Array 1 30300-26985 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUEJ01000017.1 Streptomyces sp. YIM 132580 Scaffold17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================== ================== 30299 28 100.0 33 ............................ GTGGAGGGGCGGCTGTGGGACCACCGGGCTCGG 30238 28 100.0 33 ............................ GCCAACCACACCACCCTCGCCGTCGCCCAGGAG 30177 28 100.0 33 ............................ TGAACTGCGGCGTCGCCCACACCACCGAGGGCG 30116 28 100.0 33 ............................ ACGACTGCGGGCTTCTCGTCTGCGGTGATGCGG 30055 28 100.0 33 ............................ GACAGGAGGTGTCCGCCGGGCTTGAGGGCGCGG 29994 28 100.0 33 ............................ TCCGCGACGGCGAGGTCTCGGCCGATCCCGGCG 29933 28 100.0 33 ............................ GTCTCCGCGATGGCGGCCATGGCCTCGGGCAGG 29872 28 100.0 33 ............................ GTCCGGGCTGGCCAGGCTCTCCCAGCCCTCCGG 29811 28 100.0 33 ............................ ATCGCGCCGCCGATCGCGCCGGCCTTGAGTGCG 29750 28 96.4 33 ...........................A GGTGGAGTCTCCCGGATGGTGGCTCCAGCGGCG 29689 28 100.0 33 ............................ GAGCCCGGTCCCTTGACCCCCTCGACCGTACCG 29628 28 100.0 33 ............................ GCCCCGACGACAGCACGGCGGGCTCGGTCGGTG 29567 28 100.0 33 ............................ CCCCTGACGTCCGGCGTAGAGCGGCCTGAAGCG 29506 28 100.0 33 ............................ CGGAGGCGTAAGCCGCGGGTCGTACACGCGTCG 29445 28 100.0 33 ............................ ACGTCCAGTGCCTCCCGGATGGGCTGTACCAAG 29384 28 100.0 32 ............................ ATCTGGGGCACCCCGGAAATGAACTACCTGCG 29324 28 100.0 33 ............................ CTCCACGAGGTCGGGCCGTGCCTCGTCGGCGCG 29263 28 100.0 33 ............................ GCCACCCCTGTGGACAGAGAACGCAAAGAGTCG 29202 28 96.4 33 ....T....................... CGTACGGGGCGGCCATGTCACATCCCCCTGCTG 29141 28 100.0 33 ............................ CTTACGCCCCGGAGTGGACACCTCTACGGGCAG 29080 28 92.9 33 ...C.......................T CCAGCTCAGCGAGTCGGAGGCCGCCGCCGAGGG 29019 28 100.0 33 ............................ TCGCTTATGCCACGGTGACGACCGCGCCGCTCG 28958 28 96.4 32 ..C......................... CCGTACTCGACGCCCGCACGAAAGACCTGGCG 28898 28 92.9 33 ..C..............A.......... GACGGTGTCGGGAAGGACGGGAAGGACGGCCGG 28837 28 92.9 33 ..C....................C.... CGGATCTGCGAGACGAGAGCTTCGAGCGTCGCG 28776 27 71.4 33 .GC.T..A..-....GC.....T..... TAGAGCCCCTTACCCTTCTCGTACACGAGATGG 28716 28 82.1 33 .GC.......A.........A....T.. GTCCGGAAGCGCACGGGGCGTGGCTACTTCCTG 28655 28 92.9 33 ..C..............A.......... TCGTGGCGCGCACGCACCGCCCTGTTGTGGTTG 28594 28 96.4 31 ..C......................... GATCCGCGAGACGAGAGCTTCGAGCGTCGCG G,C [28567,28571] 28533 27 67.9 33 .GC.T..AA.-....GC.....T..... TAGAGCCCCTTACCCTTCTCGTACACGAGATGG 28473 28 85.7 33 .GC.......A........A........ TTCGGCCGGGTCCTGTTCGAGAAGCTGGGCGAG 28412 28 96.4 33 ..C......................... AGGCCCACGTGCTTCACGTGCGGGACGTCGCGG 28351 28 96.4 33 ..C......................... AAATGTCACACGCCATGCTCGTGGCCATCCTCG 28290 28 96.4 33 ..T......................... AAGGACCGCGTGACCATCGACGCCATGCACTGG 28229 28 96.4 33 ..C......................... GTGGCCGACGCCGAGGTCGACCACAGCCAGCTG 28168 28 92.9 33 ..C..............A.......... GACGGTGTCGGGAAGGACGGGAAGGACGGCCGG 28107 28 92.9 33 ..C....................C.... CGGCAGCACCTAGGCTGACACGGCGATGCCCCG 28046 27 92.9 33 ..C....-.................... CGGTGACTGGTTGCGGCTCCGCGCGGGCCTCCG 27986 28 92.9 33 ..C..........A.............. TCCTCCGGCCACACCGCTGGCATGGTGCCGGCG 27925 28 96.4 90 ..C......................... GATCTGCGAGACGAGAGCTTCGAGCGTCGCGTGCTTCCAGCGACGAGGGGTGTTCCGTAGAGCCCCTTATCCTTCTCGTACACGAGTTGG G,C [27898,27902] 27805 28 85.7 33 .GC.......A........A........ TTCGGCCGGGTCCTGTTCGAGAAGCTGGGCGAG 27744 28 92.9 33 ..C..T...................... TAGTGGAGCGACCGATACGTGCCGCCCAGGCCG 27683 28 82.1 33 C.C.........CA...........A.. TCAATGCTGGGGAACCTAAGGAAGCTGCTGTCG 27622 28 96.4 33 ..C......................... TCCGAGCTCGGCGACAACCTCACCGTGCGGCTG 27561 28 92.9 33 ..C....G.................... CTCGCTGCCGGCCTCAAGCTGTGGCGCGACGAG 27500 28 92.9 33 ..C..................C...... CCGTGGCGCGCACGCGCCGCCCTGTTGTGGTTG 27439 28 92.9 33 ..C..............A.......... ATCCGCGACCACATCGCGGACCAGTGGGGCGTG 27378 28 96.4 33 ..C......................... TTGAGGGCCAGGGTGATCGCTCGCTCGCCTCGG 27317 28 92.9 33 ..C....................A.... TGCGCGATGCCAGCTGCGGACTCGGCCGCGCCG 27256 28 89.3 33 ..C..T..A................... ATCAGCATTGGCGACCGCATCCGCGCGTTGCGG 27195 28 92.9 33 ..C..............A.......... GCCAGTTGCAGCATCGTGCCGATCGCCTCGGGG 27134 28 89.3 33 ..C....T...............G.... TACGGCAAGGGCTACGAGGACACGTGGGCCGCG 27073 28 85.7 33 G.C..........G.........C.... ATGATGGCGAGGGTCAGTGGCTCGACCTGGCCG 27012 28 75.0 0 .GC....................AGTGA | ========== ====== ====== ====== ============================ ========================================================================================== ================== 54 28 94.0 34 TCGTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : TGCAGGCCAGCACACAGGCCGACGAGCGCCCGAGCGTGGTCCGGTTCCCCGGCCAGGCCCATCCCCTCGGCTATACGCGTCCTCTGGTTGTCCGCCAGGTACACGTCCCACAAGTGGAGCGCCATCGCGGCCGCGTCGAGAAGATGCCTCACCAGCGGGTAGGGCGGCAATGCCGGATCCAACGCACGGGACTTTCCCCACACCGACTCATCCACCACAGTCCGCCTGTGCAGCACGTCAGTTCTCTCCGCTCCACCACTCGAACCAGATCTCGCAAAGGCAGCAGTACCGCGACCGATCGCATATAAGCACCTGGCACTGACATTGATGTCGCTATCCACGTTCAGACCCTGAGCCTCGACGGGGCACCCGTGCTCGCTCTGACGACTTCGTAAGCTGCAGCTGGATAAGGTGATGACATGCGTCCGACGGAGCGTCTCACCCCCTCAAGAATGGCAAAGAAGATGCAAAGCCACTCTTGAGGCGCAGGTCAGGAAGTG # Right flank : GACGGCGTCAGGGCTGCTGGAGGTCGGGGCGGTGCCGGCGGCGGCTGCGACAGCGGCCCTGGTGGTAGCGAAGCGGGAATGGGAGAAGAAGGTTCCCGACCGGACGGTGACAGCGAGGCGGCCCCGGACGGCGAGTAGCGCTCTAGCCACGGCCCACACCCAGCGTGAAGCCCCCGACCGCAGCATGGTCGGGGGCTTCACGTACGGTGCGACGCCACCGCGGCGACGTTGCGTACCGGCCGTCAGCAGGGCTGGGCGCCCCCTTCATTGTCACGGAGAAAGGCAAGGGTGGAGTACCACAGCTCCTTGGCGCGGGTGTAGGAGTCACGCAGGCTTTCGTAGGCCGCTTGGGCATCGCGGCCGGTCTTGGCCGTCCCCCGCAGCACTCTGCAGAGCTTTTCGCCGGCCTGGCCCAGGCTCTCGAGGAAGTCGAGGCATGAGGACACCAGGGTGGGGTTGGGATTCTTACGTTGAGCCACGGTCGGTCTCCTCGGGGTGGT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 40181-43502 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUEJ01000017.1 Streptomyces sp. YIM 132580 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40181 29 100.0 32 ............................. CCATAGGAGGTGGCTTCGGGCGCCGCTTCGAC 40242 29 100.0 32 ............................. AACCGATGAGCGAGGAAGAACCCCACGTCTGC 40303 29 100.0 32 ............................. CCGACGAGGGTGCCCTTGGTGACGGCGGTTAG 40364 29 100.0 32 ............................. AGGGCAGCGGCGGGAGGGGGGAGGGGCGGCCC 40425 29 100.0 32 ............................. TTCGCGAACGTCGGCGCGGCCGCCGGCGGGTT 40486 29 100.0 32 ............................. CTGGTCGTCGTCCAGCCAGTGGCCGGCCATGT 40547 29 96.6 32 ............................A CCGGGGGGTACCGCGGCGGGATCACCGACATC 40608 29 100.0 32 ............................. TCGTACCGGCCGTCAACGAGGCGATGTCAGAC 40669 29 100.0 32 ............................. GACCTGGGAGTCGCCGACGACGAGCGGGAGGA 40730 29 100.0 32 ............................. AAAAGTCGCATCGCTTTGACGTCGGCGATCGT 40791 29 100.0 32 ............................. CCAGCTCATCTCATCGATGTGACGGTAGAGGC 40852 29 100.0 32 ............................. CACACGTGGTGGTGAAGCCATGCAGCCTCCGC 40913 29 100.0 32 ............................. CCGTGCCGGGATGCTGCCGTGAAGGTCATGCA 40974 29 100.0 32 ............................. GCGAGAGCTGGAGTGTCGAGACCGGTCTCCCG 41035 29 100.0 32 ............................. CTCCAGGTACGGGCCGGGGCTGATCGTCTCGA 41096 29 100.0 32 ............................. ATTTTCGTGCCGGGCTGGGCCATGAGCTGGTC 41157 29 100.0 32 ............................. TTGATGAACCCGGCTGCGACGCCTGCCAGTTC 41218 29 100.0 32 ............................. AACACGTGGGGCTGGGTCCGAGGCGGGTACGA 41279 29 100.0 32 ............................. CCGCGGCGAGGGCGCTCGCCCTGATCGTGGGC 41340 29 100.0 32 ............................. TAGACGGCCAGCCGCTTCGGGTCGGTCATCCG 41401 29 100.0 32 ............................. CCGGGGGCACGCCGCGCCGCCCAACCGGCCAC 41462 29 100.0 32 ............................. ATCATCGGGCGCTGCGGGGAGACGGTCAGCAG 41523 29 100.0 32 ............................. CTACCTGGCTCAGCGAAAGGAAAGGCCCATGA 41584 29 100.0 32 ............................. AAGCGGGTCCGGGAGCTGGAAGCGCAGGAGGC 41645 29 100.0 32 ............................. GTGAGCCCAGCCCCGTTGCTGACCTGCTCCAC 41706 29 100.0 32 ............................. TGGCGGTGCGCCGGAACCAGCCGGGCTTCGCG 41767 29 100.0 32 ............................. TCCTCGTACAGCGGCGGCGAGGGCGAGAACTG 41828 29 100.0 32 ............................. CGGGGGTCGCTCTGGCAGGCCCGGACCTGCGC 41889 29 100.0 32 ............................. CCGCACGGGGACGTCCGGCTGCAAGGGAAGTG 41950 29 100.0 32 ............................. CGGCTCGGACCCGGGTGGCCAATGATCAGGTG 42011 29 100.0 32 ............................. TCGATCCGCGGCTGCCGCCGGTCGGCCCGCGA 42072 29 100.0 32 ............................. CAGGGCAGGCACGGTCTCCGCAAGGTCGGGAG 42133 29 100.0 32 ............................. TCCTGGCCCGGTACGCCGACGGGCTCGACGCG 42194 29 100.0 32 ............................. GAACACGGGCGGCTCCGGTCTCACCTGGGCGG 42255 29 100.0 32 ............................. CGCGAGCGAGAGATCGCTGACGCGGTCGCGGC 42316 29 100.0 32 ............................. GCATTCACCCGCCCACGCACGACACCGGACCC 42377 29 96.6 31 ............................T CGCCCGCGCCGGCCGACTCGACTGCGGAGAC 42437 29 100.0 32 ............................. GGGGACACATGAGTTGGAACAACCAGACCCAG 42498 29 100.0 32 ............................. GGGCCGTGGAGCGACCTGAACGGCGTCGTCAT 42559 29 100.0 32 ............................. ACCCCGTAGGAAGGAGACACCCGCCCATGCCC 42620 29 100.0 32 ............................. CCGTCTGTGATGCTCGCCATGTCGGAGCGGGT 42681 29 96.6 32 ...T......................... GCGTCCGCGAGCTGCCCCACCGGCCACGGCGC 42742 29 100.0 32 ............................. ACCGGAGGCGCCTGATGGAGCCCGAGCAGATC 42803 29 100.0 32 ............................. CCGAGCGCCGCCTGAAGGCGTTCGGCCGGTAC 42864 29 100.0 32 ............................. GCCGTCGGGCAGGGGCGTGGTCATCGTGTGGG 42925 29 96.6 32 ....................C........ GTGCCTGGCTCCGAGCGGCCGAGACCAATGAC 42986 29 96.6 32 ........................C.... CGGTGCGACCTCAACGTCCGGCCGTCCAAAGG 43047 29 100.0 32 ............................. GCCGCCGAGACGGCCGCTGTCGCGCCGGTGAC 43108 29 96.6 32 ...................A......... ACCTCGGAGGCGGCGGTCACCGCGCAGCTGGA 43169 29 100.0 32 ............................. CGGGGGTGGTCCTTCACCCACCGCCCAGAGTC 43230 29 100.0 32 ............................. GATGTGCAGGACGGACTCCGCGCCAGCCTTCG 43291 29 96.6 32 ............................C CACTTCGAGGAGGCATGGGCCCGGCACACCGG 43352 29 93.1 32 .............GT.............. TCCGGATCAAGGCCGCACTCCACGGCCGACCG 43413 29 96.6 32 .......T..................... TAGCCGATCTGCGTGAGGGTGGCGCTGATGTC 43474 29 93.1 0 ...T...T..................... | ========== ====== ====== ====== ============================= ================================ ================== 55 29 99.3 32 GTGCTCCCCGCCGACGCGGGGGTGTTCCG # Left flank : ACTTCCGCGCATCGTCCGGGACGTCCAGAACCTCCTGACGCCACGCTCCATGGATGCCACCGACGAAGACGAGCCACAGGAGAAGCGCGACGTCCAGCTGGTCCACCTCTGGGACCCCAAGGCCGGCGCCCTTCCCGCAGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCATGCTCGTGATCGCCACCACGGCCGTTCCTGATCACCTTCGGGGAGCGCTCAGCCGTTGGACCAGTGAGGTCGTTCCCGGCATCTTCGTCGGGAGCGTCTCGGCCCGCGTCCGCGACCAGCTTTGGCAAGCCGTCACCGACACCGTGGGCAACGGCGCCGCCGTCCTTGTCCACCCCGCCCCCACCGAACAGGGCTACGCCATCCGAACCGCCGGCACCCGCCGCCGCGTCCCCGCCGAATTCGACGGCCTTACCCTGATCCGTATGACCGCTCCAAAGTTAAAGGAAATGCAAAGCCCTTCTTAAGGTGCAGGTCAGGAAGT # Right flank : GGCCGAGTGCCCTGTCCTTTCGCCTCTCAGCTGCGGCGTACGTACGGTGAAATCTGCCTCTGAACTACGTGGCGGGTTCGTACTCGACGGTCGAGTCGGCGCACGGCTCGGCGAGTTCGAGGAGTGCCGTCTGCTCGGCCTCGTCCGCGCTCAGGTCCCAGCGGAGCTTCGTGGCGGTCCAGTCGACCAGGTACGTGCACGTGGCGGATTCGGCGGGCGGCATCCACGCGGCCGGGTCCTTGTCGGCCTTCGACCGGTTCGTCTTCGCGGTCACCGCCACCAGGGAGCGTTCGGCGTCGAGGTCGTTGGCATAGGCCTCGCGGCGTTCGGGCGTCCAGTCGTGGGCGCAGCTGTCCCAGGCTTCGGCGAGCGGGACCATGTGGTCGATGTCGAGCTTCTTCGTGTCGGTGACCTCGACCTCGTCGTAGTACGACGTCCAGCTGCCGCCGCTTAGCGTGCACCGGGCGCCCTGCTTCGGAGCGGTGACTGCTTCGGCGAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //