Array 1 2511-1166 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTU01000037.1 Phocaeicola vulgatus strain AF26-3BH AF26-3BH.Scaf37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2510 33 97.0 34 ................................A GAATATTCTTGCTCAGATGCATCCTACTCAATCT 2443 33 100.0 34 ................................. CCGCTGGGTCTTATTGTTATTGTGGATTCAATTA 2376 33 97.0 34 ................................A TGGCCAAAATGAATATCTCCCGAAATGCCTATAG 2309 33 97.0 32 ................................G TACGCAACTAGGGGCTTCGCTTAATTAACAAG 2244 33 97.0 32 ................................G ATTAAAGAGGAAAATGATTTTGTCGAACTTAA 2179 33 100.0 32 ................................. TTGAGAAAGGCTGTGATTTCGTGGAAGACGAC 2114 33 100.0 32 ................................. TAAGAACATTGGTATTCTTAGAATCCCATAAT 2049 33 100.0 33 ................................. TCTCAGGTCAATTTGGTTAATCCTGCTTCTGGA 1983 33 97.0 32 ................................G AGATAAACGGATTAAGACCACGAGAAATCATC 1918 33 97.0 32 ................................A GTTGCACGGATCGAGAGAGCGGAAAGATCAGA 1853 33 100.0 32 ................................. CAGACAGTCAATATGTTGCCTCTGCTAACTTA 1788 33 100.0 33 ................................. ATGGCCCAGGCTCGTGCCGCTATGATTAATGCT 1722 33 100.0 33 ................................. CTATGGGACTCGAAAAATACGAATGTTGTTAAG 1656 33 97.0 33 ................................G ATTAAAGAAGAAAATAATTTTGTTGAGCTTAAA 1590 33 100.0 32 ................................. TCCGTAACTGGCATTTGCCTGGCTTCGGTTCT 1525 33 100.0 32 ................................. TGGTGGTATTGTTGCTGCTGGCGCCTCTCTTG 1460 33 100.0 32 ................................. TATTGAATTCTGAACAAAAGATTGTTGCTGCA 1395 33 97.0 31 ................................A TATTCTGAACACATTGCAAATGTACAAAAAG 1331 33 100.0 32 ................................. GGGAAGCTTGCGCCGGATACATTATGGACGTT 1266 33 97.0 33 ................................A ATGACGAGGTGAATACGTGTATAGACAACCATA 1200 33 90.9 0 ....................A.........G.A | TA [1177] ========== ====== ====== ====== ================================= ================================== ================== 21 33 98.3 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTCCAGAGTAAATATATTATATTTTTACTATACTATCCCTTGTTGTTTATTTGTTATATTGTTGGTTATTAATGTATTATTATCTGTTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64196-61390 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTU01000012.1 Phocaeicola vulgatus strain AF26-3BH AF26-3BH.Scaf12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 64195 47 97.9 30 ...A........................................... TCTTATAAGTCAGAGTATGTCCTGATTGAG 64118 47 100.0 29 ............................................... GATCAAAAGGGATCGTACCCCTGACTTGT 64042 47 100.0 30 ............................................... CCAATGTTGAAACAAAAACCAATCTTCTTA 63965 47 100.0 30 ............................................... TGCTCGTAATCCCAAACACCACTTAACAGC 63888 47 100.0 30 ............................................... ACCGCAAGCGATGCGGTACTCGTTGTTTTT 63811 47 100.0 30 ............................................... ACCGTAAACGAATTGATTGAACATTTTAAA 63734 47 100.0 29 ............................................... TTAATATAATTCTGGACATCGACGTAATT 63658 47 100.0 29 ............................................... GATTCAATACTTTCACACCTCCGATGATA 63582 47 100.0 30 ............................................... CAATTTGCGCATAAGGGTTTTCGTCTTCCA 63505 47 100.0 30 ............................................... CGACCAGCAATTTTGTCTTTAACTGAGATA 63428 47 100.0 30 ............................................... CGACCAGCAATTTTGTCTTTAACTGAGATA 63351 47 100.0 30 ............................................... CGACCAGCAATTTTGTCTTTAACTGAGATA 63274 47 100.0 29 ............................................... TATCAATCACTTGGCGACGATTACGAGGA 63198 47 100.0 29 ............................................... GGAAGCAAGTTTACGAGCATAGAAGTACC 63122 47 100.0 29 ............................................... TCCAAGTAAACGGCGATACTTCTCCTGGT 63046 47 100.0 29 ............................................... TAAATCGCAATAAAGAGAAGCCACATGAT 62970 47 100.0 30 ............................................... GGCTTTCAGATGGAACATTGGTTGAAGATA 62893 47 100.0 30 ............................................... AAAAAGCATTAGAATTAGGTGACAGTATTA 62816 47 100.0 30 ............................................... ACGGCCTTCGTAATACTATAGATTATGGTA 62739 47 100.0 30 ............................................... AGTACCACTAAATGCAACACTTTCCGGAGT 62662 47 100.0 30 ............................................... ATTTGTTCAAGACAGCCTGAGCGTCAGATT 62585 47 100.0 30 ............................................... CAGATCTCATTGCAGATGTGTGAGATGTAT 62508 47 100.0 29 ............................................... CATTGTTATTAGAGACTTAATATGAAATT 62432 47 100.0 29 ............................................... ATATAGATAATAGTTTGATCTCGCAATAG 62356 47 100.0 29 ............................................... TATAATATATTTCTAGCTGTTTACTTTAA 62280 47 100.0 30 ............................................... GTCTAAAGGATGAAAATCACTCATAATTAA 62203 47 100.0 30 ............................................... TGCGCTTCTTGTGCAGAAGTCAGACGACCT 62126 47 100.0 31 ............................................... TATTGAGCCTCGGTCAAAGAACCTTGTGCAT 62048 47 100.0 30 ............................................... AATTCTCCAATTCTGTAACAGCCATCATTT 61971 47 100.0 29 ............................................... CTGAGGGAAGTCAGAAACAGACGTACATA 61895 47 100.0 29 ............................................... GAATCCACAATAACAATAAGGCCCAGCGA 61819 47 100.0 30 ............................................... TTGGCGCTTGTTATCGTAAAATGCAAGTTA 61742 47 100.0 29 ............................................... CTCAGGAGTACGACGAGCGCTTGTTATCG 61666 47 100.0 29 ............................................... ACACCCGCTGCCCGCGTAGGGCCTGATCG 61590 47 100.0 30 ............................................... CGTACGACGAAGCTCCACCTGCGGAACGTT 61513 47 100.0 30 ............................................... AGGGTTTCATTTACAAAAACATACGTTCGG 61436 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 37 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAACTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : AGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //