCG 2113936 36 100.0 35 .................................... TATCATACATTCGCTGAAACTCGTGGAGCCTGCGC 2114007 36 100.0 37 .................................... CCGGTGGTGCCGCGACGTTTAGCGATCACAATTCCAA 2114080 36 100.0 37 .................................... TTGTATTGTGCCGCCAGTATCGCTCTTCCCCCTAGTG 2114153 36 100.0 37 .................................... CGGTGAATCCGCCGCATGTGTGACGCGGCGCAATCCA 2114226 36 100.0 35 .................................... CGTCTGTTTCGCTCGCTGCTGATGAAACTTACGAA 2114297 36 100.0 38 .................................... CTGCAGTCGTAAAGGTCGGGGCCGACACCGCCAAAGCC 2114371 36 100.0 34 .................................... TCGCCGGCTTTAGTGAGGGCTTGGCCGCTGCGAC 2114441 36 100.0 36 .................................... AGCATTAGGCGACCCCGACCTGCTGCGGGTCATCGC 2114513 36 100.0 40 .................................... TGTCGGCCATCTTGGAGCCCCCTGGACCGCATCTGCGCAA 2114589 36 100.0 36 .................................... GGTGGGCCGCGACGTCATCAAATGCGCGTCGTGCGG 2114661 36 100.0 37 .................................... GTTCGCTTTGGTGCGCGGATAAGCGTTGGGGCACGGT 2114734 36 100.0 37 .................................... GGGGACCCCCCAACCGGCGCAGTGCTCGATGCGGCCA 2114807 36 100.0 40 .................................... CTCGCAGCGAGGCACCCCTAAGCGCGTAGCCGAGCGCCAG 2114883 36 100.0 39 .................................... TTGAACCGCTGCTGCTGCTCCGGCGAAAGAAGTTGAGGG 2114958 36 100.0 37 .................................... GTTTGACAACTGGCTGATGGGGCCGGTACGGGATGCG 2115031 36 100.0 37 .................................... GTGAGTCTGCGGGCTTTTTCCGACCACTTGTGCGGGA 2115104 36 100.0 36 .................................... TGTGACGAATCCGCCGCCCCGTCGACCACCGCTCGA 2115176 36 100.0 36 .................................... CCATAATTGGGTGGAAAAGGGGACGCGATAACCGCA 2115248 36 100.0 35 .................................... GCGATCCCCTGGTATCCGTGCTCGGGATGCCCCAG 2115319 36 100.0 39 .................................... GGGCGAACCACGGAGGCGGCGCCTGCTAGTTTCACTGGC 2115394 36 100.0 36 .................................... CGCCGGGCAGCCGTATCGCCCGTAGCTGTCCGCGCT 2115466 36 100.0 37 .................................... ATGGCCTGCAGTACGCTAAGGAGCAGGGCTTTATCAC 2115539 36 100.0 37 .................................... ACGTGGTGGCGAAAGTTGCGCGCAGCCAAGTTATTTG 2115612 36 100.0 36 .................................... TAAATGCCGGCCAGGAGTGTACTGCTCGTCCAGCCC 2115684 36 100.0 35 .................................... CTGGTGCACCAGTCCGTCTGCTCGAAGTAGGCAGG 2115755 36 100.0 36 .................................... TCGGCCGGGTTGGCGATATCGGAGCCGGTGCTGCTA 2115827 36 100.0 38 .................................... CGCTTGTAGAACAAGCATGTAATTGTGGAATGCAACCC 2115901 36 100.0 38 .................................... CGGCCCTCGTAGGCGGCCCCGCTAGCAATCTCCTCGGT 2115975 36 100.0 39 .................................... CCGCACGTCGGCGCCTTCTGCTCGGCGCGCAAATAAATT 2116050 36 100.0 37 .................................... TCGTCTGCAGATCAGCTCGCGCACGGTCCAGCGCTGG 2116123 36 100.0 37 .................................... GTGGCGGACATCATCGACATCATGGCAAGTCCAGCAA 2116196 36 100.0 36 .................................... AAGTCCTCGACGCGTTCGCCATCACCGCGTCACCCA 2116268 36 100.0 35 .................................... GCGGCCCGGGGTTGATGATGTGATGCGAATGTTGC 2116339 36 100.0 33 .................................... CGGGGTCGCACCGTTGTCCATGAACCGCTGCTT 2116408 36 100.0 35 .................................... GCGTACATGGCGAGCTGCGCGCCGGTGGAATGCGG 2116479 36 100.0 36 .................................... CGACTGCACTGCGAAACCGGGCCGGCCGTCGCATGG 2116551 36 100.0 34 .................................... ATGCGACCGACATTTCCGGCACTGTCACCGACGA 2116621 36 100.0 40 .................................... TCGTGTCGGCGTCGGGTGTCATCGTCGGCAGTTGCGGGCC 2116697 36 100.0 33 .................................... CATCCGTCGGCCGGGGGGAATGGTTCGGCGCTC 2116766 36 100.0 37 .................................... CACTACTTCGCCGACCTCTTTCCGCGGGTGTCGTTAA 2116839 36 100.0 37 .................................... CTGCTTCCGCGGCATTTCCGCCCACACGGTGGTGATG 2116912 36 100.0 36 .................................... CGTTACATGCTTCATCATCGATCACGCCTTTCCCAT 2116984 36 100.0 36 .................................... CGTACACGTTCACGGTGCGCGGCGGAGCGGCTGGAA 2117056 36 100.0 37 .................................... CTGGCGCTAACTTGGCTGGCGCTAGCCTGGTCAGTGC 2117129 36 100.0 34 .................................... CTGCGTACTAAGCGGGTTAGCACTGCTGGACCGC 2117199 36 100.0 36 .................................... CGTCGCCGGGGTCCGCGAAATGGTCGCTGCCGTCGG 2117271 36 100.0 35 .................................... ATGACGCAGATGGCGTATGGTGGCGCTTATGACGA 2117342 36 100.0 36 .................................... ATGCGATGACCCAAACTGCGGAGGTGACTGGTGAGC 2117414 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 72 36 100.0 36 GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC # Left flank : CGCGCCACATCCGCAGCGATCCGGCGAAACCCCACCCGGCTGGCGCCCTTGGCCACCAGCGCCGACACGACCACCGCCGCGGTGTCCGCACGGCGCAGCAACGCCGTCACCGGCAACAACACATGCGTCACCCCGCACCCGGTGCACCGCGACCGGCGTGGATGCAGCTCCACCGGCCCATCCACGCCGCGCAACTGCCGCGCCCGCGCCCGCCCCCACCCCGCCAGCACACCCCCGCAGAACGGACAGCTCAGCTCACCAGCCGCCAACCTGCGCTCGACTAGATCGACATCTGCTTCTACGGTGACCACAGCGCCTCCGAGCGCGAAAAGGCGGCCCTCCCGTAGCACTCGGCCAAGAGACGATGGGAGGGCCGTCGCCTACCAATGACTTGATCACCGTGCCGCCCCGGCACCACACACACCAAACCGGGCCCCAACCGGCCGACACGCTCCTCACCGTCAGCGCCGGAACCCTACCCCCGCGTGCTCACCCTGAAT # Right flank : CAGCCTGGCCAATTCTATGCTCCTGACCAGGCCGTTGAAACCCCTTCGCGAGGGCCCGCGTAGGTCAGACCCATAAGGTGGTCAGCGTCAGGCGTTCAGTACACGCGAAACATGCCCTGACGAGGATAGATGGCGCGCGAGAGCCTGCTGGAAATATCGTTTCCACGCGGGTCTCGCGAGGCAGATTAGTTTAGGTGACAATCGGGCCGCTGGTCATGATCGGTCGGGACCGTCCGATGAACGCGAACCTCCCATGATCGACATTCTGGACCAACCCGAGGTCGCAGAGCAGCACCGAGTCCAGGGCGGTGACGATAATCGTGGATATTTCGTTCTTGAGACGCGCAATGCGTGCCGGGCTCGCATCGACGACGAAAACGCTGTACTGGACGCGATCACCGTGCCGCTCCAAGCGTTTTGCGAGTCGGTCACGTCTGCGATCGTCGGGTATATCGTAGGCAATCAAAAAACGGCGCGCGTCGCTCCGACTCATCGCGTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGTGCGGCCGCCGAAACGGCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //