Array 1 205217-205977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP052765.1 Pasteurella multocida strain Ban-PM7 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 205217 36 80.6 30 ...A.TT..GTGG....................... ATACATGCTAATCAATTTGATAAGGCTGGA 205283 36 100.0 30 .................................... GGTAGATAAAAGTTAAATTCATTGAGTTTA 205349 36 100.0 30 .................................... TTTGCTTTCTTCGCAAATAACGCTTTGACT 205415 36 100.0 30 .................................... ACCAAGAGTTAACTTATAGATGACCAAGAG 205481 36 100.0 30 .................................... TCAAGTTGCCAATTACAGGGACCAAAACGG 205547 36 100.0 30 .................................... AATGGCTGTAGTACTTTATACCACCTCAGC 205613 36 100.0 30 .................................... AGGAAGGTAGGCACTTCGATGACCTCAGAG 205679 36 100.0 29 .................................... CAAGATATTGGCGTACGCGAGATTCGGCA 205744 36 100.0 30 .................................... CATTTCGTGAATAAATCTTTAGGTGCAATT 205810 36 100.0 30 .................................... GATAATGAGTCATTAAGGTTGTCTAAATTG 205876 36 100.0 30 .................................... CTCGACGAATTACGTAGTGATAGCCAATAT 205942 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 98.4 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : GATGACCTTAAAAGGTTTACCCCTTGCCTATAATAAAGATATGCAAGAAGACAAAGAAGGGATTTTTGATGCCCTAGATACTTGGCAAGACTGTATCGACATGGCGGCTCTTGTGTTAGACGGCATTCAAGTCAATGTGGAACGTACCAAAGAAGCCGCTTTAAAAGGTTATTCCAATGCCACTGAACTGGCCGACTATTTGGTCGCCAAAGGCGTGCCATTCCGTGACTCTCACCATATTGTGGGCGAAACCGTTGTTTATGCTATCCAACAGCACAAAGCGCTTGAAGCACTCAGCGTTGCTGAATTTAAACAATTTAGTGATGTTGTCGAAGAAGATGTGTATCAGATCCTATCTCTGCAATCTTGTTTAGATAAACGCTGTGCCAAAGGTGGCGTATCACCACTTCGTGTTGCAGAAGCCATCGCTGAAGCGAAAGCAAGGTTGAGTTAATTCTCAAATGAAACGATTTTAATCAGCCACAAAGCGCAATAATACT # Right flank : TCTCGTGTCCCTTATCCCTTATGGCACAAGGGATAAGGGCATTTTTAATGCTCAAAAATTACTTGAATTCTCGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACTCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 961838-962645 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP052765.1 Pasteurella multocida strain Ban-PM7 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 961838 28 100.0 32 ............................ AAGTTCAAATTAAGTATATGGAAAAGACAAAC 961898 28 100.0 32 ............................ TACTAATCGTCGCTTCGAGATGAGCATTTGGT 961958 28 100.0 32 ............................ AGCTGGAGACCGCACCTTTTACACAACACCTG 962018 28 100.0 32 ............................ AGACGCGATTGTTCGAACAATATGTCGAGAAG 962078 28 100.0 32 ............................ ACGCAGAAGAAGCGGCTACCTTAATCTCTAAA 962138 28 100.0 32 ............................ AACAGAAAGACAACAACGTAGGAGAACATCAA 962198 28 100.0 32 ............................ AGGGACAACCTACCATATCACGCTGGGTCCCC 962258 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 962318 28 100.0 32 ............................ AAAAGTGGAAGAAAGCAAAATCACAGCGACAC 962378 28 100.0 32 ............................ TAGCTGTTTTGGTTGAGTTTTTTATCGGCTAC 962438 28 100.0 32 ............................ ATAGGGACGCTTGCGGTTTATGGATTTTTTAT 962498 28 100.0 32 ............................ AAGTTGTTATATTAAGCATGAAGAAATGAAAC 962558 28 96.4 32 ............G............... AGTCTGTTATTGATTTTCTCAAGCGTTATTTC C [962566] 962619 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 14 28 98.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTACACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTCCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACTTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCTCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGGTTTAG # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCGTCAATCTTATCCATACTCTCAGCAACGAGATAATACTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGAGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1480344-1481812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP052765.1 Pasteurella multocida strain Ban-PM7 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1480344 28 100.0 32 ............................ AAATAGGGAATCCGTCTGATGCGGTCCACGCT 1480404 28 100.0 32 ............................ GGTATATAGACACGACCCGATTAAACTATTGA 1480464 28 100.0 32 ............................ TATTAGGGGTTTAACGTTATCGAATGATTAAT 1480524 28 100.0 32 ............................ AAGATGCTCAGCGCTACCTTTAAACGAAATAT 1480584 28 100.0 32 ............................ AAAAATATAAACGTTTAAGAGGTCTCTCTTAA 1480644 28 100.0 32 ............................ TTAGGCAACATAAAGATAACTTAATGGTCTAA 1480704 28 100.0 32 ............................ CATGGGGATTGACGATAGGTGGAACTTTGAGG 1480764 28 100.0 32 ............................ GAAAGCCATACGTTTAATCAATGACTCAATCA 1480824 28 100.0 32 ............................ ACAATTTACAACAACACAGTTAACAACAACCA 1480884 28 100.0 32 ............................ GACAACAAGAGATTGCGTTGTTTAAGAGCTTT 1480944 28 100.0 32 ............................ AGTTAACATAAAGATAACTTAAAGAGGCCTAA 1481004 28 100.0 32 ............................ ACTTAGACGTTTTACCCCCAGTGTATAAACAT 1481064 28 100.0 32 ............................ TCTTGGTTGTTGTAAATTGTGGTTGTTAAGTG 1481124 28 100.0 32 ............................ TAATGACCACTAAAAAGGTAATTACCCATCAT 1481184 28 100.0 32 ............................ TTTCCACCGACTTCTAAAAGTAAGCGAACTGT 1481244 28 100.0 32 ............................ AGACGTGTATTAAACAGATAAAGACTAAGAAA 1481304 28 100.0 32 ............................ AATTAATAGGAAAATAAAACATGAAGCAGCAC 1481364 28 100.0 32 ............................ TAGCTACTTTCTATTAGTTGTCTTATAGCCAC 1481424 28 100.0 32 ............................ ATAATGACCACTAAAAGACAACTATTTATCGA 1481484 28 100.0 32 ............................ TTTCCCGCTAATAGGTTTACCGTAAACTAAAT 1481544 28 100.0 32 ............................ TTTTATTTTACTACCTTGCACCAAGGTGTCAG 1481604 28 100.0 33 ............................ AGTGTAGTGGCCACAACATCTAAACGGCTCATG 1481665 28 100.0 32 ............................ ACTACAGGGCACCTGTTAAAAGCTGGAAACAG 1481725 28 100.0 32 ............................ TGTTTGGTGGTTAATCATATTGTTTTGGTGTT 1481785 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : AATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACTCCGTTGCCTACCGAGTACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTAG # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGAGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGTTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //