Array 1 482377-483600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLE010000003.1 Listeria seeligeri strain FSL W9-0483 NODE_3_length_488999_cov_77.709109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 482377 36 100.0 30 .................................... AAGCGAAAGCAACGAATAAATATAGTCAAA 482443 36 100.0 30 .................................... GAGATGAAATTACATGCTGACTATCGCACG 482509 36 100.0 30 .................................... TACTTTACCAGTTGATGTTAAGAAAATGAT 482575 36 100.0 30 .................................... ATATTCCTAATTTTGTAGTAGATAAAGCTG 482641 36 100.0 30 .................................... CCAAAAAAATGTATGAAACATATCATGAGT 482707 36 100.0 30 .................................... TAGAAGGTGCTCCTGTTTGATTACCTCTGA 482773 36 100.0 30 .................................... TTTTAAACTTACTTTTGTACCAAGCTCGTT 482839 36 100.0 30 .................................... CCCACCGCGTCAATTGCGGAGTTTAGTACT 482905 36 100.0 30 .................................... CGAAACGACACGAAAACTAACCAAAACAGG 482971 36 100.0 30 .................................... TCTCCCAGATAAAATCGCCACGTTCTATGT 483037 36 100.0 30 .................................... CGCAAGTGGCTGTTTTTGCGAATGTTTGTC 483103 36 100.0 30 .................................... AAGCGGCGAACGATAAAGCTAAAAAAGATT 483169 36 100.0 30 .................................... TTGTTCCTGGTTAAAATACACAACGTTATC 483235 36 100.0 30 .................................... TTCCTGTAAAAAATAATCACCTGCAATCAA 483301 36 100.0 30 .................................... CTGCTTGTACCAATCTCTCTCTGAAGCGTG 483367 36 100.0 30 .................................... ATCCGCAACGGAGCTTATCACGGGACAATC 483433 36 100.0 30 .................................... ATCGTCTTTATCAAAGATACCAGGTAACGA 483499 36 100.0 30 .................................... TAAAAATAATAATGAATTAACGGTTATTGA 483565 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAAGAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCACCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACGTAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 172233-170971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLE010000004.1 Listeria seeligeri strain FSL W9-0483 NODE_4_length_410537_cov_67.850278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 172232 29 100.0 37 ............................. TTCCAGAGTGATAGCATTTCAAACTGAAAGGAGTTGA 172166 29 100.0 37 ............................. TTAAAATAAACATTGAGAAAACCTAATCCCCCATCGA 172100 29 100.0 34 ............................. TTAGAAGGATTAGATTTAACTAAAGAAGAACGTG 172037 29 100.0 36 ............................. AACCTTATCTAGATGGGCTAGCGGAATGGAGAGAAG 171972 29 100.0 34 ............................. AATGGGAGATAATGTATATGGGTAAAAAGTCCTT 171909 29 100.0 35 ............................. CATTTTAAGCTAATTTGACAATATATCTGTATAAA 171845 29 100.0 36 ............................. ATCTGTCATTTTCATGTGTTTTAACAGGTTGCAACG 171780 29 96.6 35 T............................ CTAGTTAAATCTTTGGGTAAAAAAATATCATCTGG 171716 29 96.6 40 T............................ TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 171647 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGTACGGTGAACGG 171582 29 93.1 35 T...............A............ CAATATGTGGCGGATTGGATTGTCGATAGTAAACG 171518 29 96.6 34 T............................ GTGATTGAAGTTCTTCCTAAGTGTTCTACAACAC 171455 29 100.0 36 ............................. ACAGGAAAGGGAGAAACGTCATTAGCTGGGCTAAAG 171390 29 96.6 35 ........................C.... AAAAATTTAGTAACTGCGCATGATAATGCGGTCAA 171326 29 100.0 37 ............................. ACCTGAAACAGCGAGCGGGACAACGGGAAATTTCACC 171260 29 100.0 36 ............................. GAAAGTGTAGAAAATGACGACTACAAGGGCTGGGGA 171195 29 100.0 36 ............................. ATGCTTACCATACAACCCGCCATAGCCGTTTTTTCC 171130 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 171065 29 100.0 37 ............................. GTGGTCACAGCGTTCTTGTTGCCAGCTGGTGAGCCCC 170999 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 20 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGACGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGGG # Right flank : CCACCCATCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 182353-180842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLE010000004.1 Listeria seeligeri strain FSL W9-0483 NODE_4_length_410537_cov_67.850278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 182352 29 100.0 35 ............................. GAGATTGACAAATACCGTTTCACTAAACTAGCACA 182288 29 100.0 34 ............................. CACATCTCCGGAAACGATGCTGAAACTGGGATAT 182225 29 100.0 35 ............................. CAACTCGGAAAAATTTCACTCGATAAGTATGGGGA 182161 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTCCTTTCACTTTTAA 182097 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 182032 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 181968 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 181905 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 181841 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 181777 29 100.0 37 ............................. TATTTATAACGCCAATTACCTTCTTCAGTCGCTACAG 181711 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 181646 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 181581 29 100.0 35 ............................. TTAGATCAAATAGATTCAATTCCTCTGATGGCACC 181517 29 100.0 34 ............................. GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 181454 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 181390 29 100.0 37 ............................. GTTTTAGTCAGCAATGCATTAATTACTTTCATACTCG 181324 29 100.0 36 ............................. CAGATACATCTACAACACGCAAAAGCGTCCCAACAG 181259 29 100.0 37 ............................. TAGTCATCATCTAGTTTTATTCCCATCACCACATATC 181193 29 100.0 35 ............................. AATCGAACGGATATTCCAATACTCGAATCGCCTTG 181129 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 181064 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTAGGTTC 180999 29 100.0 35 ............................. AACGATGAAAAAGCACAAATAGAAGCATTAAAATC 180935 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 180871 29 86.2 0 ........C....C..A...........G | T [180844] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAAGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGCGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTGCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGAATTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 188938-188587 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLE010000004.1 Listeria seeligeri strain FSL W9-0483 NODE_4_length_410537_cov_67.850278, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 188937 29 100.0 37 ............................. TTTTTTACTCCGCTGGCATCAACAACAATATCCGCTC 188871 29 100.0 34 ............................. ATTGAGCGCCTTAATCAACTCTTCGGGTGTTACT 188808 29 100.0 34 ............................. AAGGTACATATTTGCTTTTAAAAAATGGATTATC 188745 29 100.0 36 ............................. TACTTTTAATTTTCGGTCCTGTAAGCCTACTTTTAT 188680 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 188615 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCACTCCGTTATGGCTGGAAACGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGGGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //