Array 1 1339694-1343322 **** Predicted by CRISPRDetect 2.4 *** >NC_015966.1 Rhodothermus marinus SG0.5JP17-172, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1339694 30 100.0 35 .............................. TGAAGCACGCAAAACTCCTTCTGTTGCTGGCCGCC 1339759 30 100.0 37 .............................. TTGACAATGCCGATGTGGGCGCGCTGGCCTACATCAG 1339826 30 100.0 36 .............................. GCAGGAACACCATGCTGCGGAGTGAGCGGATATTGG 1339892 30 100.0 38 .............................. ACAGGAAGGCAAGCTGACTGTCGCGATCCTGCAGGCCT 1339960 30 100.0 37 .............................. GGAGCACAGTTTTGTGCAAGCACCCGGCATATACTTC 1340027 30 100.0 39 .............................. GGCGTACCGCTGTCGCCGATCCTGTTGCGTGAGCGCATC 1340096 30 100.0 36 .............................. TGTACGACAAACGGAACTTGGCCCTCACGGCGAGCG 1340162 30 100.0 37 .............................. GACGGCGGCAAAGAAAGAATGACATTGCCGCCCTCAT 1340229 30 100.0 36 .............................. GGGTAGAGGCGCTCGTCCTCGTCCAGGACATAGACG 1340295 30 100.0 36 .............................. GTACAGATATTTCAGAGTCCACGATCCACAGATAAT 1340361 30 100.0 36 .............................. ATTGAAGAGCATCGGCGAGATGCCGTACGTGTCGGC 1340427 30 100.0 43 .............................. GCACGTAAGAGGCATGAGAAAAGGAAGTATAACCTTCAGGCCA 1340500 30 100.0 37 .............................. CGTGTATGCCTACGAGGAGCTGAACTCGTACTGGCAG 1340567 30 100.0 35 .............................. CTCCGAAAGAAGTTACTTCCTCAGTACAAAGAGCA 1340632 30 100.0 37 .............................. CTGGCCCTCGATCTGTACGCTTGGCTTTCGTATCGGG 1340699 30 100.0 37 .............................. AATAGCTGGTACGGGGAACTGAACTTGGCGAGGATGC 1340766 30 100.0 38 .............................. TACAGCTCCGACTGCAGCACGGCCGACAACCGCGCCCG 1340834 30 100.0 35 .............................. CTTGGAAAAAGTCTCGGTGGGTGATCGGCGCGTAA 1340899 30 100.0 38 .............................. CCTGAAAGCGCAAGGCCAGCTTCGCTACTGGCGCAACA 1340967 30 100.0 35 .............................. TTGCATAACCTAAAAAATGAACGCTATCCTTTAGC 1341032 30 100.0 37 .............................. GGAAATACTGTTTGTTCAACTTTCTGGCAAATTGCTC 1341099 30 100.0 35 .............................. GCGGTAATTACATCTGGATCGATAATGGCTTTTAC 1341164 30 100.0 39 .............................. TATATTTCAACAACCACCCCTCTTTCTGAAGGGAATCCA 1341233 30 100.0 35 .............................. GATAGGGTGGCAACACCTCGCGGTAATCCTGCGGG 1341298 30 100.0 37 .............................. GTTGCCCGAGCCGGGCTGTTTCTTTTCACTCGTTGTG 1341365 30 100.0 36 .............................. GCGCGTAATGCCGGGCTGGGTGTACATGTCTCCCGA 1341431 30 100.0 37 .............................. TTCGCCTTCCGTATGCCGCACCAGACAACGGCTTGCG 1341498 30 100.0 37 .............................. TGCAGCGCCTCTACGGCTGGTCGTGGCGCAAAGCGCG 1341565 30 100.0 37 .............................. ACGTCGCCGCCATCCTGGCCGCCTACCGGACGATCAA 1341632 30 100.0 37 .............................. GGCGAAAACTATCGTCATCTGGGGTGGCGCTTCCCGC 1341699 30 100.0 37 .............................. TTACGTTCAACGTCACGCGAAAATCCACGGTCTTCCA 1341766 30 100.0 36 .............................. AATCATGGCGTTGGATTACGCGCAGCGCGTCGTCGC 1341832 30 100.0 38 .............................. CTGGACCGAGACGCCGACCGACCAGCGATTGAAGGCCG 1341900 30 100.0 38 .............................. GTGACGGGCGCCATCGAATGGCTTGCCCAGGATGGCGT 1341968 30 100.0 35 .............................. ACCGCCCGCGCGTGGCGATCAGGTGCTCGGCCTCC 1342033 30 100.0 37 .............................. CGAAAAATACGATAGCTTTCATGATGCCCTCCTTCGG 1342100 30 100.0 34 .............................. ATTGGATTTTGTCGGCCAGCGGTCCTTCGGTAGA 1342164 30 100.0 36 .............................. GCCAAAGCCCAAGGTCGACTGTCTAAAATCGCAGAG 1342230 30 100.0 38 .............................. GGCAGAGACGATGAAAAAGGCCGTGGACTACGAGTTCA 1342298 30 100.0 35 .............................. GAAGTGACCGAGAGCCGGATCGTCACCACTCTCAA 1342363 30 100.0 38 .............................. ATCTTCGATCTTATCGACGAGACGGCGCCGGTGAACTG 1342431 30 100.0 37 .............................. CTCTGCGGCTGGTAGGGGACAGGCAGCGCCACACGCT 1342498 30 100.0 35 .............................. ATCTGAAAAGCACGGGCAATCTGCTGGTCGACGTA 1342563 30 100.0 38 .............................. TCGGAACGCGGGCGTAATCGACCACCTCAGCCCCGACC 1342631 30 100.0 36 .............................. CGAAGCGGTAGCCGCGCCCGCTGGCGATCACCTCGG 1342697 30 100.0 35 .............................. TATGTTGGCCTCCGACTGGCCCACGAGCGACCCTT 1342762 30 100.0 35 .............................. AGGTCGCGAACAAGCTCTTGCGCAATGATGGTCGC 1342827 30 100.0 37 .............................. AGCTGCTTTGCAGCAGCTAGGACGATGGACGACACAA 1342894 30 100.0 36 .............................. ATCAGGTGGAGGATTCGATCGAGGGGTGGTGCTCGG 1342960 30 100.0 36 .............................. TGATCGATGCGACGCGCAAGGGCCACCCGCTGCACA 1343026 30 96.7 37 ..................A........... GCAGGGACGCGCGGCGCTCAAGTACCAGCGAAGGCCG 1343093 30 96.7 38 ..................A........... ACGACTTGGCACGCCTGCGGGGCGCCAGGCTGGTAACG 1343161 30 96.7 36 ..................A........... GGGGTTGATTATGATATTGAAAGAAATGACGATTCC 1343227 30 96.7 36 ..................A........... GATCCTGCAGGTGTCCAGCGTAGCAGGTTCCGTACT 1343293 30 96.7 0 ..................A........... | ========== ====== ====== ====== ============================== =========================================== ================== 55 30 99.7 37 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : TTCAGTACCCAGCACCAGACGCCGGCTGTAACGGACGTCGCGCAGCTCGTAAAAGATGACCACGTCTTCGTCGGGGTTCATGAGCCGGCCGGCTTCGTGCTGCAGGCGCTGAAACTGCGCTTCGGTCAACTCGCCCTCGAAGACGGAGCGCTGCACCCAGGTCAGATAGCGCCGGAAGAGCTTAAGCATTTTGGCGACGCGCCGCACGTTGACATCGTAAACGGCAATGTAGTACGGCATCGTAACCTCCTGTAATTACGTGAGAAGTGCCCTGACTGGCGTCGTCGACCCCAAGATAACGAACTGAATTCGGCAACGCAAATGATAGGTAAAAGAAAATCTGTTGTTTTATTTCTTTTATTTTTAGCAGTTTAATAAAAGTTGTCGGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACTCCGGGGACTTGACATTCCGGATCAAATCGCTTATAATACCCTCCAGAAGCCGGTTCTGCTCTTTGAAAGGCCGG # Right flank : TAAAGCCACGGATTGGCTAATCTTGAAAAAGTTGGAGCGATAGGGGCGAAGGGGTTACAATAGGGCCCCAATGGTGTCTTTTAAATAAAGCGACCGCTGCTGAAGTAGTACCGACCTCTGCTGTATGTATCATCAGGAGCGTGAAACGCTGTATCTGGGAGCTCTCCTGCACGATCTGGGGAAATTCAGGCAACGAGCCCATGACGAGCGTACCAAACATGCGCTCATCTCTGTAGCGATCATTGATCGGCTAATAGGCACGCGAACAGATGCAGAGCAAATCAAAACGCTTGTTTCCTATCATCATCGGGAAGACCTGAGCCAAAGCGGGCTGCAAGGACGTTTGCGTAAGCTGGCCGAAATTGTCTGTGAAGCCGACTCGCTGGCCAGTGGCGAACGTAATCCCGATATAGAGCAGGCGCAGCGACCGCTTGAGAGTATCTTCAGCCACGTCCGGCTCGAACAATCGGCAGGCGCATCACCTCAGGTCGCCTGGCAAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 1444254-1442301 **** Predicted by CRISPRDetect 2.4 *** >NC_015966.1 Rhodothermus marinus SG0.5JP17-172, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1444253 30 100.0 37 .............................. TCTGCAAAGGGAGGATGAGGACATCGAACTCGAGGAG 1444186 30 100.0 36 .............................. GCGGGCCGGTGCCCCGACGCTCTTGCGCAGCAGTTG 1444120 30 100.0 36 .............................. GCTCGGGCCTGAAGTCGGTACAGGTGAACGTGTCCT 1444054 30 100.0 35 .............................. TGCTGAGATGGGGCTGGCGAAGCATCTGGCGAATG 1443989 30 100.0 36 .............................. TCGTCACGCCCCGCTGAAGGTGCGGAGAGCTGGCCT 1443923 30 100.0 36 .............................. GGTGTACAAGCGTGAGGGATCGATCGTCGAGGAATA 1443857 30 100.0 37 .............................. ACGCTTCATGCTCGATCCAGACTTCGAGCATCGACCT 1443790 30 100.0 36 .............................. GAAGCTAAATAATGCAAAGTTAGCTCGTAAATATCG 1443724 30 100.0 38 .............................. GCGGCGGGTTCGATGTGGACGGCGTGATTGCCGCCGGA 1443656 30 100.0 37 .............................. TTGTACTCCTCGCCCCAGCGGTCCAGAACCCGGTTGG 1443589 30 100.0 37 .............................. GTTCAAACCGGTAGTAATCGTTCTTCACCATTTCTTC 1443522 30 100.0 36 .............................. AAGAAGTTGTGACGATGACTGAGTGAGCCAAATTGC 1443456 30 100.0 37 .............................. GTGTTTTTCCGACTATGACAGCGATGCGATCGTGCGG 1443389 30 100.0 36 .............................. CTGTTTCAGCACGTAATTGAAAAGCGGCACGTCCTG 1443323 30 100.0 36 .............................. GAAGGAGCAGTTGCAGATAGTCCACGACAATCAGAC 1443257 30 100.0 36 .............................. CTTCGCCAGCGCCGCTCCAGCACGCGCCAGATGGCA 1443191 30 100.0 36 .............................. CGGGGAATGCAATCGTTCCGCAGGTCGGGGCAGTTT 1443125 30 100.0 36 .............................. ACTGGGAAAAGCAAGGGCGGCCCGGCGGCCGCTTTC 1443059 30 100.0 33 .............................. TTGCAAAACGCAACGTTTGGCGTATATTAAAGC 1442996 30 100.0 35 .............................. TCTTTGACGAAGGCCTATCGAAGTACTGCGTCCTT 1442931 30 100.0 38 .............................. ACTTCGAAAGCGAACGCGTGAAATATGATATATAGCAA 1442863 30 100.0 37 .............................. TCCTTGTATACGAGGACTGGGGCGCCGTCTGGTCCGA 1442796 30 100.0 36 .............................. GACGTTCTACCGGCACCAAACGCTCTACCGAAGGAC 1442730 30 100.0 39 .............................. GTCTATATGCACCGTGCAGATCACAGTCAAAGGCAGCAT 1442661 30 100.0 35 .............................. CCTAAAGCCCCTTTCCTGGGCTACCTTTTCTAACT 1442596 30 100.0 37 .............................. CATCAGGCACGATTGGCGGTTGGAGCATTACGACCAA 1442529 30 100.0 35 .............................. ATCTTCGCTGACCATGTGATGGATGAACTTCCAGG 1442464 30 100.0 37 .............................. AAACGAGTGTGGCTGTACGCAACCGGATGCGGGCGCT 1442397 30 100.0 37 .............................. TCAGATCTCGGTGACGAATGGGAATGGCTCGCTCATG 1442330 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 100.0 36 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : AGGGCCGCAGCGCCTGCAGGGTGCGCACGTGATGAGCACCGACCTGCGCGGCAGCGTTTCGCTGGTGCTGGCGGGTCTGGTGGCCGAAGGCGAAACGCACGTGTTGCGCGTCTACCACCTCGACCGCGGCTACGAAAACCTCGAAGGCAAGCTGTCGGCCGCCGGCATTGCCATCCGCCGCGAAAGCTACGACGAGTTTGCTACCCCTGCCTCCGAATCAGCCGAAGAAAGCTGAATCGTCCCAACCTGTTGTTATACAATCACCTGTATCCAGAACGGCATCGTCGTCTCCACCCCGTTGAAGCCCTGTCCGAGCCGACCAGCAATGTCCCGACAAAAATTGATCGACACATCATACTGATAAACAAAAGTTTATGCAAAGTCGTCGACCCCCGGGGTTTCAGGGGTAACCGGAGGTCGACGACGCCAGGGGCTTGACATTCCCGATCAAATCGCTTATAATTTCTCCAAGAAGGCGGTTCTGCTCTTTGAAAGGCCGG # Right flank : TTTATAGATTCACACAAGCAACTCTAAAGCTCTTCGCTTCTTTCGACTTGCAATTGCGCGGGGAGGCATTGTAGTATGCGGGGCGAACCTGATCGTCTGGAACCATGCCCCCTGCTGTTGCCACACGGGCGCGGCGGGCCCGCCAGATCGCCGAAGTGCTGCTCCGCCACGGCCTGGGCTATCTTGTGAGTATCTTCGGCCTGGAGCGCTTCGTGCCTTTGCATCGGGGTCTGCTGGGCCATCCGCGCCGCCCCGAACCCTATGCCGCGCCCGAGCACCTGCGCATGGCGCTCGAAGAGCTGGGCGCCGCCTGGATCAAGCTCGGCCAGTTTCTGGCCACCCGCGCCGACCTGCTTCCCCCTTCCTACCAGCGCGAACTGGCCCGTCTGCAGGATGCCGCCGCCCCCGTCCCGGGCGCGCAAATCCAGGCCGTCATCGAGGCCGAACTGGGACGCCCGGTCTCCGAGCTGTTCGCCCGCTTCGAGCCCGAACCACTGGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 1988815-1987988 **** Predicted by CRISPRDetect 2.4 *** >NC_015966.1 Rhodothermus marinus SG0.5JP17-172, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1988814 30 100.0 38 .............................. GATCCTGCATGGCTTCAGGCGTCCAAGCGGCACGCAGC 1988746 30 100.0 37 .............................. GTGGCCAACGATGCGACGGGGAGTCGTTACGCTTACA 1988679 30 100.0 36 .............................. GTAGGTGAAGGCTACGGCATCGAAGCCGGTTTCGTT 1988613 30 100.0 38 .............................. CTGTCGTCACGGACGAGATCGCCTGGGTAGCAGACCCG 1988545 30 100.0 36 .............................. TGTTCACTAAAACTTCACATCATTTTCACAAAAACT 1988479 30 100.0 38 .............................. CTCGGCACGTCTGAGCCAGCTAGGACCTGCCGTCCAAG 1988411 30 100.0 38 .............................. ACGTAAGCGTGTCGAACACCGGGATGTGTATGTGCCAG 1988343 30 100.0 36 .............................. CTTGCTTCATGGAGTCGCTTGATCATGAGCACGTCG 1988277 30 100.0 36 .............................. CTTGTGGACGACGGAATGCGTTCCCGTAGCGTAAAC 1988211 30 100.0 38 .............................. TTGCGTGCATGACAACCTCCATTGTTTGTTGTTGTTGC 1988143 30 100.0 37 .............................. CACGCGCAAGGCGCTCGAACCCGAGTGGGAGGCGTCC 1988076 30 96.7 29 .............................C TTGAGGCGCCATGAAGGCCATCATATTTT 1988017 30 93.3 0 ...........................G.G | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 36 GTTTTAATCGCACCTTTTTGGTATTGAAAT # Left flank : AAGTTTCCAGCATGATAAACAAATATCGACAGGCGTGTCAAGTGGGGCGGGGGTGAAGGATCGGTAAAGCCGCACCGTGTGGCGCCGGCCGACGTGCAGGTAGGAGTGGTCGGGATCCGATCTGAATCGAGGGTCGGGAACGCGTTGTCTGGCGTGCGCTGGTCCGGGAAACTCAGGACCGTTAATGGAACGGTGGTTTTACAGGATGGTCAAGACACAGGAAACGTGAGTTGTGCGAGCATAAATGCCGTAATTTCATAAGGTAATGCCGTAAGCAGGGTCGTCGTCCACGGAGATAACGAAAAGCATTCGGCGAAGAAGGTGGGGTAAATTCAAGAAGATTGTCTGTATGATTTTGTTTTAAAATGGTTTGTCTGAAGTCGTCGGCCCTCCGGGGTTTCGGGGGTAACCGGAGCTCGACGACACAGGGGGCTTGACATTCCCGATCAAATCGCTTATAATGCCCTCCAGAACCCGGTTCTGCTCTTTGAAAGGCCGGG # Right flank : AGCGGCAAAACAAAAGCCCCGTGAGCTTGAGGCTCCGGGGCTTTTCGGTCAGCTCTTCGGGACGTTTGCTGTGGACGCGGGCAGCTACTCCAGTCCCAGCACTTCCGGTCCCTGGATGAAGACGATGTCCACCGGGATGCCGGCCTGCTGGATGCGGGCCAGATCGGCGCGGAGCGTGTCGTCCATCTGACCGTAGCGTTCGATGAAGGCGGCCGTGGCCGCATAGTCGCCGTCGCCCTGCAGGCGGAGAATCTGTTCCGAGAGCGCCGCGACGGCCGCCTGCATGCGCTCGGGCACGACCCGGTAGGTGCCGGTGGCCGCGTCGCGCGTGAAGGCGCCCTGCTCCTTGAAGAAGTTGAATCGGATGAGGTTGGCGCGGCCGTGGGCACTGGCCGCCCCGAAACGGATCGAGCGGAAAATACCGGCCAGGAAGGTCACGTAGTGGTCCATCGGATCGGCCTCCCACTCGCCGCGGTCGATCAGCCAGGTGACCATGTAGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCGCACCTTTTTGGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.40,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 46177-46630 **** Predicted by CRISPRDetect 2.4 *** >NC_015970.1 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46177 28 100.0 33 ............................ CAGGTGCGCCCCTACGCGGAGGTGATCAAGAAG 46238 28 100.0 33 ............................ CCAGAATCAGAAAACGCAGCATCTGAGGCGATG 46299 28 100.0 33 ............................ CACGACCGGTGAGCACGTCGAGGATCCGAAGCG 46360 28 100.0 33 ............................ TCAAGAAGGTGTTGCCATAATGAAACCGCGATA 46421 28 100.0 33 ............................ CTGTCCACCTTCTGCGGCCGAAAAAGACGGCGG 46482 28 100.0 33 ............................ CTTTGCGCTGATCTTTACGGCCCGCGTGCTTTT 46543 28 100.0 33 ............................ TTACACGCATGGAGGCGTAGCCGCCCGGCGGGA 46604 26 92.9 0 ...........--............... | T [46607] ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 33 GGGTCATCCCTGCGCGCGCGGGAGTCGG # Left flank : ACATGGCTTGTGCGCAACTGTGACGTGATCGTTGTAGAATCGCTCAGTATCAAAGGAATGCTCAGAAGCGGTCGTTTTTCGCGTCACATTGCCGATGCGGCATGGGGAACTTTTTTCCAGATGCTCCAGTACAAGTGTGAGCGGTATGGGCGCACCCTGCTCAGGGTAGAGCGTTCTTATCCGAGCAGCAAGAAGTGCAGCCGTTGCGGTAAGATTCGAAAGGCATTGTCACTATCGGAACGCACGTATCGGTGTGATCAGTGCGGACTGAAGATAGATCGTGACGAGAACGCTGCGTTGAACTTGATGAAACTCGGGTTGGCTCACCTTACGAGCCCTACCGCCAGACTGGCGGGAAGTGACGCCGGAGGAGGTACGATCGCGGGTGGTGCCGCCGCCTGCACGTAGACGGTTGCGGCATTGGAGCGATCGGCCCCGGAATCCGTGCTTTGCAGGGAGAGCCCCGCGCGCCGACCGCTGGTGTGCACACCTTGCGCAGC # Right flank : GTATAGCCCGCCCCGATCAGCTCCGGATGGCCATCACCGTCTAGGTCGCCGGTGGTGATGCCCAGGTTCGTCGGGCCCTCCAGCAGCGGAAAGATGAGCTGATCGGTAGTAATCTCCAGGGGGTTTTCGCCACTTTCGTAGTTCAGGACGGCCAGTTGCCCGGTGTAGAAATTCGGATAGAACACCTCATCGTCCCCGTCGCCATTGATGTCCACCACCACGCCGCCAAAGAGCGCGACGTGGTCGCCACTGGAAGCGCGCACATACACGTTCTGTGCGTTCGCGTCCGGAAACTGATACTGATCCGGGCCGAGCACGTCTCCGTTTGTGAAGTTAAAGTTATTCCACGAGTGCATCGACAGTTCATACGTACCGTCGCCGTCCAGATCGGCGGGTAGAATTGCATAGGGGCTGCCACCGCCACGATTGACCGGATCAAAACCCTCTGACGCGCGGCTGCTGATGCGCGCTTCCTCGACCCATACTTCAAAGCCACTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTCATCCCTGCGCGCGCGGGAGTCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 50808-50242 **** Predicted by CRISPRDetect 2.4 *** >NC_015970.1 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 50807 37 100.0 37 ..................................... CTCAAGCGCATTGTAAAAGAAACCATCCTTAAACAAC 50733 37 100.0 37 ..................................... CGCGAATGCCCGGTGAAAGGCGATCGGCCGATCCATC 50659 37 100.0 41 ..................................... TCTCATTCAAAAACGGCTGATAAATCGCGCTGTTCATAGCA 50581 37 100.0 35 ..................................... CGATTTCACGGAGCGACCGCATGGCATCTCCGTTT 50509 37 100.0 41 ..................................... CAGACGACCGCACCGTTAACCAGTTTGCTTCCGCCGTATTC 50431 37 100.0 39 ..................................... CGATATCCGTCGGCCAGCCAGCCCCGGATTACTTTCTCC 50355 37 100.0 40 ..................................... CCCGTGTCTCTGGAGTTTGTCCCGGATACGCCCGATCACC 50278 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 100.0 39 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : AGTTGGAGTGGCCCTGGTCGGCAACCGAAGCGGCGGCTACTACCGAAGAGGAGGCCGCCGAGGATGAATCGGACCTGTGGGTGGATCAGATCGGTCCCAATAGTCAGGATATTATCGCCGAGGTGGTGGATAACAGTCGTGCACCGTTTACGATTCGCATTTTTGTGCGCGGACTTGAAAATGAAAGATTCCCCTGTGGAGGGGCCAGCCATAGAGCGATCGAGGTGGGGCAGCGTATTCGGGTCAAGGTGTCTCAGTGGAACAAAAAAGCCGGACGTCCCACCATGTTTTCCGTACAGAGCATCCGGGTTTAGCCTGACAGTACGTTGCTTTCTTGAAACTGATACCATATAATAAAGTAGAGAGCGAAGAGGTGTGACACGGAATTGTCACAGGGGTTTAAAGGCAAATTTCGTTCCGTTTTTTGGCGTTCTGTGCGCGAAAAAATCGGCCTGTTTGGCCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : GGGTATTTCATGCGGGCGGAGTATTCTTGCGCTTAGCTGCGTGTCTGCTTTTGTCCAGCAGCTCGCTTTCGCTGCTTTGAGCTAATGCGCCGGAATCAATTTGCCACCTGCGCGGCTGCGGGCAATTGCAGGCAGGCAGTGATTGACGCCGTCTGGTCGGTTGCCAGTCCTGAACGTTTTGAAGGACGAGAAAGGGAAGACGGAAAAAGCTCTTTTCCTGAATCTCGACTTCCCGATTGGAAGGAAGGCCACGTTCGCTCCGGTGCGGGATGTGATTGAAACGGGCCACCTTGTGTAAGGACGATATATCGCAGACTGCGCTGTGTCTTACCCAAGGATTGCTGCTCGTTGTCCTCTGAGTTGCTTCACCTCCAGTGCTGAAGCGCCGGAAGTCTGGCGGCGGATCGTCGTCGGGTCGCACGCACATCAAACAGGACAACAGAGACAGCCTGCCGGGTGGGGGCATCGACATATCGCCCTGACTCCTCGGGACTTGTCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 3 59275-58250 **** Predicted by CRISPRDetect 2.4 *** >NC_015970.1 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 59274 37 100.0 38 ..................................... GCCGCTGGGAGTCTCCTGGAAACCAAGCTCATTGATCC 59199 37 100.0 40 ..................................... ATAGCACTCTCCGGGCCGGTGTCGGGACTCACCACGTCGC 59122 37 100.0 40 ..................................... CTGTTGGCTCTGTTGGTCCATCCCAGCACCTCATCCTTGA 59045 37 100.0 43 ..................................... TGGGATCTCGTACGGGAGCACGTCGAACCTTTCTTTCAAGTCG 58965 37 100.0 41 ..................................... TGCTGGCTACAGCTCAACGACAATGCCTGCTGAGCGCTTGC 58887 37 100.0 39 ..................................... GCTCAAGCTTTTCGAGCACGTCCATCATCTCTTCGATGA 58811 37 100.0 34 ..................................... GGGAATGAGCGCCATAAGCAGCGTGCGATCGTCG 58740 37 100.0 36 ..................................... GGCCTCTTCGCCGAGGTAGCGCTGGCACCAGTCCAG 58667 37 100.0 40 ..................................... CTCGTAGAGCGCATCCTCGTCCATCTCACGCCCGTCGATG 58590 37 100.0 39 ..................................... GTCATAGTACTTATTTACCCACCCCTCGTCTGGCTCATC 58514 37 100.0 41 ..................................... GGCCTCCCAGTCCGGAATGCGCTGCTGCCCCTGAGGATCCT 58436 37 100.0 36 ..................................... GCATACGCGCCTGTTCGTTGAGCACAAGCTTTTCAA 58363 37 100.0 40 ..................................... ACCGTGCATATTGACCGGGCTCGGGACGATCTGGGTGCCA 58286 37 94.6 0 ..................................A.T | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.6 39 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : GAAGGCTACAATGACTGTGCGCCACAGGATGAATCCTATCGGCCGCGTTTTTCCAGGCGCCAGTGGCCTCGCCCGAGCCGGATATAGGGACGGCCGGATGGCGTGCGGCCGATGCGCAACCCCCGGGTGCCGACGCTCAGGCCGATGCCTCGATGGCTGATGGTCAGCCGAACGGGTCCCAGGCGAAACGTCTTGTACAGATGCAGCGGCATGGCGTAAAGCAGCTGGTTGGAATGAATGCACCGGATGAACGTGCAAATACCGACCGGGATGCTTTCCAGAATTTCCGAAAAAGGGGAAGAACTTCGGCGAACGGGGGGCTTGACATTCTGATCAAAAACACGTATGCTTCGACGTGTTCAGCAGGGAAGGGGTGTGACACGGAATTGTCACAGGGGTTTGGAAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCGCACGCAAAAATCGGCCCGTTTGACCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : CCGCTTTAGACGAGACAATCGACAGGAAAGAGGCTTTTCGGGGGCAGCAGGACACGGTCTTGACAGGGACGTGTCGTCTTGCTTTTCTTCCCTGAAGCATCCGTAAAGCTTCTGGAGCCTACCGCATGCCTGCAGCGCGTCGTGGCGGTCCGGTTCTGATGGCCACCCTGGGCGAGCAGCCGCAGGTGGTCACGCTTACGCTGGACCTGCTGGCGGCACGACGCGTGACGTTCGACGAGCTGGTGCTTTTCCATACCGAGCCGCACTATCCGGCCCTTCAGCGTGCGCTCCAGCGTCTGGAAACCGAACTGGCGCAGTGGCCCGCCTATCGCGAGCTTACGGTACGGCGCGTGCTCTTCCGGGATGAGGCGGGCCGACCGCTGACCGATGTGCGCGCCGATGCGGAGGCACGGCAGGTGTATCGCATCCTGTTTCGAGAGGTGCTGGAAGTCAAACGGCAGCGGCGCCCGTTGCATTTTCTGATCGCCGGAGGCCGTAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 73246-72658 **** Predicted by CRISPRDetect 2.4 *** >NC_015970.1 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 73245 37 100.0 46 ..................................... ACGATATTCCACCTTGAGCGGCCACCCGAGCTTGTCACGGGCTTCG 73162 37 100.0 43 ..................................... GCTGGATATCATTGCAGATGAATGCACGATTCCCAACGAAAAC 73082 37 100.0 47 ..................................... TGGACTGGCGCCACTTCAGGTTCTCCATTCGTGGAAGAATGGAGACG 72998 37 100.0 41 ..................................... GCACAGCGTGGCAGACAAGCTGCAGCACACACGGGGGTCCC 72920 37 100.0 39 ..................................... TCAAGCTTGAGTCGCTAGACCAGTCGAAGATCGATTTCA 72844 37 100.0 38 ..................................... TTCTCCGCCCGCAAATTCCCATCCTCTGAACCCCTCCA 72769 37 100.0 38 ..................................... TCTTTCACTTTATCCCACACCTTCTCGGGAGCGTTTAC 72694 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 8 37 100.0 42 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : GGCTGAGGTGAAGGCTTACCCCCGGGTGTTCGATCTGGAAGTGAGTTGTCTGGTCGAGGTGGAAGCGGAGCGGATCTATGATGAGGTAGACCGCATCTGCGAGACGATCAAAGACTGGGCAAGTTCGCATCTGAACGGGCGCAGGCCCTGCGCCTCGATCAAATGGGACGTCCCTCGAATGTTAAAGGGGCGAATGCGTGTTCGTTATGAAGAGGCCCGGGAGTTCATGAGCCGGCGACGTGAGCACATCTGCGCCCAGGTTCAGCAACACTGCAACTGACGTCGGAGGGGTGGTCGAAGCCGGCCACCCCTCCCCTTGACATTTCGTGAGAAATCACTTATGATCCCAGAAGTGGGCCATTGGACGAGGGGGGTGTGACACGGAATTGTCACAGGGGTTTGAGAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGTGCGCGCAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTCGCATGGGCCCCGTAACAATGGG # Right flank : TACGCCAGCACAGGTTGTAGACAAGGCTCGAATTGTAGAAGAAGTCCGACCCATGAAGTAGGGGTCGAAAAAAGCACTTCTTGTGGGAAATTTTTCTCTTCATCGATGGGATAAACCACTCATGCGTTGATGTGCGGCTGTTCGCATCTTTCTCGGACAGGACGATCCGGTCGTAGTGATTCACGAGATGGAAGCCGGGCAGATCTACGACGCCGAAGTGCCGGAAGGCCCCTGCTGGCCGGTGGCATGGGTGTACGAGTTTGCCTACTGCCTGCGGCGGGGCTACTACGCCTGGGTTGAAGGGCCCGGAGAGCCTGTTGCGCTGGATACCGGAGAAGGCGTGTGGCTGGCCTCGGACGCCTGGGGTGGGCCGGTGCGGTGGGTACAGGACGGTGCCGGTTGTCCCGTTCCCCTGCTACGGGTGCCCCGGGCATGCGCCGACGATTCCGACAGACGCCCCGAACATCTGATGCTGGCGGCCCTTGCCGATCTGGTGGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 5 79992-79804 **** Predicted by CRISPRDetect 2.4 *** >NC_015970.1 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 79991 37 97.3 36 .......A............................. CATGTTCGCTGGCCCATTGCTCCAGCGAGGCCAACA 79918 37 100.0 41 ..................................... TCTGTATATGGGTTGTAGTAGAGCGTTCCGCTGACCAGGCG 79840 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 99.1 39 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : CCGGTCAAAACCGCTCGGCCATGCACGGGTGGTTCGCCGCGGGCGGACACCTTCCTTCGGGCGTCGGAGGCTTTCTCGTGGTCGACCTGCTGCAGGCCACGGCACCCGAACAGTCCGGCATTATCTGGGAGGGAGGCTACGCACTTTCCGGAGTGGCAACCGTCGTTGCCTATCGCATGACGTCCCGTCGCCTGCTGTTCGGCACGCTGGCAGGCCCGGGTCTGTGGCAGCTGTCGATCGACGCTTCGGTCTCAGGCGTCAACACGGCCGTAAAGGACCACACGGCAATCGGCTTTCTGCTGGGCGGCTATGGTCTGGTGCGCCTGGGCGGCACGTTTACGGCCGGATTACTTTTCACGAGGCGCTGGACCGCAACGGAACCCTCTTCGGTGGGCTGCTTCGTCGAATGCCTCTCCCGCACGATCGGCAATGGACATGCGGGCGGCAGCGGCCTGTCGGTCGTGATCGGCGCCACGATCCGCTGATCACCGCCACACGCG # Right flank : AAACGGGTGGGATATAAGCGCAAGGGGTGGCCTGCTTTCTTCTTCGGAGTCAGCAGCTGTTCAGGAAAGGCTTCGCAGCATTCAATGGGCTAAACGACTCATGCGCCTGTTCTGATTGGGTCGGATCTTCAGACTTATGCGGCAATAAGGCTTTCAGAAAAGGCTTTCATGGAGCGTTTCTGGTTTTTGTTCGCGATCGGATCCCTTGCATTTCTGATCTACCGCTATAATCAAATATGCCGAAAAAATCCAGGACTAAACCGTCAAGTTTATGCTTTTACATTAGCTTTATTTTTAATAGTTTTTATTGTAGCAAATATTTATGAATATATATGCGCGGCTCCCCTTTTTGTTATCTACTTGATTTTTCTTCTGAAAACTTTTTTCGATCATGATAAAATCCTGGCTCTTTCTGCATTGATTACTGTCGTTGCTTCTTTCAATCTTATGTTAGAAAATATTTCTGTATTCAGTTCATTTTTTCTTCTTGCATGGCTTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 6 80846-80647 **** Predicted by CRISPRDetect 2.4 *** >NC_015970.1 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 80845 37 100.0 47 ..................................... GCCCATTCGGCCTCGGCAACGCCAACACGCTGACGATCACGACCCGA 80761 37 100.0 41 ..................................... TGATATGTCTCTTCTTCACGACATCTGGTATCCGTGCTTTC 80683 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 3 37 100.0 44 GTCCGAAAACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : CCCTGGCATCGACCGGGTATCGAGGGGCCGTCGAGGTCGAAACGGTCTATCGCCTATTGGAGGCGCTTGGAGACCCGGTGGGCCGTCTGTTTGCGAAACGCCGCACGTCATTGCTTGAAGCGCTGGAGCAGAGCCGTCATTCGCGTCTGATAGGGGGTAATTTTTCGATTGACGAACAGACTTATGGGGTTGTGCGCAGCCGACTTGAAGGGTTCCTCCATGAGGCGGCCCGGTTAACGGACCAGACGCTTCAGGCTCCACAACTACCACGTTCGGAAGTGCTGGACTGGGTGGGCCTCGAGTGAGTCGCTACGTCTTGACATTCCGGCACAGAACACTTATGATTCAGGAAAGAGGTATCTGAACGGCGGAGGTGTGACACGGAATTGTCACGGGGGTTTGAGAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCACGCGAAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTCTGAGTGGCCCCGTAACAATGGG # Right flank : TTTACACCGCCATGATCGGACATTATTTTCTGAATAAAAAGCAGGAATAGCCATGCGACGGATCGCGCTGCTTTTCGGTCTGCTGCTTGCGCTGCCGCTTCGTGCGCAGCCCACGTTCGATCTGCTGGGCGGCCTCGGCCCGGCGCGGCTCGGTGCCGGTCAAAACCGCTCGGCCATGCACGGGTGGTTCGCCGCGGGCGGACACCTTCCTTCGGGCGTCGGAGGCTTTCTCGTGGTCGACCTGCTGCAGGCCACGGCACCCGAACAGTCCGGCATTATCTGGGAGGGAGGCTACGCACTTTCCGGAGTGGCAACCGTCGTTGCCTATCGCATGACGTCCCGTCGCCTGCTGTTCGGCACGCTGGCAGGCCCGGGTCTGTGGCAGCTGTCGATCGACGCTTCGGTCTCAGGCGTCAACACGGCCGTAAAGGACCACACGGCAATCGGCTTTCTGCTGGGCGGCTATGGTCTGGTGCGCCTGGGCGGCACGTTTACGGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAAACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 7 92221-91071 **** Predicted by CRISPRDetect 2.4 *** >NC_015970.1 Rhodothermus marinus SG0.5JP17-172 plasmid pRHOM17201, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 92220 37 100.0 42 ..................................... TAGTGTACGACGCATATTCCCCGACGGCTCGGAACTGATTGT 92141 37 100.0 37 ..................................... TGCCAGTAGAAGGCAAACCCGAACGGGGCGTCCTGAG 92067 37 100.0 44 ..................................... ATCCTTTGCCACGTCTACAAATTCCCGCTCGTTACCTTCTTCAT 91986 37 100.0 46 ..................................... CACTCCCGCTCCGCGACTCGTTGCGCCGCCCGCAGGGACGACGCAA 91903 37 100.0 36 ..................................... TCTTTGATCTTCTTCATGGCTCCCACCGTAGTTTTG 91830 37 100.0 45 ..................................... ATGACCCGGCCGCCGACGACGATGTTGCCGTCCTTGTCGATTTGG 91748 37 100.0 45 ..................................... TCTGAATACTTAAGATTACAAACTTGCCCGCCCTGAAGCGCGCCA 91666 37 100.0 39 ..................................... GCGCTCTCGAAGCAGACGGGTAAGAACCCGCTTGATGCC 91590 37 100.0 46 ..................................... TTTTCTTCACACAAACACGTTAAAGCACGTCACGATCCCGTTCGCC 91507 37 100.0 43 ..................................... CCGTACATGAACAGCACGATGGACACCGCCGACTGCTCATCCC 91427 37 100.0 47 ..................................... CGTCGAAGCGCTGGGGTGACGTCCGCCTGGCATACAGTCTCTTTGCC 91343 37 100.0 41 ..................................... CGAGAAAGTACTCGCCGCGTGCGATCTCGAATCGTGATGTA 91265 37 100.0 40 ..................................... GGGCTCGTCGGTTATGACGTCGCTGTTCAGGTTAGGAATA 91188 37 100.0 44 ..................................... TACAGACCATAAGCCTGCCCGCCGATCTCGATGAGCCAGTTCTT 91107 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 15 37 100.0 43 GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Left flank : TCCGGCGTGTCAGCCCCGGGGGTAATCATTGCCCGGCCGGAACTGTTTCGGGCTACGCAACCGCCGGATCGTGGGCGGTCTGACTCCCGGCGACGATGTGGGGATTGAAGCGCCGAGCGGGGTTTTGCGGACACACGAATCTGACCGTTGCCCGGCGTGCAGGCTTTGAGCAGCCCCGTTGCCTGCGGTGCTCAGCCGCTCCTCTGATGCTGTTCCGGTGTATGCCCGGGGCGTCAGACCATCGACTGCAGACATGGGTGGTTGACGGTCACTATCGGAGCCGTATTGTTCAGCTGGTAGTAAGGGTGCCGGCTCTTGACATTCCGCTGAGAAACACTTATGCTCCTGAAAGCGAGCAGCTGAATGGAGGGGGGTGTGACACGGAATTGTCACAGGGGTTTGAAAGCAAATTTCGTTCCGTTTTTTGGCGTTCTGCGCGCGCAAAAATCGGCCCGTTTGGCCGCAAAAAGGCCGGTTTGGAGTGGCCCCGTAACAATGGG # Right flank : GCCACCCGGAATAGCTCCTGCTATAAGACCTCGGGGATTGAATGCTGGAGACAAATTTTGACCTGACCTTTCTGGCGTTTCTTTTTGCTAGCAGGGGCCCTGGCAGCTGGTGCTCGGTCGTGAGCTGTTGATTTTGCCTCCCGTTATTGTTTCTTTTCGGTTATAAAGGCTTTTTCCGCGGTCAACTGAAGGAGTTCTATTCTGAAATGGACCGCTACTGGTATTCGGCAGCGGCGCGTCTCGGGTTGTGGGACACTCTGCCCGAAGCGCAACAGGGGCTGGTCAATAACCTCTACAGACGACTTCGATTCTATGCCCACGCGGTCCTGGAGGGCTACGAAGCATTTGCTTTCGACAAGACGGAGTCCGAGTCTCTGAGTTCGCTTCTGGCCGTTATCGACAAACTGACGATTCGAGGGTGCCCGACGCTGGTTGATCTCGACCTGGAGACGGCCTTACTCGAAGGCCCCTGCCGCCAATTCGTCGATGCAGTCCCGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAAGACTTGACCCGATGAAAAGGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //