Array 1 36745-36116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHNZ01000045.1 Escherichia coli O81:NM str. 02-3012 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36744 28 100.0 32 ............................ GCTCGCCGCAAGTCGATGACCGAGCGTAGCGA 36684 28 100.0 32 ............................ TGTGGTGATAAAGGGGAAGCGTGCGTGGCCAT 36624 28 100.0 32 ............................ TGTGTGAGTCTTCGCATTAAAAATCGTCCTGA 36564 28 100.0 32 ............................ AGGGTCTGATGCGATTTCCCGAAAGAAATATA 36504 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 36444 28 100.0 32 ............................ GGAAGCTACATTGAGCACGCACGCTCAATATT 36384 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 36324 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 36264 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 36203 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 36143 27 92.9 0 .......................C-... | T [36124] ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46664-45804 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHNZ01000045.1 Escherichia coli O81:NM str. 02-3012 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46663 28 100.0 32 ............................ ATGCCCTGGCGGGCATTTAAACCCGTTTCGTG 46603 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 46543 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 46483 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 46423 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 46363 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 46302 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 46242 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 46182 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 46122 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 46061 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 46001 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 45941 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 45881 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [45834] 45833 28 78.6 0 CC..................T...C.CT | C,A [45807,45810] ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.6 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //