Array 1 137377-136722 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYAA01000011.1 Veillonella parvula strain KHUD_VP2 NODE_4_length_160739_cov_481.196761, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 137376 35 80.0 43 AGAA...G....G.A.................... TACAAAGCGAGGTGGAAAATCTAAGAAAAGAAAACAATAAATT 137298 35 97.1 43 ..................................T GCGATTAATACCGCAGAAACAATGGCAAATGAGTTTGATGACG 137220 35 91.4 41 ....T.........T.......C............ AACAAATGCCCAAAGAAAGAATATTGCATTCCTGATGAATG 137144 35 100.0 45 ................................... TCGATATTGAAGAAGAAATCTATTCTGGTGTATATGCGCAGGTCG 137064 35 100.0 44 ................................... ACTATGCAAGTGCCTTTAACTGATGTTGTTAAATCAGCAAAGGG 136985 35 100.0 42 ................................... TTTATTTTGCTCTTTTAATAGCTCCTTTTCAGAGTTTGTAGG 136908 35 97.1 38 ...C............................... TTAACCGTATACTTTCCCTATACAACACACACTAACTA 136835 35 97.1 44 ...C............................... ACGGCAATGGTGAGCCGCCTATTGGTTACAAGCACAGAGGTAAA 136756 35 97.1 0 ...C............................... | ========== ====== ====== ====== =================================== ============================================= ================== 9 35 95.5 43 GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Left flank : TGAAGCGCTAACTCTTTATCAAACTTCTGTGTAGAGGTATTTTCACCTTCCTCAAGATCTCGACGGTCTACAGCAGCAGCAATATTATCCGCTTCGTACACAATGTATGCATAATCATCATTTTTTAGTTGAACTGCACTAAGCTCTTTCCCGTGATGATACTTCAAACAATGAGTAATACTTTGCTTTAAGCCCATATCGGAAAAATAGGGCTCAATGAAAGCAGCGCCGCGCTTAGAATGTGCATCGGTTCCCTGATTAGCTCGATACACAACTTTGCCGATATCATGAAGCAATGCACCCTTTACCAGTGCATCCCATTTACCCATCACATCGCCTCCAAACTCTACTTAAGAAATAAAAAACCTGTTTTCTTCATTATATATTCATTTCTGATTAAAACCAATAGAAAAACCATCCTATTTATACAAAAAAGCCAGTATATTCACTAAAAAGAATATACTGGCTATATTTTTGTACCTATATGAGTTTTTGACATA # Right flank : CCTGTCTTTGAAACAACAGATATTTACTGGTTCTAAAATACCAAAAACGGCGGAGATTGTAAATCCACACCAAAGGGCACTTTAGCGAGCTAAAATAATGCCGTTTAACCGCGCCACTATCACAACGGCGCAGATTTAGTTTTCTGAGAGTTAAATCTAGGTCTATTATAGCACATCACTAGCATTAATGAAAAACATATGAAAATAGAGCCACCTTATATAAGGTAGCTCTATTGAGGTTCAATATTTAACTTGTTTTTAATAATTCATCTGCTTCAGCAGTTTCGTTTATTTTCTTATACGCCTATCCTCCTTCCCCAATCTCTCCACTCTCCTACTTCTACTTTCACCGTCCAACGAATTATCTCGTTAGGTCTCTCCAGGCGATAAATAGTTCGGCCACGACTTGAGGGTTTTGGCTGAGTTTGATGCGGGCTAGCATTTTTCGCACGTAGTTACAGTGTTCTAGCATCGCTTCATTCAGTTTGTGTTTGACATGA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCATCAGGGGATTATTTAATTTAAC # Alternate repeat : GTTCCCGTCCCCATCAGGGGATTATTTAATTTAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 147966-147247 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYAA01000011.1 Veillonella parvula strain KHUD_VP2 NODE_4_length_160739_cov_481.196761, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================ ================== 147965 34 82.9 41 T...TT.A....-.T.................... CAACGTAAGGTCGGTGATCAATGGATTCTCTACAAGCAGCA 147890 35 97.1 39 .................A................. ACAAAGCTTTAAGACCAAACGTGAGGCTAAGGAATATGA 147816 34 91.4 43 ............-.T.............G...... ACAATCTTAGGGAACCTGGCATCCTACGTGAAGTAAAAAGACT A [147801] 147738 35 82.9 42 A...T.......ATCA................... AATCTATAAAACACAATGTTATAGGATTAGTATAGGTTTTGA 147661 35 88.6 44 ............ATCA................... TTGTATGAGGAATAGATTAGATTACTATTCTGAAGAGGATTTAA 147582 35 100.0 39 ................................... AAAACGCAAAAGAAATCAATACTGTAGTAGCTTTCACTG 147508 35 100.0 41 ................................... CAAAAGAGAGGTTGAGGCATTAGCTGGTGTTGAAGATGAAT 147432 35 100.0 40 ................................... TATACATGGCGTGATTTTCATATACGTAATATTCTGTATT 147357 35 100.0 41 ................................... CATAATCACCATAAATGACGATTGGTTTGTGACTTTCAATT 147281 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================ ================== 10 35 94.3 41 GTTTCCGTCCCCTAATGGGGATTATTTAATTTAAC # Left flank : AGTACACTAGGCATCATCGTTCCGCCACTATGCGGTATTATCTTAGCGGACTTTTACCTGGTTCATCGTGGAAAATATATCGATTACAACAAAGCGACTTTCAAAAAATGGAATCTAGTTCCATGGATCACATGGGCCATCGCATTGGTCTGTGTTAAATTCATACCATTCGGACTGGCTTCGCTGAACGGGATTGTAATCGGTGCCCTACTGTACGCACTCATTACGTATATTGTTAAACCTAATGTTGTTAGTGAAAGCAAAGGGTGATTATCATGGCAATTTATAAACTATCTGCTATACTAGGCACAATCATTATGGGTATCGGATCCTTTACTACCTGTCTAGCCACAAGTGAAAGCGCCATTACCCTTGGTAACGGCATGCTCGTGGTGAGCATTATTATGATGGGATTTGGATATTCGAAATGGCAACCTTAAAAAATTAATGTTTATATAAAATAAGAAAAAGCACTATCTACAAAATAATAAGATAGTGCT # Right flank : CCTGTCTTTGAAACAACAGATATTTACTGGTTCCAAAATGCAAAAAACGGCGGAGATTACAAATTAATCTCAAAAAGCACTTTAGCAAGTTAAAATAACATCGTTAAACCGCACCACTATCACAACGGCGCAGATTTAATTTATCAGAAGTTAAATTCTAGACCCATTATATCATATAAGAAAATAGATAATACAATAATAGAATCATCAATATAAAATATCAAGTCTTGAAATACTTTTACCAATATTAATGATTCTATTATTGTTAATTACACCTCTACATAGTAACAGTATTAATCGAGAGTAACTATTTATACTTAAAGTACGATACAGTCTTGTTCCTTACGTTCTCCAATACCCCAAGTATAGATATTTATAATGTCATCAAGGACATAGACTCGTAAGGAGTCCTCTATAGGGTTAATCATCTTGCTAGCTCGCCGCATCATAGCATCATATTGCTTCCTATTAAGCAATGCTTCAAACGCAGACTTTTGGAC # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTAATGGGGATTATTTAATTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //