Array 1 194524-195467 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLU01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain NCTC 1710 NODE_2_length_423246_cov_14.4846_ID_5905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194524 29 100.0 32 ............................. ACTCGTCCGCCATGTCAGTGTTAGCCGTTGAA 194585 29 100.0 32 ............................. GGACGAAAACGACGTCCGCTGCGTAAAAACCC 194646 29 100.0 32 ............................. GCGGCAAAAGACGACAAAACGCGCCCTTTCGG 194707 29 100.0 32 ............................. GTTTTTGGTTTACCGCCGATCACCGGGAAAAA 194768 29 100.0 32 ............................. TTTTACGTACAGTGACAGCTCCAGTGATTTTC 194829 29 100.0 32 ............................. CGTCACCCAAACGAATTTTTCCTCGACCTGCA 194890 29 100.0 32 ............................. AGGTTATTAATCAGGACGGGCAATTTATTGTC 194951 29 100.0 32 ............................. CAGCGGAACTTATCGCCTCGTTCAGGCGCGAC 195012 29 100.0 32 ............................. GATACTGTGTGTGTATGCGATCCAATAACCAC 195073 29 100.0 32 ............................. ACGCGAAACCTGAACCATTCAGATTGGACAAA 195134 29 100.0 32 ............................. CTGGCGAACTGTCGGAAACCGACCGCATACCC 195195 29 100.0 32 ............................. GGGCGTTATCGAGTCGCAAGCGCCCCGGAACA 195256 29 100.0 32 ............................. CCGGATCCCCTATTCCGCGATGAGTACGCAAA 195317 29 100.0 33 ............................. CCTCCTGTCTGTCCGGTCGCTCCAAGTGCTTTA 195379 29 96.6 32 ....................A........ CAAACGCGCTCGCTACCATTCCTAAAGATTCT 195440 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211599-213581 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWLU01000002.1 Salmonella enterica subsp. enterica serovar Oranienburg strain NCTC 1710 NODE_2_length_423246_cov_14.4846_ID_5905, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 211599 29 100.0 32 ............................. GGAATTATGTCCTCTAAAGACTGGCTAATCAC 211660 29 100.0 32 ............................. ATGCGGCGCCGGTGGCCGTTGATGGTGTTTGT 211721 29 96.6 32 ............................A CGTTAAAAAGTCCTGTCGGCGGTACGGTCGAC 211782 29 100.0 32 ............................. ACCGCTTATTATAACGAATTCGATCCGTTCGC 211843 29 100.0 32 ............................. CTTCTGACCAGCCCATGCACCGGCGCTGACGA 211904 29 100.0 32 ............................. CGGAGTCGCCCACCAGTCGCGAATAAACGTCA 211965 29 100.0 32 ............................. CTCATCGGCTCGACGGGCCGAACGGGCGGCGC 212026 29 100.0 32 ............................. TGATTATTACAGAGCGTCATTGCGATAGCGCT 212087 29 100.0 32 ............................. GCTGAATTAATTAAAAAATTTGACGTCAACGG 212148 29 100.0 32 ............................. AGTTATTAAACGATAGCGGGATCGACATTGAG 212209 29 100.0 32 ............................. GCTTACAACATTACCGGTTCATCATCGCTGCG 212270 29 100.0 32 ............................. ACGACAGCTATCTCGACGTGAACACAATCGCC 212331 29 100.0 32 ............................. CGTCGGTGGTCTCCGAAATCCCCCGATAAATA 212392 29 100.0 32 ............................. AAAAATATTTACAGATTAAAAAAAACTTATCC 212453 29 100.0 32 ............................. GAGTGTAGACCAAATGACCAATAGCAAACTAA 212514 29 96.6 32 ......T...................... ATGATCGCCGAAACTGGCATAAGGGGAAAACC 212575 29 100.0 32 ............................. GTCAAACAATGAAACCGAACGATTTACCCAAA 212636 29 100.0 32 ............................. CAGCGGCATGACCAGCAGCACTGTTATCGCTA 212697 29 100.0 32 ............................. TCGGCCCTCAGGATATTGAAGGCCGGACACAT 212758 29 96.6 32 .........A................... GGAAATCAGCTCTCTACGCATTACAGGCTAAA 212819 29 100.0 32 ............................. CACATCAAAGAACAGCCAGTGCCGGTAGTGCC 212880 29 100.0 32 ............................. TCAGTTTTGATAACGGGGCTGATTCTTATAAC 212941 29 100.0 32 ............................. TTGCAGGGTGATATTGTTGTAGGTGAATGGGA 213002 29 100.0 32 ............................. CGTCGATAGATATCCGGGGTCTCAATCCCGAC 213063 29 100.0 32 ............................. AAAATGAGTAAATACACATTTACTTAAAAAAG 213124 29 100.0 32 ............................. GAGCGCTTTAACATCAGGTCTGGCTGATACTC 213185 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 213246 29 100.0 32 ............................. ACCGAAAAAGAGCTTGAGGCGCTGGCGGCAAA 213307 29 100.0 33 ............................. CCGGAAGGTATTCTGATTGACTACAACGATGGC 213369 29 100.0 32 ............................. GCCGCGCAGAACGAGAAGAAGTGATGGGCTGT 213430 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 213491 29 100.0 32 ............................. GAAGTGGAGAGTCGCTGGAAAATGCTCATAAA 213552 29 93.1 0 A...........T................ | A [213578] ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //