Array 1 525667-520959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043540.1 Xanthomonas translucens pv. undulosa strain LW16 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 525666 31 100.0 35 ............................... ACCTCACCAGCGGATTCCTATGGCCAGTACCTCTA 525600 31 100.0 33 ............................... CAGGCCGCGCACCAGCCCGTCGCGGGTGGCATC 525536 31 100.0 33 ............................... TTTCGCTCCTTAATGGTGTCGCTCATCTTGCGG 525472 31 100.0 36 ............................... TGCATCCAGTACGCCGACAACTCTGCCTCGCCAGGC 525405 31 100.0 36 ............................... AGTTCCTGATGCAGAATCCTCTGTGTGTGTACTGTG 525338 31 100.0 34 ............................... CAATGAGGACCGCCGCCCACGACATGCCACTCCC 525273 31 100.0 35 ............................... TTGCGATCCTGGACGTTCATTTTTTGCCTCGGTGT 525207 31 100.0 35 ............................... TCGCTGGGTGCGCAGATCTTCGATCGCTGGGAATC 525141 31 100.0 34 ............................... TCGAGGCGCAAGGACATAGCTTCCAAACTCACTG 525076 31 100.0 35 ............................... ACTGATCCCACACCAACCGACACCGAGGCAAAAAA 525010 31 100.0 33 ............................... AAGGTGGTCTACGTCAACATGCCAGGCACGGCC 524946 31 100.0 35 ............................... AGCGTGAACAGGCCATCCTTTCCTGGGTCCTTGCC 524880 31 100.0 34 ............................... ACCATTTGAGTACCCATGGCCGGTCGCCGTAAGC 524815 31 100.0 35 ............................... CTGCCAGGTCTAGCAAGATGGTGGAGAATACAGGG 524749 31 100.0 35 ............................... AAGTTCGGTGAGTTCCGGATTGGTGGGTGGCGCTG 524683 31 100.0 34 ............................... CAAACTCACTGATCTGGAGGCAGCCGGCGACCTA 524618 31 100.0 34 ............................... CCATATGCCGCAGCAGACAATTCCGCTGTTCGGG 524553 31 100.0 34 ............................... TCATGATCCACAACACTTGGCTGACGTACTCGGG 524488 31 100.0 37 ............................... CTTCGACCGGGAGCTCCACAGGGGCCGCCGGCGGCGG 524420 31 100.0 34 ............................... TACGAGTACGTCGCCCGCTTGATGTTCAACCCAC 524355 31 100.0 34 ............................... TATGGCACCCGTAGCGAGGCGGTGGGTATGTGGG 524290 31 100.0 36 ............................... CGCTGCGACATTGACGCAGAGAAGCGAGTGGCGCTT 524223 31 100.0 34 ............................... CCCGTATTACTGCGTTTCGAAGCGCACGTGATTA 524158 31 100.0 36 ............................... AACCTGCCGGACATGCGCGGCGAGTTTATCCGCGGA 524091 31 100.0 38 ............................... ATTTCGTCGTCCCGTGCTGTTGGTGTGGGAGTAGAGTC 524022 31 100.0 35 ............................... CCTTCCCCGATGATTGGCGCAACAGTTCGCCCATC 523956 31 100.0 34 ............................... GACGTATTGCGCTGGTGGTCGAAATCGATCACCA 523891 31 100.0 35 ............................... AACCCGTTCGCCAAGGACGGCCGCACCCATCGCTA 523825 31 100.0 36 ............................... GCGAACTGCTCGAAGTGCCGACGGAAGGCGATATCC 523758 31 100.0 35 ............................... AAGTATCGTCACGAACCAGCTGCGTGCTTGTAGGT 523692 31 100.0 35 ............................... CTGGAAGGCTGCGTCATCAAGCGCCTGACCCGCCA 523626 31 100.0 35 ............................... CAGGCATGGGCCTGACGCAGGTAACCCGCGCCGAG 523560 31 100.0 34 ............................... GCGATCCAGACCCCGCGAATCGCGGTCTGGCTCA 523495 31 100.0 35 ............................... TTGCTGTCGGCGGGGTTACTCCTCACCCGTAGCGC 523429 31 100.0 34 ............................... GGCGAAGATCGCGGGGGGTAAATTTCGGGATGCC 523364 31 100.0 35 ............................... AGTCAGTGCATTCCGGATTTCGTTTTGAATCGCGT 523298 31 100.0 34 ............................... TTTTGCATGAGCCGCGGCATGTAGTCCGCGGACG 523233 31 100.0 34 ............................... CAGACCGGCGTGCACACTGCGGGCATCGGCTACG 523168 31 100.0 36 ............................... AACGCAGCCGGCATCAAGGCTGCGCACCTGGACGGC 523101 31 100.0 35 ............................... TCTTAATTGTTAAGTTAATTTTTGAGGCGGGGCGA 523035 31 100.0 34 ............................... CGGTGTGCTGGCGCTGGCGTCACACACCGGATGG 522970 31 100.0 34 ............................... CTACGGCCTTCGCACGGCCGCGTGGTCGAAGTGC 522905 31 100.0 36 ............................... TTTTCCCAAATCGGCTGGATTCCAAGCGATTTCGGG 522838 31 100.0 36 ............................... AGTATTGCAAAGGTAATGCGGCGGACGACGGAACCG 522771 31 100.0 35 ............................... CGGCGGCGGGGTACTCGGCCCGCTGACGAGTTTCC 522705 31 100.0 35 ............................... TACTGCGCGGCGATCCCTGTGAAAACGGGCGGGTC 522639 31 100.0 35 ............................... CCGTCCAGGTGCGCAGCTTTAATGCCGGCCGAGCT 522573 31 100.0 36 ............................... ATGACCGCGTGGATCGCGCGTTTGCTTGGAGCGACT 522506 31 100.0 35 ............................... AGCAGCGAATAGTTACTCAGGTCTTTCGGGTCCAT 522440 31 100.0 36 ............................... AGGCGCCACACAGCAAGATATAGCCCGTGAGTTCAG 522373 31 100.0 36 ............................... CTGGCCCTGATCGCGCAACGCCAGCCGAAGGAGAGC 522306 31 100.0 34 ............................... TTTTTGTCCGGATACCAGTTGCGCGGACTGCAAG 522241 31 100.0 35 ............................... ATGGGAAGGCGATGGAATCCTACCCGGCCATGGTC 522175 31 100.0 34 ............................... TTGACCATGCCGCGAAGCATGGCCTGATCCAGCC 522110 31 100.0 35 ............................... TACAGCGCCCAGCGGCTGGCCAAGCTGCAGCGCGC 522044 31 100.0 36 ............................... GCCTATGCCGTCGTTGCTGGATGGTCAGTGCAGGCC 521977 31 100.0 35 ............................... TTCTACAACCTGTTCCTGATGCTGGAATCGCTCGG 521911 31 100.0 35 ............................... TTTCTCGGCGGCGATCACTGCCTGGCTAAACTTCG 521845 31 100.0 36 ............................... GGGAAACTCGTCAGCGGGCCGAGTACCCCGCCGCCG 521778 31 100.0 35 ............................... TCTGCACTGGCGTCGATCCAGGCGCGGACCTCATC 521712 31 100.0 35 ............................... TCGATGCTCATATTCTTACTCCTCGTTTCTGCCCG 521646 31 100.0 34 ............................... AAGACCCTGAAGATCGTTGACGCCCCGGGCGGCC 521581 31 100.0 35 ............................... CTGTTCGGTCGTACGATGCTGCCCACCTGCAACAG 521515 31 100.0 35 ............................... GGCTTCGCGCCGCTGGTGCCGACCGTTTCGCGCCT 521449 31 100.0 33 ............................... AGCGCCGGGAAAGTGGTTTTGACGACTGGGGAT 521385 31 100.0 36 ............................... ACGGAGGCGCTGCTAGCAAGCATGCGCATGCCGCTG 521318 31 96.8 35 ..A............................ AGAAATATGTCGGAAGTGTCCATTGACGCGGTTGC 521252 31 100.0 34 ............................... TCAGCCTGCGTTGCTTCCCGCAAGTTAGAGACCC 521187 31 100.0 35 ............................... TTTGGCGTCAGGTTGAGCACGAACTTGTCTGGGTC 521121 31 100.0 34 ............................... TGGTGCGACTCTATCAGCTGCCCCACTCATCAGG 521056 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 520990 31 87.1 0 ......CG.......C.........C..... | G [520963] ========== ====== ====== ====== =============================== ====================================== ================== 72 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTTTGGTCAGCTACGATGTCAGCACGAGCTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //