Array 1 43058-44245 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKUL01000026.1 Escherichia coli strain MOD1-EC5934 MOD1-EC5934_26_length_61948_cov_35.736, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43058 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 43119 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 43180 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 43241 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 43302 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 43363 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 43424 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 43485 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 43546 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 43607 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 43668 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 43729 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 43790 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 43851 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 43912 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 43973 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 44034 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 44095 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 44156 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 44217 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80-962 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKUL01000067.1 Escherichia coli strain MOD1-EC5934 MOD1-EC5934_67_length_18333_cov_36.4674, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 141 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 202 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 263 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 324 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 385 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 446 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 507 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 568 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 629 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 690 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 751 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 812 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 873 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 934 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGGGG # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 326-114 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKUL01000089.1 Escherichia coli strain MOD1-EC5934 MOD1-EC5934_89_length_8638_cov_52.9572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 264 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 203 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 142 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGGTTACGCCTGCACAGAGTACAATGCGTGGGGGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //