Array 1 108896-119011 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZV01000009.1 Porphyromonas canoris strain COT-108 OH2762 contig_9, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 108896 30 100.0 37 .............................. AACGATGGGACGATCGACTACTCCGTCATGTTTGAAG 108963 30 100.0 37 .............................. ATTTGTATCTCGTTCTGACGAAAAAATAAAGAACGAC 109030 30 100.0 35 .............................. AAATAGAAACGAACCAAATATGGTACCGATATGAC 109095 30 100.0 36 .............................. TCGAAAAACTCTTAGCCGTCGTCGTCTTGCCCGATC 109161 30 100.0 36 .............................. AGATATGAAAGACAAAAACGAACCGATAGGAAAGAG 109227 30 100.0 36 .............................. TTCCCGCTCCTTTATTGAACATGGATGCTATTGCAT 109293 30 100.0 37 .............................. CGGTAGGTGCATTTAAGGCATTCGGGGGTGATAAGCT 109360 30 100.0 34 .............................. TCGATAGGCTTAATGCGTTCGGGCGCGAGTTGCT 109424 30 100.0 36 .............................. CTTCTTTGAATAGCCTTTCAATAGTGGCTATCAATT 109490 30 100.0 36 .............................. GGCAAGAAGACGGTAACCGTGCAATCAAATACCAAC 109556 30 100.0 37 .............................. AGTATTTCGACAGAAGGGCTGGCAGAAAGCCTTGATG 109623 30 100.0 37 .............................. TGATTATGAATCCTTTAATTGCAGCTAGTTTAATCTC 109690 30 100.0 37 .............................. AATAATAACGAACATAGTAATCCAGTCTGTGCATAAT 109757 30 100.0 37 .............................. ACAGATAGAGAAACCGACGGGAGAAGTAACGAAACCG 109824 30 100.0 36 .............................. GAGACAGAGTGGGAAGACATCTTTAAGACGCTCTAC 109890 30 100.0 37 .............................. GTTATTTTGTCCATATACTCTGACATAGACTGATCGT 109957 30 100.0 35 .............................. TAGGGGTGTCTAAAGATACGATAGCTCACGCCCTC 110022 30 100.0 36 .............................. AACACCCCTACTCCGCGTTATTTCTCGAAATGGGGT 110088 30 100.0 36 .............................. TAAGACGGAGTTTGAGATCGACACGACTAAAGTACT 110154 30 100.0 36 .............................. TAAAACACCTGTACGGAGACAGCAACACGCGCAGAC 110220 30 100.0 36 .............................. ACCCTGCTATGTTGCTGAATATGAAGAGTTTGCAAC 110286 30 100.0 37 .............................. TTCGCACCGCTCTGTACCACGATGGTACGGCGAAAAT 110353 30 100.0 36 .............................. AACCATTCAGATACGCCAAGACTCGGCATATATATA 110419 30 100.0 39 .............................. TCCCTCATCCGACTTGTACCACGCGACCTCCGACCCCGT 110488 30 100.0 35 .............................. CGCCGTAGCTTTAGAGAGTGGTGTGAAAGGCGTTT 110553 30 100.0 35 .............................. CTATATCGTATTCACAAACGCAAGCATCGTAGCAA 110618 30 100.0 34 .............................. TCGTTGCTATCATCGCTCAAATTGCTTCTTTAGC 110682 30 100.0 34 .............................. ACCCACGTGTTCGGCATCCACCCAAGAGGAGAGA 110746 30 100.0 36 .............................. TATCGCGGTATCGCATTTTAGCATTTTTAGAAAGGG 110812 30 100.0 36 .............................. CATCGGGGTACGATTACGAGCAGGTGATGTACAAGA 110878 30 100.0 36 .............................. ACAGCGTGTTGCGACCTCTCCCGCATCCCCTTACGG 110944 30 100.0 36 .............................. TGTGCATGACAGCTCCCGCTCTCCGAAAGGGTATTA 111010 30 100.0 36 .............................. TAATCGACAGCAAGCGCACGGAGATTAACTCGTTTA 111076 30 100.0 37 .............................. ACACCTCCCGTCTGTATTGCTCTCGATAAGAAGACTC 111143 30 100.0 36 .............................. GGGGGGTCAGGCTCTACCCTGCACGACCTGCTGGAG 111209 30 100.0 35 .............................. CGCCTACCCTGTCTCCGCCGCTTTCTTCGCTGTAA 111274 30 100.0 35 .............................. CGAGGCGCACAGGCGAAAGCGATAAAGCGCCTGTA 111339 30 100.0 37 .............................. ACCTCTCGCGCTACGCTGAGAATATTCGTAACCGACA 111406 30 100.0 35 .............................. TGCCACCAACGAGAGCACCATGGAGGCAAAAGGGA 111471 30 100.0 36 .............................. ACCCTATCTCCGAGTCCGAACACGCGCTGTGGGTAT 111537 30 100.0 36 .............................. CTTGCAGTAGCCCTATGGCTCATGAAAAGAGCCGAT 111603 30 100.0 39 .............................. CGTTTATGGAAAATCTTCATTTGACATATAAAGAGGTGT 111672 30 100.0 37 .............................. TAGAGGGTACAATATCGTGTACCTGCCGGACTCGCCG 111739 30 100.0 36 .............................. GTATACCCGGATACTCCAACTCCCAAACGGGATTCT 111805 30 100.0 35 .............................. TCTGCTATGGTTTTGCACTCCTCGACAGTTGCGAT 111870 30 100.0 35 .............................. TATCGTGAATACAGGATTTATAACTAATCTAATGC 111935 30 100.0 35 .............................. GGACGACCGCGCTCGTGGGCTGTTCCAGTTCTACG 112000 30 100.0 37 .............................. GCCCTCTCCGAGAGTGTCGTACGCTACCTGCGTCTGT 112067 30 100.0 36 .............................. TTCCTATGAGAACAAGGATCGACATCACCAGATACT 112133 30 100.0 39 .............................. TGCCATCCGAGTTGCACACCTTCAGCCCTTGAGTCTGTA 112202 30 100.0 36 .............................. GGGCGTCCTTGTCGGACACCTCCTCCGTTTTGAGTG 112268 30 100.0 35 .............................. AGCTCTTTTTCGAGCGCCTCAAAATCTTCACTCTC 112333 30 100.0 37 .............................. GTGTATGATGGCGGAGGTTTTGAGTTACATTATATAG 112400 30 100.0 37 .............................. AAATCTCTAATCGCCTTGTCGTACTCGCAAGGTCGGA 112467 30 100.0 36 .............................. TTTTTCGCTTAACTTTGTTTCGCTTCTAACTTATTT 112533 30 100.0 36 .............................. TGATTACTCCCGATGAGCATGGAATTGTTCTTGGCT 112599 30 100.0 37 .............................. GTCGACGAGACCATAGAAGGACTCATCCCTCGTCTCG 112666 30 100.0 38 .............................. TCTCGCAGCTTCGCTTCGAGGAGTGCTCTGCGGTGCAT 112734 30 100.0 36 .............................. AGCTCGCTATTGAGCTGAATATCGATGCGCAAAGGC 112800 30 100.0 37 .............................. AAATTCATGCTGACAATGTTCCCCTACGATGCCATAC 112867 30 100.0 35 .............................. ACCCAGAATGCGTCCACCATCTCCTCGATCGTGAT 112932 30 100.0 36 .............................. TTTCGTTTCTCAAATCAAAAGTTGATAGATTATTTT 112998 30 100.0 35 .............................. ACAACGAACAAGGGGCAGATAGTCGGGCTGGACTT 113063 30 100.0 36 .............................. TCTACGAGAACGAATACAATCGTAGCAAACGCCACA 113129 30 100.0 36 .............................. TGGGATAATCATCACCATCATCAAGTAGAGCAGAAT 113195 30 100.0 35 .............................. ATGTACAGCGCGTAATCCCGCACTTTCTATCTCGA 113260 30 100.0 37 .............................. TATGTCGGTTGTAAGTCTATCTTGTTGCCCTTTGCAT 113327 30 100.0 37 .............................. CCTGGCGGTGCTCTCTAAGTATTCAAGATTCGGATAG 113394 30 100.0 36 .............................. TCAAGTATTTTTCGTTGGAACTCAGCCCATTCGCAA 113460 30 100.0 36 .............................. GGGCGGACACTGTTAACGAGGGGGTGGATATTGTGA 113526 30 100.0 37 .............................. TTACATGAGGGTCGAGGTCAAAAACGAGGACGGGCAA 113593 30 100.0 36 .............................. AATATGGTGACAAGGATCTCCTCGTTACAAGCCTTG 113659 30 100.0 36 .............................. CCACCTCGTTGCCGTCCGCATCTGTAAAGATGAGAT 113725 30 100.0 37 .............................. AACGAAAAGAAGTACACATACGAAGTCTATACAGAAG 113792 30 100.0 35 .............................. AAGAGCCTTTTTGTTGCTCTCAGATGAAATGGAGC 113857 30 100.0 36 .............................. CGTTTCTATTTTTCAATGTACCACAGCGAGTCCGGC 113923 30 100.0 37 .............................. TTCGCCGACAGAAAGGTAAGATCGCGGAGCTGGCTTG 113990 30 100.0 35 .............................. GGAAGCTCTATCCATTTTGCAGGTCTTTTCCCGAA 114055 30 100.0 36 .............................. TACGAAGTCGCTTCAAAAACAACTGATAATGTCGGA 114121 30 100.0 37 .............................. AGATAAGCTCTTGGTTATTATGTTTAGCATCCGCAAT 114188 30 100.0 35 .............................. ACACGATGATCGCCGCGTTAAGGACAACCAACAGG 114253 30 100.0 36 .............................. ACGCACTGCACACCTCGCAGACCTCCCCTCCCACAA 114319 30 100.0 36 .............................. ATTTACACAAATCTTGATAGCTACCGCACTCTTAGC 114385 30 100.0 36 .............................. CCCTTGTTCGCTATCGTACCGTTGAACAGCCCTTTA 114451 30 100.0 37 .............................. AACCGATACCACCATCAAATATAATCTTTTTGATTTT 114518 30 100.0 36 .............................. ATGTAAGATATTTTACCCTCCTGCACGCGCACCCCT 114584 30 100.0 37 .............................. GTCTATACGCGCTGTACGGCACACGAGGCAGGGTGTA 114651 30 100.0 38 .............................. GCCGCTTGCCAAGGGAAGACACATCTTTCGGGGTGAGG 114719 30 100.0 36 .............................. CTGGCGGTGCTCTCTAAGTATTCAAGATTCGGATAG 114785 30 100.0 37 .............................. CGTTCTCCAGGGCTTCTTCGAGGATCTTCTTGCTCTG 114852 30 100.0 35 .............................. GGTTCCTGCGTTGCAGAGATTCACGAAATGCCAGA 114917 30 100.0 37 .............................. CTGACGGCATCACGGAACAAAATACGGCATGGACTGT 114984 30 100.0 36 .............................. CTATTCTTCGAGCATTTCGGAAGAATCGTCGCTCGA 115050 30 100.0 36 .............................. CTCTCTTCGAGCCGTTATATTTTGCCCGGAGAAGAA 115116 30 100.0 36 .............................. CAATGCTTGACCTGATATTGATGTTTGCCACTGCTG 115182 30 100.0 38 .............................. TCTAATCGCAGCACCTGTGCAACCTGTTCGAGAGAGAA 115250 30 100.0 36 .............................. GCGCCTACCCTGTCTCCGCCGCTTTCTTCGCTGTAA 115316 30 100.0 36 .............................. CCCGTCAAGGGTGTACCCAAGACGTGCCTCCACCCA 115382 30 100.0 37 .............................. GCGTCCGCACCTTCATCCACAAGTACTTTCCTTTTTC 115449 30 100.0 37 .............................. TTGTTCGCACGCCGGGCAATGCAACACGGGCAAGCAG 115516 30 100.0 38 .............................. GTATCTCTCCCTACGTCGATCGCTCCGAACTGCACAAC 115584 30 100.0 37 .............................. TGCTTTATTGTTTTGGTGTTTTATTTTTACTTTGCAA 115651 30 100.0 37 .............................. TGTCCAGTCCTTCCATGTCCAGCCAGCCGCACCACAG 115718 30 100.0 38 .............................. AGGTCGAGATAGCCGCTGTTGTGGTTAAATACCTCAGC 115786 30 100.0 37 .............................. TAGTACTCTTTGAAGCATCAAGCTCTGTCGCATAGGT 115853 30 100.0 37 .............................. ATCTGTGTCTGAAGTTATATCGGTAAGTGTGACAGTA 115920 30 100.0 37 .............................. CGGAAGTTCTTGATGAAAAGGAGCTTGCTGAACGCTA 115987 30 100.0 37 .............................. TAAGGGCAGACACGACAGAAGCCTTAACTGGGTCTAT 116054 30 100.0 36 .............................. CGTGGTCTTCGGAGTATCGAATATAGACCCTAAGTG 116120 30 100.0 36 .............................. CTGCGTGTTTGCCCTTGAAGTGTTTGAGCATCCGAA 116186 30 100.0 36 .............................. TAGCGGAGGAGGTCGCGCAGAAGTCGCGCGAAGCGA 116252 30 100.0 35 .............................. TTTGTAGGCGGTGCAGCAGAATTAAAACAACTACT 116317 30 100.0 36 .............................. TCTGTTGGGTCTATCAGGATGAGTTTGTTTTCGAGG 116383 30 100.0 38 .............................. AAGAAAAGGGAGCGCAGATATTTCTTGTAAGACGGAGG 116451 30 100.0 37 .............................. TTCTCACAATAGAGCCTCTTTTTATAGCCCTCAAAAA 116518 30 100.0 37 .............................. AATCCGATGGGGTGGACATTATGAACAGACAAAAGTA 116585 30 100.0 37 .............................. AATTTACGGGGGGCGCATTTTTAGAAAGAGTGTCAGC 116652 30 100.0 36 .............................. TTGCAATTCGTCAACGAAAGAACCGCAAACGACATC 116718 30 100.0 37 .............................. AAGATCCCGGTCGGCTCCAAGATCATAATCTCTACTC 116785 30 100.0 35 .............................. CAAGATAAAGGATGCTCGGACAGGCGTTGAGCGTC 116850 30 100.0 36 .............................. AAAGCTACAACGCTTCAAGGAAAAACTCTTGCTCTC 116916 30 100.0 37 .............................. TTTTAAGATATTATGATGTAATAGACGGCGATACGCC 116983 30 100.0 36 .............................. TGTTGACCAGTTAGTGGGTACTGCTGAAAATCCTCT 117049 30 100.0 49 .............................. ATTACGATTGATAGTCCTATAATATGGCTATTGAAGATTTTCTAGGAAT 117128 30 100.0 36 .............................. TGTTGACCAGTTAGTGGGTACTGCTGAAAATCCTCT 117194 30 100.0 37 .............................. GGAATTTGTATGGTTATGAGCATGATGTTGAAGAACA 117261 30 100.0 36 .............................. AAATTTCTCATCCATCAGAGCATCGGAGCCAATAGC 117327 30 100.0 38 .............................. ACCATCCCGAACCAGGCTCCAACCTTGAGGTATATAAT 117395 30 100.0 37 .............................. GACGACGACTCTTCCTTGCATCACGAGGTAATCTCTT 117462 30 100.0 37 .............................. ATAACACTTTTATTAGGTGCTCTACTCGTCCAGCTAT 117529 30 100.0 37 .............................. ATAGCCTGCACTACGTTCTCCGTCAGCTTGCCTCCGT 117596 30 100.0 37 .............................. CCTGCCCCCTCTGTCGAGGACTTAAAGCGCATCACGG 117663 30 100.0 36 .............................. GATATACCGCTATAATGTTACTGTTCTACATCACAT 117729 30 100.0 37 .............................. TCCCACGCCTCTTATCTCGGTCGTCGTGGACGGCTAC 117796 30 100.0 36 .............................. CGATACCTCTGTTTCCGTTTTTGTCGAAGAGGTAGA 117862 30 100.0 35 .............................. GGAATATCTATTAGGTATTTCATGTGTTCTGAGTT 117927 30 100.0 37 .............................. GTATATAACCGCCTCGTCTATACCGCTCTGCACGAGG 117994 30 100.0 36 .............................. AAGGATTCATAATCAATACAAAATATTAGGGTCCTT 118060 30 100.0 34 .............................. CGTTGAGCAAGATGAGCTTCGCGTCGATGCTCGA 118124 30 100.0 36 .............................. CTCGCAGCGAGCGACAGAAAAGAGAACCTGACAGGC 118190 30 100.0 36 .............................. TGCCTTGACGCCTGTGCGATACTCCGACTCCACCAC 118256 30 100.0 36 .............................. TTCTGAGCACAACAAGCACCGAGACGGCTCCGCATC 118322 30 100.0 37 .............................. AAAGAGAGTATAAATATATCGTCAATGACACGAGCGC 118389 30 100.0 36 .............................. ATAAGATAGATGGCGTTATAGCTATGCTTGAAGCGT 118455 30 100.0 36 .............................. TTTGCAGAGGTGTACAGCGAAGAGGCGAACACCGAA 118521 30 100.0 34 .............................. CAAAGGGGGCGAAACTAAAGCGAATGTACATAAA 118585 30 100.0 34 .............................. AATTTCTATCGAAATTCTTTCAGATTGCAGGTAA 118649 30 100.0 36 .............................. TGGCGATAAAGGTTATATGATTACCCCCGACGAGCA 118715 30 100.0 38 .............................. CAAACAGGACGCAGAGATCTCTAAGCGCAGCGCGGAGA 118783 30 100.0 36 .............................. CTGGGGACGTACCACAACTGGAGAGACACGAGCGAA 118849 30 100.0 37 .............................. TGTAATCATCCGAAAAATATAAAATAATATGGTAGTG 118916 30 100.0 36 .............................. TAAGCGTTTTAGAAATAACTGATAATGTCGAACAGA 118982 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================= ================== 153 30 100.0 36 GTTTTAATTCCACTAAGGTACGATTGATAG # Left flank : GTTAAATAAGTGTATTTTCTGAATTATCTATTGCATAGTTCAGAAAATGAGCGTACCTTTGCAGTACAAAGATGAAACACAAGTATAAACCTAAAAACAAAAACAGCAATGAAAACTATTAACAGCAACAAAATCAAAATTCTAAAAGAGAATTACGAGAAACAAACTAACACTCACGAGGTTTCTCTAAAAGAGTATATAGAGCTTGAAGCTCAATCTGATTCTAACTTCTTCAGATTTCTTTTTGATGAAGATTTTGAGCAAGATTTCGACACAAGTCTCACAGATGAGCAAAAAGAAAAATACGAACGCTTCTTGAACAAGATACAAGACTACAATATCTTCTACATCGAAGTAGGAGATGAAGATAACACATTGATTTTCAGAGAAGAATAAAAACTTGAAACAATAAAAGCAAATATGCTAACAAATAATAGCGAAGATACTAAGGTACGATGATAGTGTTGTTTAAGTGCTATATGTGCAAGAAGCTCCCTATT # Right flank : GCCGTAAAATTACATGAAAAAAGTGATGCAAACAAAGGGATAGAGAAGAGAAAGAGGGGATAAATTTTAGGGAAAAGTTGTCGTTCTATAATAATAGAAAAAGAGTGGAAGGTCGACAACAACTCTAATAATTTGATAATCAGATTTTATGGAACTATTTCTGAGAGAATTTGGGAAATAAATGCAGGTCAAATGTAGAGATAGACGACAAAGGGAGAATTTTATTCCAATTATCTGATTTATTTTCAGATACTTAATTAAAGAGAATCAAGAATTGGATATGTAGCTCGTATTTGAATATCCTTTTCTAAGATAATAAAATTAAATGTTTAAACAGAAACTTAATGAGTTTAAGAGTAGAAAGAGAGTATAAAAGAAGAGAGTCGCAATGTCAGATAACATTGCGACTCTCTTTGTTTTGTGGAGAATGACGGATTCGAACCGTCGACCCCCTGCGTGCAAGGCAGGTGCTCTAGCCAGCTGAGCTAATCCCCCCTTAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCACTAAGGTACGATTGATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 3259-3480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZV01000014.1 Porphyromonas canoris strain COT-108 OH2762 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================== ================== 3259 33 93.9 30 G.....T.......................... CAAGGCTTTGGTACGGATGTTCTGCACCGA 3322 33 97.0 30 ......T.......................... CACCGCTTTGGTAGTGTTGGGCTGCGCCTC 3385 33 100.0 30 ................................. TATAGCTTTGAAAGTGTTGTCCTGCGGCTC 3448 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================== ================== 4 33 97.7 30 TAACTCCCTCACCTCGCTGGATGTGAGCAAGAA # Left flank : ACTGCTTTGACAATATTCTCCTGCGAAAATAACCTGAATCTTAGCTCCTTGAAGATCTCGAGCAGCATAAATGATAGGTTGTGGGTCAACCGCTGTAAGCTGAGCGCGGAGACACTGAACGAGATATTCCGCACGCTTCCCGATGTGAAAGGGCAGAGCACCGGTTGGAAGGAGATCTATATCGCAGGTAATCCGGGTACGGCAGCGTGCAACAAGAAGATAGCCAAGGACAAAGGCTGGAAATTGGATGTCGAAGATACTCCTCCTCCGCCTGCCGGCAACAGCATGACGATGACGACAACGAAAGCCGTCGGCGAGAAGATAAAGCTTTGGATCTATGCCAACCCGGCAGACCGTCCGAATGTCTGGATAGACCTGAACAACAACAAGGTCAAAGATGCAGGCGAGAGCGTAACCGTATTTGGCTCCTATCAAGAGTACACACTCGGTGCACAGACCGTTACGGTGTATGGAAAGGTAACCGGGTTCGACTGCGAAGA # Right flank : ACACTGCTTTGACACAATTCTTTTGCTCGAAGAACCCGAATCTAAGCTCCCTGAAGATCTCGAGCAGCATAAATGATGAGTTGTGGATCAACCACTGCAAGCTGAGTGCGGAGACGCTGAACGAGATATTCCGAACACTTCCCGATGTAAAAGGGCTGACCGAAGGCGAGAGAAAGATAGCCGCTATCAAAGGTAATCCGGGCACGGCGGCGTGCAACAAGAAGATAGCCACAGACAAAGGCTGGGAATTGGATGTAGAAGATACTCCTCCGCCTGCCGGCAACAGCATGACGATGACGACAAAGAAAGCCGTCGGCGAGAAGATAATGCTTTGGATCAACGCCGAGCCGGCAGACCGTCCGGACATCTGGATAGACCTGAACAACAACAAGGTCAAAGATGCAGGCGAGAGCGTAACCAAATTTAACTCCTATCAAGAGTACAAGCTCGGCTCTCAGACCATTACGGTGTATGGAAAGGTAACCGTGTTGACCTGCAGC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACTCCCTCACCTCGCTGGATGTGAGCAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 346137-346287 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZV01000013.1 Porphyromonas canoris strain COT-108 OH2762 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================== ================== 346137 25 100.0 38 ......................... CACAGCTTTGGTAGATTTGGGCTGCTACGGTAACGAGC 346200 25 96.0 38 ........T................ CACAGCCTTAAAAGGGCTATTCTGTGGAGCTAATCTGT 346263 25 96.0 0 ....T.................... | ========== ====== ====== ====== ========================= ====================================== ================== 3 25 97.3 38 TCACCTCGCTGGATGTGAGCAAGAA # Left flank : GTTCTTGCACTGCGAAAACAACAAGGAGCTGACCACTCTCGACATCGGCTCCGGTATTGATGATCAGCTTTACTCCCGCGGCTGCAAGCTCGGCGCGGAGGAGCTGGACAACATCTTCCGAATACTTCCGGATGTGAGAGGAAAGGGGAAAGAGAAGAAGATCCTTGTAGACAACACCCCCGGCGCAGCCGACTGTCATCCGGAGATAGCCACCAAGAAAGGCTGGACAGTGGATGTCAAGGGCAAGCCGCTACCTCCAACTCCTCCCGGCAATAGGATGACGATGACGACAAAGAAAGCCATCGGTGAGAAGATAAAGCTTTGGATATATGCCGAGGAAGCAGACCGCCCGAACGTCTGGATAGACCTGAACAACAATTATGTCAAAGATGCGGGCGAGAACGTAACCGTATTTGGTACCGAACAAGAGTACACACTCGGATCCCGGATCGTTACGGTGTATGGCAACGTATTCATGCTTACAAGCAACAGTAACAAGC # Right flank : ATACCAAGCTGGATGCTTTGGCTTGCGACTACAACAGGGATCTTACTTCCTTGAAGATCCCCGGCAGTATCAGAGACAGACTGCACTGCAAGGAATGCAAGCTGAGTGCGGAGATGCTGAACGAAATATTCAGAACACTTCCCGATGTAACCAAGCAGCCCGGTGGAAAGAAGACGGTCTATATCTATGGCAATCCCGGCACGGATGAGTGTGATAAATCCATCGCCACGAGTAAAGGGTGGAAGGTATCTCTCGACCCGAAAGAGTGGTAAGGTATCTCTCGACCCGAAGTAGCGGAGCATAAAATATTATAAACAGATTCGGGCAGTGCCGGTGCGATAAGTGCCGGCACTGCTTTTTTTGTGCCGAGACGGAAAACCGGGATCGGGAAAAGAGAAAAGGTCGGTTTCGGAGAGGATGAAAATTTCGTACGTACAAAAAAATATTTTCGTACGTACGAAAAAAAATTTATGTGCGCACGAAAAAAAAATTACGTGCGC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACCTCGCTGGATGTGAGCAAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 756783-758524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZV01000013.1 Porphyromonas canoris strain COT-108 OH2762 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 756783 37 100.0 41 ..................................... TCGAAAACCGCGACTAAGTTACGATCATTCTTGATTTGGAA 756861 37 100.0 39 ..................................... TGCATTATATGACCTGGGAGATTCAGAAAATAATCTTTT 756937 37 100.0 36 ..................................... TCCTGTTATGATACTCCAATGAACCCACCTATCAAT 757010 37 100.0 40 ..................................... AGAACACCTAGCAACTTCAAACTTAATCTCAGAAGATGGT 757087 37 100.0 36 ..................................... TCCAATATGTTATTACTGGAAAGCCAAATAGTTCTG 757160 37 100.0 37 ..................................... GGGATAATCCCTCTGCTATAATCAGAAGTTCAGAGCT 757234 37 100.0 35 ..................................... CATTCCCAGTGAAATCACAGACCGAGAGTCCCTGA 757306 37 100.0 39 ..................................... GAAACAACTGACCATGAGATTGGATTCGTTCCCTCAGCT 757382 37 100.0 37 ..................................... CCTTGCAATTACAATCATAATACCCCTTGGTAACAGC 757456 37 100.0 36 ..................................... ATCAAGAGTTCCTGGTGTTGAAACTCTGATTTTGTT 757529 37 100.0 38 ..................................... AGCAATGTTGACCTTCCAAACTTTAGGCTGTTCAGGGA 757604 37 100.0 39 ..................................... CGATAAAATCCCTACTAATAGTAGGAAGATTATCTTAAA 757680 37 100.0 37 ..................................... CCACCATCTAAATCGCTGATATTATGTCCCTCAGTGA 757754 37 100.0 38 ..................................... TCGTTTTTTGAATACCATATTTCTCTTTCAGTGAAGAT 757829 37 100.0 34 ..................................... GTAAAGGATTATCCTTTCAAGACGTAAAAAAGAA 757900 37 100.0 37 ..................................... AATTGATCATGGGAAACACCCCATCTTTGGTAGTCCT 757974 37 100.0 35 ..................................... CCGTCTTCTTCAGCTATCTCTAAAGCTGCTTCTCT 758046 37 100.0 37 ..................................... AAGGAATACACAGACTAGCCCTGCCCATTAAATAAGA 758120 37 100.0 38 ..................................... AAGAAACTCCATAGGCTTTCAAAGTGGAGATCTTCTAT 758195 37 100.0 33 ..................................... TCTTTCAGGAACTTCTCCTGCATGCCAATCCGA 758265 37 100.0 37 ..................................... TTTTTATTGAAAGGTTTACCTGTAAGCTTTTCAATCA 758339 37 100.0 38 ..................................... TGATCACGGGGGCTATAGTCCGCTTGTTAACCACTAAG 758414 37 100.0 37 ..................................... TCTTTTGTCTCTCTATAATCTTTGAAGATGTAGGTGA 758488 37 81.1 0 ...........C.........T....C....TT.C.T | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 99.2 37 GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Left flank : TCACACCGTATCGGGTAACGGACAGATCGTAGCAGAGCAAGGGGACTCCCTTAAAGAGACATCTGTTTCTTCTTCCCGAGAACGGAGAAGAAGCCCTCACTCCTTTGCTCCTGTTGTTATAGAGGAAGAGGGCTCTGCTATCGGCGTAAGCAGGGATACTATACTGATTCGCAAGGATAACCGGATAGTGAGAGAGCTGCCGGCTCCGGAAGTAAGAGAGATCTCTATAGAAGCAGAAGGTGTTACTCTAAGCGGTAACATGATAAAGTATTGCTCCAAGAACAATATCCGCATTCTTCGGAATGGAGAACCTCTACATCTTGAATAGGAATTTTAGATAGCCGGCGGGATATCTTTGTTATTCAAGAAAGAATAATCTTTCTATGAGATATATTGACGACATATGCGCAGTTATATATCGGTATTTTCGAAATTATTTTGCTTGTTTATAATCAGAGAGTTGCGAATTTACTTTTTTGTATATCGTTGATAATCAAATA # Right flank : TCAGATTGATAAGTAAGAAAGTTGAGATAAAAGGGTTCAGAAGAATGATTGAAAGGGGATAAAAGATGGGGTGAACGTGTAAAGAGAGGGAGATGAGGGCTTGGATGAGAGAAAGCAAGGCTTGAATGGTACAGATCGCGGTTTGATTTTTAGAAATCAAGCCGCGATTTCTTTTTCTTAATCCGTTCAATCAAAGATTTAGACGTGATCAGAGAAAGTTTTTAAGCCGTATATTGTGTTTCGGGAAAGGGGAGAGGGGGTGTCGGATGGCGGTCTGTCGGTTAGGGGATGAGGCATGGGAGACAGGGGGTAGCATTTTGATTTTTGCTTCCGGAAGTCGGTTTTTAGTCGTATTTTTGTAGTAGAATCAAAAAAACATAGAGAAAGATGCAAAAACCATCCATACCCAAAGGAACAAGAGACTTTCTTCCTCACGAAATGGAGCGGAGAAACTATATATTCGAGACCATAAAGAGCGTGTTTCACAGCTTCGGCTTCCG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTATACATATTCAGTCAGTAAGACTATCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 987266-987613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQZV01000013.1 Porphyromonas canoris strain COT-108 OH2762 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================== ================== 987266 33 81.8 30 .................C.....A.ACTT.... GAGTCGCAAGTCAATATTTTCAAAGCCTTG 987329 33 81.8 30 .................C.....A.ACTT.... GAGTCGCAGTTCAACGATGTCAAAGCGGTG 987392 33 100.0 30 ................................. TGGGTGCAGTACAACCCTGTCAAAGCGGTG 987455 33 93.9 30 .............T...C............... TAGGAGCAGTCCAACACTTTCAAAGCTATA 987518 33 100.0 30 ................................. CGGGAGCAGTCCAACACTTTCAAAGCTATA 987581 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================== ================== 6 33 92.9 30 TTCTTGCTCACATCCAGAGAGGTGAGGGAGTTA # Left flank : AGGACAACTCGGTTACCTTTCCATACACCGTAACGGTCTGAGAGTAGTCGAGCGTGTACTCTTTATTGATGCCAAATTCGGTTACGCTCTCGCCTGCATCTTTGACCTTGTTGTTGTTCAGGTCTATCCAGATATTCGGACGGTCTGCCGGCTCGGCGTCGATACCAAGCTGTATCTTATCGCCGACGGCTTTCGTTGTCGTCATCGTCATGCTGTTGCCGGCAGGAGGAGGAGGAGGAGTATCTTCGACATCCAATTTCCAGCCTTTGTCCTTGGCTATCTTCTTGTTGCACGCTGCCGTACCCGGATTGTCTTTGATATATAGCTCTTTCTCGCCTTCTGTCTGCCCTTTTACATCGGGAAGCGTGCGGAATATCTCGTTCAGCGTCTCCGCGCTCAGCTTACAGCCGTTGACCCACAACGCATCATTTATGCTGCTCGAGATCTTCAAGGAGCTTAGATTCGGGTTCTTTTCGCAGGAGAATCGTCTCAAAGCCGTG # Right flank : AGAGTAGCAGGACAACTCGGTTACCATTCCATACACCGTAACGATCTGAGAGTAGTCGAGCGTGTACTCTTTATCGGAGCCAAATTCGGTTACGCTCTCGCCTGCATCTTTGACCTTGTTGTTGTTCAGGTCTATCCAGACATTCGGACGGTCTGCCGGCTCGGCGTCGATCCAAAGCTGTATCTTATCGCCGGCGGCTCTCGTTGTCGTCATCGTCATTTGGTTAGGAACAGACGGAGGAGGAGTATCATCCACATCCAATCTCCAGCCTTTGTCTTCGGCTATCTTCTTGTTGCACGCTGCCGTACCCGGATTACCTTTGATATATAGCTCTTTCTTCCCTTCGGTCTGCTCTTTCACATCGGGAAGCGTGGTGAATATCTCGTTCAGTGTCTCCGCGCTCAGCTTGCAGTCGTTGCAGTCCAAATAGTTGTTTATACTGTTACTGATCTTTACGGAGCTTAGGTTTTTATTCTTCTCGCAGTCCAGAGATGTCAGAG # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTTGCTCACATCCAGAGAGGTGAGGGAGTTA # Alternate repeat : TTCTTGCTCACATCCAGCGAGGTAAACTTGTTA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //