Array 1 505839-503545 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERG010000017.1 Streptomyces griseoaurantiacus strain MBK6 scaffold3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 505838 33 90.9 28 .....................C.......C..C CCCAACCCAAACAGCTGGCGCAGTTCAC 505777 33 90.9 28 .....................C.......C..C TCGCTGCGGCCGGCGCGAAGGCCGACGA 505716 33 87.9 28 .....................C.......AA.C TGCGGGCCGCCGCTGATTCCGTCCGGGC 505655 33 87.9 29 .....................C.......CGA. GCGCCGGATCGCCGTGGCCGAAGCCCGGG 505593 33 90.9 28 .............................C.CC GCGACGACTACGAGGCCGGCTCCACCAT 505532 33 90.9 28 ..............................GTT ACGCCTCCTTCGCGGGCGCGGCCGGACC 505471 33 90.9 28 .............................CG.G ACTCGTAGGGGCTCAGGCCGAGGACTGC 505410 33 97.0 28 ................................T CCGACCTGTCCAGCACCTTCGAGTTGGA 505349 33 97.0 28 ..............................C.. AGACGCAGGGCGAACTCGCGCTGTACCC 505288 33 87.9 28 .............................ACAC AGTGGAGATGGAGGGGACACGTGGTGAG 505227 33 93.9 28 .............................C.C. TGGGCCCCGGCCAGCAGATCACCCTCGT 505166 33 90.9 28 .............................A.CC TGCGGTGGCGGCCGGCGCTCGCGCACGC 505105 33 84.8 29 .....................A.......CCCT GCGGGACATCACGACGGGCAAGACCAAGG 505043 33 93.9 28 ...............................CG CGGTGATCATCGCGGGGACCGGCATGCT 504982 33 90.9 28 ..............................CAC CGATGAGGACCCTGACGAGGACAACGAC 504921 33 87.9 28 .............................AAAC AGCAGCCCGCCTTCGAGGCGCTGCGGGC 504860 33 90.9 28 .............................CG.T ACGGGCGGCACCGCATCGACACCCTGCC 504799 33 90.9 28 ..............................GTG TCATCACGTCCCTGGAGAGGCTGTCGCT 504738 33 93.9 28 ..............................AC. CGTTCTGGGCGCCGGACAACCGGCGCAT 504677 33 90.9 28 .............................CG.G CCGGGTTCATCCGCAACGCCCGCATGGT 504616 33 100.0 28 ................................. TCTCCATCCTCGCGGACGGCATCGCCAC 504555 33 90.9 28 ..............................CAG CGGCGACGACCGGCCGCCCTTCGTCCTC 504494 33 90.9 28 .............................CC.T AGATCCGGTTCGCAGACGGGAGACCGAT 504433 33 97.0 28 ................................G GCCTGTACTGCAACACGGACTACTGGCT 504372 33 100.0 28 ................................. ACGTCGCCGGGACCGAGCCGGACGCGGC 504311 33 97.0 28 .............................C... TGTCGGTACGCCGGGTGCCGAGACGGGG 504250 32 93.9 29 .............G..............-.... GTCGGGGTTGGAGTGGGAGGCCCGTTCGG 504189 33 90.9 28 ..............................CCG ACGCGGACTCCATCACGATCACGTGGAA 504128 33 93.9 28 .............................T..G TTCGCGGCATGGACCTGACCACGGGCAC 504067 33 93.9 28 .............................TC.. GGAGGCGGCAGCCGATCGGGCGATCGCC 504006 33 90.9 28 ..T............................CT ACCGGCATCAGGTGGCGCTCGCGCCCGG 503945 33 90.9 28 ..............................CCT TCACGCGGGCGCCGGACCAGTGGCCGCC 503884 33 93.9 28 .............................C..G CCGACGCGAAGCACCGGCTGAAGACTGT 503823 33 87.9 28 .....T......................A.GT. GAGGTCACCATCACCGGCGACGGGCCTC 503762 33 87.9 28 ....................A........C.CT TGACGGTCGGCCCGGCCGTCCTGATGAC 503701 33 90.9 28 ...............A.........G.....C. AGGTCAAGGGGAAGACGAAGGAGGTCGA 503640 33 84.8 28 .................T...........CCAG CCCGCCGCTTCCACATCCTGTCCGACGG AAA [503618] 503576 32 81.8 0 ........-.........A.A.G........CG | ========== ====== ====== ====== ================================= ============================= ================== 38 33 91.5 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTGA # Left flank : GCGGGTGCCTGGAACTGCGCTGGCGGAAAGAGTCCTCACAGAGCGCGGCTTGGTCCCACCGGAGATGACTGCTACCGCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGGCACCCCGCTAGAGCAAGTCAGTCCCCCTCCCAAAGCGCAAAATGCTGGGTGGCTGCCTGCATCGTTCGACGCCGTCGCTGCCTGACCGGTCCTGGCACCGCACTTCCCGCGAACCGGGCGGCTGAGTGTCAGCTTCAACGATCACGGCAACTATTGCCAGATCACGCAGGGGACTCACTCATCCTGAAGAAGCAGCTAGAGTCGAAGTATGGCCACCCCCTTCACGCAGTACGTGTCGATGAAGTCGGTAAAGAAAATGCAAAGCCCTCGCTAAGCCGCAGGTCAGGAAGA # Right flank : GTCCCGAAGTAACGTCCATGCTTCAACGCCCTCGCGGCGGCCTTCGGTCCGTGACCGCTTCTGGGTGGACCACTCGAGTGGACGTCGGCTCCGCTGCGTTGGGTAGGGCATGGCTCGAGGGCAACGATGCCTCTTTACTCGTGCTCGCCGTTGCCTCGTGCGCTGAAGGCGGCTTGTTTGCGATCGTGCCTCGCGCCGCAGTCACCAGCTCTGGCTGGACGGCGACGACACGGCCCTCGCTGTGGAGGGCCTGAACGGTGTTCGCCAATGTGGCGAGGGTGGTCGGACTGTCCAGCTGCGCGGGGAGCGTGTAGATGTCCAAGGCGGTCTGGTGGAGCCAGCCATGGGCGCGGAGGATGCCGTCGCCCCGGTCCGGCTCTTCGTGGGTCGACGCCGTAGCGGCGACGAGGCCGAGTTGGGGGTGCTCGGCGAAGGCGACGTCCGGGGTGATGCCCGCTCCCTGGGCGGGTTCGCTGGGTGGCATCGTCAGGTCGGTTTCG # Questionable array : NO Score: 4.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.08, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2816-2539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERG010000016.1 Streptomyces griseoaurantiacus strain MBK6 scaffold17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 2815 33 100.0 28 ................................. CCCTCATGGGGTACAAGGTCCACAGCGT 2754 33 90.9 28 .......T.....................TT.. ACTCTCGGACCAGCATCGGGAACCCGCT 2693 33 93.9 27 ..........T..G................... GGGCTCGGCGCGGGCCCAACCGGTCAG G [2665] 2632 33 87.9 28 .C..........................A.G.G AAGCGGCCCGGCCGGAGCGGCCGCCGGA 2571 33 75.8 0 .................A..A...C...AAGGT | ========== ====== ====== ====== ================================= ============================ ================== 5 33 89.7 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGACA # Left flank : CCACCCTGACCAATGGCACGCTCAGGACCCCGTCAACCTCGCCCTGTCCGCCGCCAATACCTGCTTGGGGTCTCACAAGTGGACCATCTCGACGTCGCGGCGCTCGGAACGGTCGTCGGCAGGTGTCCTGCCGGCCGGGGTCAACTACGCGTGTGGCGGAGCCTGATGCCAGCAATGCTGGTGATCGCCACCACCGCCGTCCCCGACCATCTGCGCGGCGCCCTGAGTCGATGGACCAGCGAAGTCGTACCCGGCATCTTCGTCGGCTCGGTCTCCGCCCGCGCACGCGTCCAACTCTGGCAAGCCGTCACTGAAACTGTTGGCGACGGCGCGGCCGTCCTGATCCACCCAGCCCCCACGGGGCAGGGCTACGCCACCCGCACGGTCGGCACCCGCCGTCGTGCTCCGGAGGACTTCGGCGGCCTCACCCTCATCCGCATGAGGGCCGCGAAGCAAGCAAAAAACGAGCAAAGCCCCCGCTAGACCGCAGGTCAGGAAGA # Right flank : CGTCCGTCCGGCTCGGCCAAATCGAGAATACCGAGGGCGTCCTTCTCATCAACGCGCAGCCGCTCCGAGCAAGGCGCTGCCCCTACTTACCGCAGCAACGTGAACACAACCGCCGCGACAAGCCCGCCGACCGCCGCCCCGACAATCGTCTGGGCGATGGTGTGGTCCCGTAGGGCCACGCGGGACCAGCCTATGACCGCGACCGCGGCGTACAGGAGCGTAAGTTCCGGGCCGTAGCTGAGGGCCAATATGGTCGCGACGCCGCTGGCGACGGCGGTGTGGACGCTGACCTTCCACCAGTGGTTGACGAGCATGACGGACAGGAGGCCGAAGAGCATGGCGACGACCAGGGCGAAGACTTCGCGTGGTGCGTCGCAGAGGACGAGGAGCACGATGGCGACGAGCACGGACAGGGCGGTGGCCAGGAAGACGGCCAGCCGTTGGCTGCGTACCTTCACGTGCTTGTCGGTCCACCAACCGGCCCTGACGCCGACGAGGAT # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:-0.02, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13959-15644 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERG010000016.1 Streptomyces griseoaurantiacus strain MBK6 scaffold17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================== ================== 13959 33 93.9 28 ...............................CG TCGTGATCGCCTCCCACTGCATCCCGCA 14020 33 87.9 28 .............................TCTG GGCCGTTCGCGGGGGTGCTGGGCGTGAT 14081 33 93.9 28 .............................T.C. GGGGCCGGTGCAGCACCACCTCAAATCC 14142 33 93.9 27 .............................CC.. GGCTTCCTCGAGGACCTGGCCGCGCAG C [14173] 14203 33 87.9 28 .............................ACCT CGCACGAGCCGCGGTTCGACCCGCGTGC 14264 33 90.9 28 ..............................ACG GCCTGGCGAACCTCGGCGTCGTGGACGG 14325 33 93.9 28 ..............................C.T ACGAGCGTGAGATCGCCTTGTTGGAGTC 14386 33 90.9 28 .............................CC.A CTACACGCAGGTCATCTTCGGGTATGCG 14447 33 90.9 28 .............................CAA. GCGCCGGCCGACCCGAGCAGCTTCCCCT 14508 33 93.9 28 .............................T..T CCGATGCCCAGGCGAATGTGGCGGAGAC 14569 33 93.9 28 ..............................G.A ATCGCATGATGCGCCTTTCTTCGGGTGT 14630 33 97.0 28 ...............................C. TCACCCGGTTGCGGGAAGAGGGCGTCGT 14691 33 97.0 28 ...............................C. GGTACATGGACGACGCCCAGGTGGTCGC 14752 33 97.0 28 ................................G GCCGCGTCTCGCGGATGCCGCCGGTTAG 14813 33 93.9 27 .............................C.A. GCACACTGCGAGCAGTACGGACAGGCC C [14843] 14874 33 93.9 28 ...............................CT CGTCCAACCCGCTGGCGACGGGCCGTCG 14935 33 90.9 28 .............................TG.T TCGCCCCAGAGCCCGAGTCCTTCGACCC 14996 33 87.9 27 .............................TGAA GGGGGCCCCCGATGAGCCTCAAGCCGG 15056 33 87.9 29 .............................CCCT CCTCGACGCCTACCCCACCGACCTCCAGG 15118 33 87.9 28 .............................CCAG CCGCACCGGCGGCGAGGAGACGAGCCCA 15179 33 100.0 28 ................................. GCGGCCAGGTGATGCTGCGGCCACCCCA 15240 33 90.9 28 .............................CC.G GGCCGGACACGATCCCGTGGCTGCCCTT 15301 33 100.0 28 ................................. CCGAGCAGATGGCAGCGATGGTGCCGGG 15362 33 100.0 28 ................................. TGGCTCGCGATCCGATCTGCAGGATCTG 15423 33 90.9 28 .............................A.CT CCTCGTGCCGCTGGTCGTCCCCCTCGGG 15484 33 93.9 28 ..............................CC. ACATCCCCTCGTGGAACTGGCGCTCCGT 15545 33 93.9 30 ...........................T..C.. GTCCGAGAACTCGGGCGTGCTCAACATGTC C [15576] 15609 33 78.8 0 C...G......A.....A..........A.C.A | G,GA [15614,15617] ========== ====== ====== ====== ================================= ============================== ================== 28 33 92.6 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTGC # Left flank : CGCAACGGTGAGCCGAGATGCTCACTGCCGTGCCAGGAACAGAACTGGAAGCCTGAAAGCTTGCCGATGTCGTGCAAGCCGGCGCACAGCCCGACCATCGCCCGAGCCTCATCCGGTTCGGTTGCGAGTCCCAGTCCAATCGCGATGCTCCGCCGCTGGTTGTCCGACAGGTACACGTCCCACAGGTGCAACGCCATGGCAGCCGCATCGAGGAGATGCCTCACCAGCGGGTACGGCGGCAGCTCTGGATCAAGCCCGCGCGACTTCCCCCAAACGGTCTCGTCCGGCCCTTCTCCAATGACAGATGACATGACAGCCCCTCCCCAGTGCCACTGTTCACGGCCTCCGCGCATCACGGATCCAAACACACGCCCCTGACATCGCCCTGGCACGAAGAGAAACGGTTACAGTGCTGGCGTGATCCACCTGTTGCGGCATTGCGGACCCGCCACCCTGGCAAAGAAGTGGCAAAGCGCTAGCTAAGCTGCAGGTCAGAAAGA # Right flank : AAGACGACGCCGTCCCGCCAGCGCTGCGGCTGTCCTCCTCGCTGACGAACGTAGCGGTGTCTCTAGCGGCACTGTCGTGCAGGGATTGTGAGGACCCTCCAAACGCACCGGCGGGGTCAGCATCGCTCCGGCGAAGGGCACCCGATGCGCCGTGGCCGTGAGGACGGTGCGGTCGCGGGATGCCGGCAACGGTATCGGAATGCTCTGGTGGGAGGGCTGCGCGGAGTGTGATGCTTCGTCGAAGTCACATCTGACGGACCGTCAGCTAAGTCAGCATTGGGTCAGCATCAGTCCGGCTAGACATGGTCACAGCTGATGAAACCCGCGCTTCGCGGGTCGGTCTCTGGGCGCGGCTTGGAGTCGTTCGCGTGTGCGGATTCCGTGGGCCGGGCGAGAGGGTTCACGCCTCGCCCGGCCACGTTGCGGCGGGAGTCCCGCAGGACGCTCCTAGCGGGTCCTACCTCGGGGTTTGAGGGGTACGGGCGGCAGTTCGGGGGCCG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //