Array 1 627-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQM01000010.1 Salmonella enterica strain CVM 43769 43769_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 626 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 565 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 504 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 443 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 382 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 320 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 217 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 156 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 95 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 34 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================================================== ================== 10 29 100.0 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTGACG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18740-16759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQM01000010.1 Salmonella enterica strain CVM 43769 43769_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18739 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 18678 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 18617 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 18556 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 18495 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 18434 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 18373 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 18312 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 18251 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 18190 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 18129 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 18068 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 18007 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 17946 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 17885 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 17824 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 17763 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 17702 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17641 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17580 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17519 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17458 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17397 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17336 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 17274 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17213 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17152 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17091 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17030 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 16969 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 16908 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 16847 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16786 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //