Array 1 144060-142440 **** Predicted by CRISPRDetect 2.4 *** >NZ_LKGP01000059.1 Lacticaseibacillus paracasei strain FAM8407 FAM8407_scaffold_0059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 144059 36 100.0 30 .................................... TTAGGTGGTAATGACTATGCCTAATCAATA 143993 36 100.0 30 .................................... GCTTTGAATTTTCTGTGAGCATAACGGCTT 143927 36 100.0 30 .................................... CAATTCCAGCCATATTTGCGCCAAGAATTC 143861 36 100.0 30 .................................... CACTAGACCAAGACACTTTTGCGCATGCAA 143795 36 100.0 30 .................................... TCAAGTTCAGCCAACGTTGTGCTGCGTGTT 143729 36 100.0 30 .................................... CCAAATTGGTTAGCACCGCTTAAAGACGAA 143663 36 100.0 30 .................................... TATCAGAGGCTTATCCATTAAACAACTGGC 143597 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 143531 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 143465 36 100.0 30 .................................... TCGTAGCGGCTAACACGCTTATGGCTGACA 143399 36 100.0 30 .................................... GATCGTTGAAGAAAGGCTGATCAATATGTT 143333 36 100.0 30 .................................... ACATGAATTTAGATGCGCGTATTAGGATTT 143267 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 143201 36 100.0 30 .................................... CTTTTATTCGGTTCACGTTGATATTTCAAA 143135 36 100.0 30 .................................... GATGAACTTTATGACTTGATCCTTCACGCC 143069 36 100.0 30 .................................... CCTAGGTCAAACGAATCTAGTCTACAACAG 143003 36 100.0 30 .................................... CTACTTCAAAGTGAAGCCCCCCTACCAAAA 142937 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 142871 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 142805 36 100.0 30 .................................... TTTACAGAAACACCACCTAACTTTGCTGAT 142739 36 100.0 30 .................................... GACCAAAGCATTGCAAGATCTGTCTGATGA 142673 36 100.0 30 .................................... CAAAAACAGATTTGATCGCTTCGCCAAAAT 142607 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 142541 36 100.0 30 .................................... TGACGATTTGGTGTTATCCAAAAGCCGACA 142475 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.3 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //