Array 1 1625-159 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000036.1 Streptomyces daghestanicus strain JCM 4365 sequence036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1624 29 100.0 32 ............................. AGCCTCTCCAGGGCCGAGCAGCGGCGGGTCTT 1563 29 100.0 32 ............................. CGCTACCGGTCGCCGGGGGCGTCCGGGTGGAC 1502 29 100.0 32 ............................. CGGAGCACTGGAGGGAGTGACCGCATGGCTGG 1441 29 96.6 32 ............................G CCCCACGGCGCCGAGATCGGCCCTTACCCCAC 1380 29 100.0 32 ............................. TCCCCCAGGGCGGCGCTGACGGTGGCCGGGTC 1319 29 100.0 32 ............................. CTGACTCAAGAGCAGCTCGGCGAGCGCATCGG 1258 27 89.7 32 ....................--......G TGATCGAGATCGTGACCAGCAGCGACTTCTAC 1199 29 96.6 32 ............................G GACCTGCGCGGGCTCGCCCGGCACGGCCTCCT 1138 29 93.1 32 .C..........................G GGTGTGCTCCTCACCCACTGGGCGCACCGGTC 1077 29 100.0 32 ............................. GGCCCATCAGCGTTGCCTGCCCGTGCGGCAGC 1016 29 96.6 32 ..............T.............. TGGACCGACGGCGTGCACGCCTCGTGTCCACG 955 29 93.1 32 ..............T.......C...... CGGTACCACGAGCGGACCTCGGCGCCCGGCTG 894 29 89.7 32 ...T.............A.......T... TTCGCACCTTCGGTGAGAAGCGCAACCCGCTG 833 29 100.0 32 ............................. GTCACCGACGACACCGCAGCGATCCAGGCCGC G [811] 771 29 82.8 32 .....T.........C...T...G....G ACATGGTGGACGTCGCTGGCCGTCACCTGCTG 710 29 86.2 32 .....T........T......C.T..... CCGACCGTGTTGAAGCGCGTCTCCGTCGCCGA 649 29 89.7 32 .....G........T.............G GTGCGCGGGCCTTCCGTGTCCACCAGCTCGTA 588 28 82.8 32 ..T..............A...A.G.-... CTGGCGCAGATCGGCGGGCCGTTGTCCGCGAC 528 29 72.4 30 .CT......C...TT....A.....G..G TTCGTTCCGCGCCCCACACGTCGTCATCGA C [524] 468 28 82.8 33 ........G.....TA.....-.....T. CGGTCCAGGTCTCCATCCAGGTCCGGGAGGACG 407 28 72.4 11 ......T.T..AG..A.....A.G.-... CCCGACGGCAT Deletion [369] 368 28 82.8 32 A.GT.................-....C.. CCGATGACCTCAGCTGACCCCTCGTCCTCGTC 308 28 89.7 32 ........T.....A......-....... CGCACGTCGTGCTGCACCAGCAGCTGACTGGA 248 29 86.2 32 A..........A.........A......G CACGCCTACCACGTCGCGGTGTGCAACGCGCC 187 29 82.8 0 ...A.........T..T.........C.G | ========== ====== ====== ====== ============================= ================================= ================== 25 29 90.6 31 GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Left flank : CATCCATCGACTGGAACGCCGGGCACGCCTTCCCGCAATCATGAATGCCGCACACCCACATGAACCACAACCGCCCCCGGCCACCGCTGACCTCATCCAGCCGCCGCCGGAACGCCACCGACACGTACCGGTCCCACATCATCCCCGCCACAGCCGCCGTATCCAGCAGATGCCCCAGCAGCAGATGCCTCCGCCCACCGTTACGCGCCGCCGACTTCCCCCACAACACCGACACCCGCGTGACGACCTCATCGGCCAACCCCATCGACCGCATCAACTCGACGACCGACCGCTCGTCCTCCACAACCGCCCCCCGCTCCACAGCGCACTTTGCGCGGCACTGTAAACGGACCCACTGACAACGAGCCCGAGACCCAGGCACCGCAGGACGCAGCCCACCCGCCGGCCGACGCCCCACCGGGCTGCTCGCAACTCCCGGTTTGTCGAACGAGGTGAAGGAAAACAGGTACCCTCGCATGCATCACCGCAGCTCAAGAAGT # Right flank : GCAGCCGGTTGAAGTCGCTAACGCTGGCGCGGTTGGCCAGCTCGGGTCTGGTGAGGCGGCCGGAGGCGGTGCCGCAGATGCTGGCCGGCCGGATCACCGGCCGACTGGCGGAAGCCGGGGGTGAGGCGCTGGTCGACCAGCCGTTTCCGTGGCTGATCC # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [41-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12201-13197 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000036.1 Streptomyces daghestanicus strain JCM 4365 sequence036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================== ================== 12201 29 96.6 32 ............................C GGCTTCAGCAGGTAGTACCCCGACTTCCACGT 12262 29 96.6 32 ............................C GGGGAGCGGTTGGCCGTCTCCCCCGGCACTTC 12323 29 100.0 32 ............................. TCGTGGGACCTCGCGCGCCGGGTCGGGGTCGG 12384 29 100.0 27 ............................. ATCGTCGGCGGCCAGCCAGACGATGAG 12440 29 100.0 32 ............................. CCTGCCGCCCGGGACGACCGGGGGATGTTCTG 12501 29 100.0 32 ............................. CGCGGGCGGCGTCTTCGGCGGCCTGGGCCAGG 12562 29 100.0 29 ............................. ATGGCGGCGGCGGCCGAGGAGGGCGAGCC 12620 29 100.0 32 ............................. TCGGCGGCGGGGGCCGGGTACTGGAGGCTGTA 12681 29 96.6 29 ............................C ATGGCGGTGCACGTGCTGGAGTCCGAGTC 12739 29 86.2 95 .AA....................T.T... CTCGAGCTCGCCGGGAACGGCGCGATCGCGACATCGTCCCCGTCTCCGGAGGGGGGCAGTTCCGGTGCGCGTACAATGAGCAGCGTGAACGGCAG G [12742] 12864 29 86.2 31 ...A...T.........G.......T... GAACTGTCCGACTCCGGCGTGATGTAGCTCG 12924 29 82.8 32 ..............T..G......AT..C GGAGCGGCGACGGCGATGACGCCGAGCAGGGT 12985 29 75.9 32 ....G.T.......T..G.A...C....C TATGTCTGGAGCGCGGAGGTTGTCGTCCCGAA 13046 29 82.8 32 ....C.T........T.G..........C CGAGCGTGGTCGATTTCCGCGCCGCCTTCGAC 13107 29 89.7 32 ....A......A.A............... TCCCTCTTCAGATCGACCGCCGGCTCCGGCCA C [13123] 13169 29 86.2 0 ........T.A.......A....T..... | ========== ====== ====== ====== ============================= =============================================================================================== ================== 16 29 92.5 35 GTCGTCCCCGCGCCCGCAGGGGTAGCTCG # Left flank : CCTGCCGGACGAGGACCTCAGCGCGCTGTGGGACGACGGCGACACCATCGTCAGCAGCGGCCGCAACTGGAGCGCCGAACACCACCTCGACATCATCCCGGAACCCCCCGGCCCCGCTTCCGCGGAGACGGCTCCATGAGCGCCGGAACGACCGTGATCGTCCTCATCGCCGCCCCACCCGGCCTCCGGGGCCACCTCACCCGATGGTTCATCGAAGTGGCCCCCGGCGTCTACGTCGGCAACCCCAACCCCCGCATCCGCGACCGGCTGTGGAACGTCCTCGCCGAACGCATACATGACGGCCAAGCCGTCATGATCGAACCAGCGGCTACGGAACAAGGCTGGACGGCCCGCACAGCCGGCCGCGATCGTTGGACCCCCGTCGACTTCGACGGTCTCACCCTCATCGCCCGCCCACGCCAGAACGGACAAGCCTGGCGGCCCTCGACCGACGTAAAGCAAAACGGCATGATCACCTGACAACACCGCAGGTCATGAGT # Right flank : GGTAAATGTGCGCTTAGCGCATGCGCGTGTGCCGTAAGCGAGTACGTAATTGCACAGGTCAGATGGCCTTCGGCAGATCGGGTGAACGAACTTTCCGATAGAAGACCATAGTTGGGGTTGATCCTCTATAGGCTGACCTTCGTGTGGAACCTCCGGTCCCTTCACGTCCCGCGGGCGTGGAGGACGACCGCTCCTCCCGCCCGGAGGAAAGGGAATGCCGGAGAACGAACCGCCGGACTACGGCCGGTGGGCCTTCTACGTCGCTTGCATGGATCTGGCCATCCAGCTCGCAAACTGGCTCACCTGGTAGCCCGGCGCTCGTCACAGGGCCGTTTCCGACGGGGAACGGCCCTCCACGTCAGGCGCTGCTTATGGAAGATGCACCGTCCTGGGGCGACCCCCGCGCTGGTGCGTCCCGAGATGCAATACCTGACGCTGCCAACATACCCATTTGTTCACGGCGCCGCCCAGTGAACCGTCGGGGCAATCCGCGTGGAGAG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.33, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCAGGGGTAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 140-900 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000044.1 Streptomyces daghestanicus strain JCM 4365 sequence044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 140 29 96.6 32 ............................C TGACTCCCCGGATGTTGCGGGAGCGAGCGGAG 201 29 96.6 32 ............................C GCGGACCGGTGTCCCCGAAACGCCGCGCCATG 262 29 100.0 32 ............................. CCCCCGCCCGACTCCCGGGCGGGGGTTTTCTG 323 29 100.0 32 ............................. CTGATCTCGGCTTCGGCCGCGCTGATCGCCGC 384 29 100.0 32 ............................. GCTCGCGGCTGTGCTTGCCGTCCACCCCTCGG 445 29 100.0 32 ............................. GCTCGCGGCTGTGCTTGCCGTCCACCCCTCGG 506 29 96.6 32 ............................T CGTGCTTCACACCCTCTGCTTCACAGTGTCCG 567 29 93.1 32 ..........G.................C CTCATGCGGCGGTACTTGACCCCGCGGGAACT 628 29 100.0 33 ............................. GCGGCTCCGGCCCCGGCCCCGGTCCTGGCCGGG 690 29 93.1 32 .......................T.T... ATCAGCCGGAAGGCCCACCCGGCTCTGCTGCT 751 29 82.8 32 ...G..........T........T.T..C CTCATCCGCGCCCTCGAACGCGGCGCCTGGAT 812 29 89.7 32 ...G..........T.............C CCTTCGGCTCAACGGCCGTGTCACCGTTGATA 873 28 79.3 0 A..G.................A.-.G..C | ========== ====== ====== ====== ============================= ================================= ================== 13 29 94.4 32 GTCCTCCCCGCGCCCGCGGGGGTAGCTCG # Left flank : GCCTCGGTCGTCTCCGGCTAAGGAGGTAACTCCGAGATCGGCCGGCTGTCGTCCCACCGAGCTGCTCGCAACTCACGCCAGGCCAAACGAGGTGAAGGAAAACAGGTACCCTCGCATGCATCACCGCAGCTCAAGAAGTG # Right flank : CCGCCGCATCCCCTGCCCCGCTCTCCGTGGTGTGCTGCTCCCCGCGTCCGCAGGGAGGACCCTGCCACCGCATGTGTCCTGCGTCGTCGTAGCCCGTGATCCCCGCGCGCGGGATACGCCTCTGCGCCGTGAGGCTGCGGTTCGGCTGGTGCGGAAGTCGCTGTATCGACCGCCAGTCCTACTGTCGATTGTGTGCTGAGCGGGGCACGGCTCGTACGGCCTAACGCGGCAGGAGCCCGGCCGTTGTGCTGGCATGGGGGGTGGCCTGTGCTTCTTAAGCTGGTCTTGTGGGTATCTGATCTGTGAGTTTCACTCGGTCGGATGTTGCCCTGGCCTGGTGGCTAACCGGTTGTCAGTGGCAGCTGCTTGACTGGCAGCCGGAAACGAATTGGGGGTTCGCTATGACGACGGTGATTCACAAGACGCCGGAGCAGTTACGGGAGCAGCGGGACAGGTTGCTGGCTGAAACGGGCATGTCCTATGAGCAGCTTCGTGACCGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTAGCTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67059-68313 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000007.1 Streptomyces daghestanicus strain JCM 4365 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 67059 30 96.7 31 .............................T CGATCTACCACGTCGCGATCTACGCGGGCGA 67120 30 96.7 36 .............................T CTGCGGGGACGCCCTTCAGGCCGCCGCCGGCGCCGG 67186 30 96.7 31 .............................T GCCCCAGCGCGAAGTGTGGATCTCCGAACGT 67247 30 93.3 31 ............................AC CGGCAGCGCGTTCAGCACGTGCTCCAGCAGG 67308 30 96.7 31 .............................A GCTCCAGTTGCTCGATCGCCCGGTCTTTGGT 67369 30 100.0 31 .............................. GACAGCTCACGGGAAGCGGGGAACGGAACCA 67430 30 100.0 31 .............................. TCGTCCTCATGCAGTACGCCGGACGCCCACG 67491 30 96.7 31 .............................T CGTTCTCGGCGTCGGTGGCCTCACCCCACGG 67552 30 96.7 31 .............................C ACCACGGTGTCCCTGCCGGATCTCGGAGTCC 67613 30 100.0 31 .............................. ACAGGGCGGCGGCCAGGTGCAGCAGTCCGCC 67674 30 100.0 31 .............................. ACAGGGCGGCGGCCAGGTGCAGCAGTCCGCC 67735 30 96.7 31 .............................C GACTCCATCCACTTCTCCAACCTGGCCTGAG 67796 30 96.7 31 ......................C....... TGTACCAGCCATCGCGAGGCGCCTGGCGGCC 67857 30 100.0 31 .............................. TGGCCGTCCGGGTCGACACTGCTGCCGCGCG 67918 30 93.3 31 ..........A..................T TGCGGGACTCCAGCTCGACACCGAGCGCCCA 67979 30 96.7 31 .............................A TCTCACGGGCCGCCGCCTGGCCGTCGACATG 68040 30 96.7 31 .............................T GCTCGACCCGGGCCCATCCGGCGTTGTACCC 68101 30 100.0 31 .............................. TCGACCCCAGCACGAACTCCCCCGGATGCAG 68162 30 96.7 31 .............................A GCTCACCACCTGGGTCCCCGGCGACGCCTCC 68223 30 93.3 31 ................T............C TTCCCTACGCCGTCGGCTACATGGACCGCGT 68284 30 90.0 0 ................T.....C......T | ========== ====== ====== ====== ============================== ==================================== ================== 21 30 96.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGAACTCCTCGACAGCGGACGCAACTACGGAGACGAGCCGATCTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCGGGCCTGCGCGGGTTCCTCACCCGCTGGCTCCTCGAAATCTCTCCAGGCGTCTTCCTCGGCTCACCCTCCGCCCGCGTCCGCGACATCCTCTGGGACGAAGTCCGCACCTACTCCGGCCAAGGACGCGCCCTGCTCGCCTACCACACCGACAACGAACAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAGGGCCTCACCCTCCTCCACCGCCCCTCTCCCCCGACGACAACCCGCCCGACAAACGAGCCACCCCGCCAGGGATGGAGCAAAGCAGCGAAGCGACGAAGGTTCGGACGGTGACAATGAGTAAGAACCCGAAGCCCGTTATTACCCATTCGTCCCTCGCTCGGAAAGTGAGCAAAAACCGGTCCTCCTGGCGATAAAGGCCCAGGTCGGCTCCT # Right flank : TTGCCACCCAATAGGAAAAAGACGCTGCCCAACTGGTCCCTGCCCGGGGGGCCCGCGTCCAGCTCCAACCGCACCTCCTCCAAGCAGCGGTTCCCCTGGGCTCCCTCGCCGGTGGTGCCGTCGCCGACGCGTTCGGCCTGCGCGCCCCACTGTGTCTGTCCGCGCCCGCCCTGACCGTCGTCACGATCACCCGCGCCGCGCTCACCCACACCGGCTCCCCCGGTGAAGCCGCCCAGCAGGACAGGGGGCCGAGCCGCAGTGATCGCAATCTCCGAGGACCTCCGGCGGATCTGTCTTACGCCGCCGGTCTCCGTGCGACCGAGCATCTCAAGGTCGTCCCTCGTGACGACTCTCCCTGGGCCAGGTCGACGCCGGGATCTTGGTCCTCACGGATCAGGTCACCTTTAGTACTGCAACGGTGTTTGCTGTGACTGGTGGCCAGGTCAGGGGATGTGTCCGCGTCGTTTGTAGTGACTGAGCCGAGCCTGGTACTGCCGTCT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2733-158 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000076.1 Streptomyces daghestanicus strain JCM 4365 sequence076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================================================== ================== 2732 29 89.7 32 ..............C.........G...G CCGCGGCCACCGTGCAGGCCGAGTGCCAGGGG 2671 29 89.7 32 ..............C.........G...G ACCGAGCTCGCCCGCTTCTTCGTTCAGCTCAC 2610 29 89.7 32 ..............C.........G...T CGGCCCGCCTCGCGCGCGCACGCGTAGAGGCC 2549 29 89.7 32 ..............C....A....G.... CCGTGGTACCTGCGCTGCGAACTGTGCGGATG 2488 29 89.7 30 ..............C......A..G.... ACGGCGGCGATGGCGGACCGGGACTTGACC 2429 29 72.4 93 .G....T......AC..T...AG.G.... AGGCCGTAGGCCCGCGCGGCATACTCCGCGAACTGCTCCCCGTGTACGCGGGGATGGTCCCTCCCGCTCGGGCGCCTCGATCCAGCCCTGATC C,T [2424,2426] 2305 29 69.0 93 C.GC........T........AG.AC..T GCCACCGCATGTGTCCTGCGTCGTCGTGGCCCGTGCTCCCCGCGCGCGGGATACGCCTCTGCGCCGTAAGGCTGCGGTCCGGCTGGTGCGGAA 2183 29 82.8 33 ..G...................A.C..GA CACCTGGCCCCGCGCCACCACGACGACACCCCC 2120 29 82.8 32 ..G...................A.C..TT CGGGCTGGCCTGGCCGGAGCCCAGACGCCTCG 2058 29 75.9 31 ..T.........TTC.......A....GT CCCACCCACGGGCGTCGATGGGACGTCCCAT G [2041] 1997 29 82.8 30 .C....................A.C..GG CGTCGTCGTCCACGCGGACCTCGGCCGGGT 1936 29 79.3 29 ...C..........C......GC.C..G. TGGCCGGAACCGACCTCGAAACCGTCGCC G [1919] 1875 29 100.0 34 ............................. GGTCAACGTCAGCGTCGCTACCCAGGATGTCGTC 1811 29 86.2 31 ..............C.......A.C...G GCATTGGGCTTCTGCCGGCGAACGTACTGGG C [1808] 1750 29 65.5 105 .....G........C..A...C.AGCTTG CGGCATTGCCAGGGCGCAGCCGCCCCACCAGGCTGTTCTCAACTCGCGGCAGGCCGAACGAGGTGGGAAAACAGGTACCCTCGCATGCATCACCGCAGCTCAAGA 1615 29 86.2 30 ..............C.......A.C.T.. GAGGCGTGCCCGCGGGACGACCGGTCGTCC A [1598] 1554 29 86.2 31 ..............C.......A.C...A CGGCCTGATCGACCGGTACATGGCCCTGTAC 1493 29 93.1 31 ...........................GA TGCGCGTCCTCCGGATCGCCGGGGACACCAC 1432 29 93.1 31 ......................C.C.... GCACGGGCGGCGTCGGCCCGGCGGACAGCGG C [1421] 1370 29 93.1 31 ..............C.........C.... GGCGGTACGGCGGAGCTGCACGACCGACCGA 1309 29 79.3 33 ..........T..TC......G.A.C... TGGAGCGGCTCGTCGCGTTTAGGAACGCAGCGC 1248 29 82.8 87 ........T...T.........A.C...A GCGCCGTCGTCTACCGGTGCGTGGCTGCGATGTCGTCCTCACGTTTGGGGGCTCGCCGTATGAGCTGCTCCCCGGCGGGCCGGTCAG A [1231] 1129 29 65.5 116 .A..GG....T...C..A....A.C..GG AGACTTCGCCGACATCGGCCGGCTGTCGTCCCGCCAGGCTGCTCCCCCCTCACAGCAGGCCGAACGAGGTGAAGGAAAACAGGTACCGTCGCGTGCATCGCTGCAGGTCAAGAAGT A [1109] 983 29 93.1 31 ...........................GG CGGAGTTCACCCCTGGGACCAGATGCACATC 922 29 93.1 31 ...........................GG TGCTGTCCGCGTCGATCGAGGCGTGCATCAA 861 29 100.0 31 ............................. GCAGAGGCGGCATTCCATGAGCCAGGGCTGG 800 29 100.0 31 ............................. AGGAACTCCCACATGCGGTCGCCACGGAGGG 739 29 82.8 31 ..............C.......A.C..TG CCTGACCACGCCGCCTACGTCGACCAGCTCG 678 29 75.9 35 ........T...G.C.......A.C..TG TGGCGATCCTCCGCTGTACCCATCCGGCCTCCTCC 613 29 79.3 35 ...C..........C.......A.C..GA ACGAACGAACGGCGCTGGAACATCACCTATTGGGC 548 29 75.9 31 ...C.......A..G...T.....C..GT GGACCGGGCGCAGCATCGGCAGCCTCCGGGG 488 29 82.8 94 ..G..A................A....GA GCACGCGGAGCGGGAGCGGATCAAAGCGAAATCGTCCCTGAGCCCGCAGGAGGGGGAGCTCCGAGTGCCCCGTGCCGGCCGGAGAGCGGGTTCC 365 29 89.7 30 ...T....................C...A CGTCGTCGCCCAGCTCGCGCAGGAGCTTGG 305 27 82.8 31 C.............-.-.......C...G AGGGCGACGTCCCCACCCAGACCATGGACGT 247 29 93.1 31 ........................C..T. CGCGGCGGGCGGACTGCTTGCGGTCGGTGCC G [230] 186 29 82.8 0 .............TC.......A..C.G. | ========== ====== ====== ====== ============================= ==================================================================================================================== ================== 36 29 84.9 43 GTCGTCCCCGCGCCTGCGGGGTTGTTCCC # Left flank : CTCTACCCCAGCTCTGGCCTGGCCACATACAGACTGACCGCCTGATCCACGACCTTCACTTCAGAGGAACTGCACCCTGGCGAGGTCGGACAGCTTGG # Right flank : CAGCCGGTTGAAGTCGCCAACGGTGGCGCGGTTGGCCAGCTCGGGTCTGGTGAGGCGGCCGGAGGCGGTGCCGCAGATGCCGGCCGGCCGGATCACCGGCCGACTGGCGGAAGCCGGGGGTGAGGCGCTGGTCGACCAGCCGTTTCCGTGGCTGATCC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.25, 5:0, 6:0.25, 7:-0.87, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [31-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 140-411 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000055.1 Streptomyces daghestanicus strain JCM 4365 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 140 29 96.6 32 ............................G CCGAACCCGAACTCGGGCCAGCGCAGCCACAG 201 29 100.0 32 ............................. AGGTTCTTCTACGGCACCCAGTCGGGCGGGAC 262 29 100.0 32 ............................. ATGACCGTCATCGTGTCCGGCGGGTTCTGCTT 323 29 96.6 32 ..............T.............. TCCACGTCTGGCAAGTCGTCATCGGCCAGGGC 384 28 75.9 0 ...........C........AC.-..CTT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTCCTCCCCGCGCCCGCGGGGGTAGCTCC # Left flank : GCCTCGGTCGTCTCCGGCTAAGGAGGTAACTCCGAGATCGGCCGGCTGTCGTCCCACCGAGCTGCTCGCAACTCACGGCAGGCCAAACGAGGTGAAGGAAGACAGGTACCCTCGCATGCATCACCGCAGCTCAAGAAGTG # Right flank : TGATCCTGGCGAGTCCGCGACGGGTCCGTTGGGCCCATCCGGTCCGCCGGGCATCGCGGGCGCGCGGGGCGCTGACGGTGCGGCAGGCGAGCCGGGATTTGCCGGTGCGTCCGGTGCGCCGGACGCACCGGCGAACCAGAGGCGGGCTCCGCTGGTGAGCCTGGTGTGGCGGGGCCACCGGGGTCGCAGGGCGAGCCGGACCCGGCCAAGCCGGAGGGTCCGCAGGGCCCGACGGGTGAGCCGGGGGCGCAAGGAGATCAAGGTCCGGCGGGCCCGGCGTGCCCGGACGGGTACGCGATTCAGCCGCCGGATGATCCCGACGCGCTCGTGTGTCGTCGGGACGGGGCGCCGGCCCCGGAACTGTCGGGTGGCGGAGGCCGTTTCGTGGTGTCCGGATAGGGTCGGCGCATGATTCGCGCAGTCATCTTCGACGTTGGCGAGTGCCTCGTGGACGAGACCCGGGAGTACGGCACCTGGGCCGACTGGCTCGGCGTTCCCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCCCGCGGGGGTAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCGCCCGCGGGGGTCAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5883-8845 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000055.1 Streptomyces daghestanicus strain JCM 4365 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================= ================== 5883 27 75.0 33 .C...TG...T.T....-.........T GAGCGCCGTCGCGTACCGGTGCGTGGCCGCGAT 5943 28 85.7 79 .......T......G.A.....G..... GCCGTACGAGTTGCATGCCTGACAGGCCGGCCAGGACGTGCCCGCGCGCGGACTGACTTCCCGCCGCCCTGATCGGGAC TT,G,A [5955,5958,5964] 6054 28 89.3 32 .......T..G...A............. TCCGGGCCCGTCGCCAACATCGTCACTGCGGC A,CGA,T [6064,6073,6077] 6119 28 71.4 109 .C...T..T..C.......A..C.AT.. CGACGGCGGCCGGCTGTTGTCCCACCGGGCTGCTCGCAACTCCCGGTTTGCCGAACGAGGTGAAGGAAAACAGGTACCCTCGCGTGCATCACCGCAGCTCAAGAAGTGT 6256 28 92.9 33 ..............C...........C. TGGAGAAGCTCGCCTCCGGCGATGTCATCAAGT 6317 28 92.9 33 ..............C...........G. GATGTTGCCCGAGGAGCTGACCAGGCCGGCGGT 6378 28 92.9 33 ..............C......A...... CGCCGCGCCAGCACCAACCCGGAAGCGCTCGCG 6439 28 96.4 33 ..............C............. CGTGGGCGCCCCGACGAGGGCCTCGGTCGTGAT 6500 28 92.9 33 ............T.C............. CCCGACGATGACCAGTGAGCCCCGGCCCTGGCT 6561 28 96.4 33 ..............C............. GGCCCCGCGCCGCCAGCCCAGCCCCTGGGCACG 6622 28 96.4 33 ..............C............. CATGGCGGCTGAGCTTGCCCTAGACAGCATTGA 6683 28 100.0 33 ............................ CACGCGGGCGTCCTGCCCGAAGACCACCAGTTC 6744 28 100.0 33 ............................ CTGGTACTCGTAGAGCTGCATGCCGGTGAGCCC 6805 28 89.3 33 .....TT.......C............. GCGCTCGGCACCCACGACGGCCTCTTCGGCGTC 6866 28 92.9 33 ..............C..A.......... CCGCCAGATGTTCGCGGGCACGACGTGCACCGC 6927 28 100.0 32 ............................ CCTCGCCTCGCCGTCGTCCTGCTCGCCGCCGA 6987 28 78.6 157 ...AG.......TT.......C.C.... CCCGACCATGTTGGAGCGCGTCTCCGATGCCACGTCGTCCGCACGACTTCGCCGACATCAGCCGGCTGTCGTCTCACCGAGTTGCTCGCAACTCACGGCAGGCCAAACGAGGTGAAGGAAACCAGGTGACCTCGCACGCATCGCCGCAGGTCAAGAA 7172 28 92.9 33 T......................T.... GGGCTCTAGCGTCGATCTCGTGTCGCCCGGCAC 7233 28 85.7 33 ..............C..A....CT.... CGCACCGGACACGTCACACCGGCCGCCCGGCAG 7294 28 89.3 33 ........T.....C........T.... CTCGCCGTTGTCGTGCGCGCCGCCGTCGTGGCC 7355 27 89.3 33 ..............C..-.......T.. CCCGGCCGGCGGCGGCGCCTCGCTGACCTACGG 7415 28 78.6 33 A.......T.G...C..A.....C.... CCGCACGGGCGGCGTCGGCCCGGCGGACAGCGG 7476 28 96.4 33 ..............C............. CCGGCGGTACGGCGGAGCTGCACGACCGACCGA 7537 28 75.0 33 .C.A......T..TC.........T.C. TGGAGCGGCTCGTCGCGTCCAGGAACGCAGCGC 7598 28 89.3 89 ........T...T....A.......... CAGTGTCGTCGCCTACCGGTGCGTGGCTGCGATGTCGTCCTCACGTTTGGGGGCTCGCCGTATGAGCTGCTCCCCGGCGGGCCCGTCAG 7715 28 85.7 110 ....C.........C..A.A........ GGAGACTTCGCCGACAACGGCCGGCTGCCCCCAGGCCGCCAACTCACAGCAGGGTGGAGGAGGCGAAAGAAAATAGGTACCGTCGCGTGCATCACCGCAGCTCAAGAAGT 7853 28 100.0 33 ............................ TCGGCAGTCGATCGGCAGCCGATCAGCGACCAC 7914 28 100.0 33 ............................ TGACCCCGCGAGCCCGACGAGATGGGGCGGTCC 7975 28 100.0 33 ............................ TCATCCTCGGCATCGAGGCGTCCCTGCTGATCC 8036 28 100.0 33 ............................ CTCGCCCAGCGCCGCCGAGACGGTGGCCGGGTC 8097 28 100.0 33 ............................ GCGCTCGACACCACCACCCCCGGCGGCCGGCTC 8158 28 96.4 33 .......................T.... CCCCGGACTCGTCTACCGCTGGGGCGACATGCC 8219 28 96.4 33 .......................T.... CGGGTCGGCCACGTCGGGCGGCATCGTCGACGC 8280 28 96.4 33 .......................T.... GTAGCCACCACCACCGACCACGAGGAGCAGACC 8341 28 96.4 33 .......................T.... CATGGTCCTGATGACCATCGGAGCCTTCGCCGC 8402 28 96.4 82 .......................T.... CGCGCCCTTTGATTGGGCTGTGATTGACCGGCAGTTGCGGGGGTTGCTCGATGCCACGGGGCGGCGTCCTCTCTGTGGGCGC 8512 28 96.4 33 .......................T.... CCTGCTCACCCGGTTCTCGCTGAGGGTGGCGGG 8573 28 92.9 33 ..............C.....A....... GGAGGCGCCCGCGGTTGAGGTTCCGGCCCAGCC 8634 28 89.3 33 C......T...............T.... CACGGTCCAGCCGGTGTGTGCGGCCGAGACGTG 8695 28 89.3 33 .............TC..A.......... CATGTCGTAGATCGGTGCGGTGTAGTCGCTGCG 8756 28 92.9 33 .............T..A........... CGACTCCCGGGCCGTGCGCCAGACCGCCAGGTC 8817 28 78.6 0 ................GC.T.C..C.C. | A [8831] ========== ====== ====== ====== ============================ ============================================================================================================================================================= ================== 42 28 91.6 43 GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Left flank : ACCACCGTGTGCGCCATGCTCCTGCAGACCGTCGACCGCGGAGACAACCTCCCCCTCGCCGACCAACTTCAGCAGTGGGCCTCCGAACTGCGCTTTCGCTCCAGCCAGTGACTCGGAAGTCGGGATATAGACGGCCTTCACGGCTGTTTGCGCGTCAGCGCCTGCTCCTCGGGTTTCTGAGCGGTGAGGGACACGGTGGTCTCCATTGGCGGGGGCGGAGGGCGTGGCCACTGGGCACCTGGTCGAGCACCCCTCGACGGCGACCCCGGCGTGGACGCCGTCGTCGTCTCTGCGCTCACGGGGGCGAGGGCGGGGGTAGCTCTGTAGACGGCTTGCCCGTCACCGACGACCACGAGTTGTCCCCGTGCCTGCGGCCGCCGCCAGCGGCCAGGCCTCACGAGGTAGCTCGACGGTGGTCTGCGCCTGTTCACCGCACCAGCGGTGGTTTCCGCGCCCGCGGTACGGGTTCTAGGCTTCCAGGTTCGCAGGACAGGGAGGCC # Right flank : CACGTTCGGCAAAGCGGCAGGTGGCTCCGACGGAGGCTCCTCACCCCGCCGGTCCGCCGCCAAGCCGTTCTCCGCACGCAGAGCGGTCAGCCACGGCCACAGATCCGGCAGAGCCTGCCGTGGGCAACCCAGACGGTGCTCGATCCGGCACTGCTGATCCCGCGCTGCCGGGAACGTCCCGTACACCGTCACCCGGCCATCCGACAGCTCAATCCACCGATGCTCCGCCGGCACCAGGTGCGCCAGCACCCGCACCCTCGGCTCCAGCAGCACCCAGTCGCCGTCCAGCGTCACCGCCCGATCCTGCGGCAGCCCGCAATACGGGCATGCCGACTGGCCAGTGCCGATCCGTCGCGGCCGCTCCTCGATAAGCCCCATACCGCGAGCCTGCGGGTGTATGCCAGCCGCCAGTAGGACGCAAACCAGACGGGACCGGAGAGAAAGCCGCGCCGAGCGAGGGCAGGCCCGTCACGAAAGGCGGTTGCCTTTGCAGAAACCGC # Questionable array : NO Score: 4.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:-0.84, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCTGCGGGGGTAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [43-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18334-20867 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMTC01000055.1 Streptomyces daghestanicus strain JCM 4365 sequence055, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 18334 29 75.9 105 ............T.T......CAAC...G ACATCGGCCGACTGTCGTCCCACCGGGCTGCTCGCAACTCCCGGCTTGCAGAACGAGGTGAAGGAAAACAGGTACCCTCGCGTGCATCACCGCAGGTGAAGAAGT A [18353] 18469 29 89.7 31 ......................A.C...T GTTCTACGTCGTGCTCGGGGTGGCCGTGCTG G [18486] 18530 29 89.7 31 ......................A.C..G. CTCCGCCTCCCCCGTTCAGGTACTTCATCGG G [18547] 18591 29 89.7 31 ......................A.C...A AGCCCGCTGGCGGCCGCGCCGCCGTCGGTGG G [18608] 18652 29 89.7 31 ......................A.C...T CCGTCACGCTCGGCGGCTCCGTGCTGTACCC G [18669] 18713 29 93.1 31 ......................A.C.... CGCCGACGCCGGGCAAGCGAACGGACCTTCC G [18730] 18774 29 89.7 31 ......................A.C...G GTCGACGGCTCGGTGCCGACCCCGGCGGACA G [18791] 18835 29 86.2 31 ......................A.C..GT TCGGGGTCCCCGGCTCGATGTGGAGCAGCGG G [18852] 18896 29 93.1 31 ......................A.C.... GGCGCGCCCTGGAGATCTTCGCGCACTGCAC G [18913] 18957 29 89.7 32 ......................A.C..A. GCGGCGGTCTACTTCTTCATCTTCGGCCTGCT G [18974] 19019 29 93.1 31 ......................A.C.... CGGAGGCGCTCCTGTGAGTGACGCCGAGATC G [19036] 19080 29 93.1 31 ......................A.C.... CGACCGGGCCGCGCTGCGGCACGCTCCCCGC G [19097] 19141 29 89.7 31 ......................A.C..G. GGTTCAGTACGCCGAGCCACTCCGTGGAGGA G [19158] 19202 29 89.7 31 ......................A.C...T AGAGACCGCCCGCGCCTGGGGGGTGCCCCGG G [19219] 19263 29 89.7 31 ......................A.C...G GGCAGCTCACCTTCTCCCGGTTCGGTGTCCC G [19280] 19324 29 89.7 31 ......................A.C...G TCGCCCGCGCCCGCCGTCAGCTCCTGCGCGG G [19341] 19385 29 89.7 31 ......................A.C...G GTCGTACACGGTGTCCGCCGTGCGGGAGCCT G [19402] 19446 29 93.1 40 ......................A.C.... TCGCCGTCGCCGTCGTCCTGCTCGCCGCCGGTTCGTCCTC G [19463] 19516 29 75.9 31 ......T.....T....A....A.C..GT GGACCAGGCCGACCTTCCGGCAGCGCTGCGC A [19533] 19577 29 86.2 31 ...C.T..........G.......C.... GGCGGTACGGCGGAGCTGCCCGACCGACCGA TG [19591] 19639 29 75.9 32 ..G.......T..T.......G..CC..T GGAGCGGCTCGTCGCGTACGGGAACGCAGCGG 19700 29 75.9 30 .C..........T.T..A....A.C..T. GTCACGGTCGTGCTTCCGCTTGCCGTTCCA 19759 29 72.4 135 .....T..T...T.........G.C.TGA GGCCGCGCCCGCAGAGGTAGCTCGGAGACTTCACCGGCATCGGTCGGCTGTCCCACCGGGCTGCCGACATACAGCAGGCCGAACGAGGTGAAGGAAAACAGGTACCCTCGCACGCATCGCTGCAGCTCAAGAAGT T [19775] 19924 29 100.0 32 ............................. CCTGCTTCGGTCGGCCCGCGTCAGCCAGGCGC 19985 29 96.6 32 ............................G CGTGGACAGCTGCCCGCAGGGGCTGCTGAGCT 20046 29 96.6 32 ............................A TCACGTGCTGCCACACACCCGTCCAGTCGCCC 20107 29 96.6 32 ............................G GACTCGGGGGTCTTCACGGCGAGGACCTGGTT 20168 29 100.0 32 ............................. CCGCGGTTCCACTCCCTGTTCTGCGGCGGCCA 20229 29 100.0 32 ............................. AGAACGAGCCCCGGCCGGGCTTCCACACACCG 20290 29 96.6 32 ............................G CCTCGCCGCCGCGAGTTCACGATCGGGGAGGG 20351 29 93.1 32 ...................A........T GGTGGGAGTCGAGGCCGAGGTACTCGCCGGCC 20412 29 96.6 32 ............................G TGGATGCCGCCGTGGAGGGTGCCGCTGGTCCA 20473 29 100.0 32 ............................. CGCCCACAGAGGCCGTAGGCGCCCGTCTGAGC 20534 29 100.0 32 ............................. CGGGTCGCGCAGTTGCTCGGCGAGGACCTCGC 20595 29 96.6 32 ............................T GGCCGCAGCACCTTCGCCGTCTGCCGCCGCCA 20656 29 100.0 32 ............................. TTGGCTTCCTCTACCCCCGGCCCGAGCGGCAC 20717 29 100.0 32 ............................. GTCCAGTGGCACCAGTCGCCCGACCCGGAGGT 20778 29 96.6 32 ............................A CTGCACGACTGGCTCTCGCACCCGTAGCCACG 20839 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 39 29 91.4 36 GTCGTCCCCGCGCCCGCGGGGTTGGTCCC # Left flank : CTGGCTGCGCTGTTCCGAAACGATGGTGACACGCGTGCTGGATGCTCGAACGGGTGAGGGCCTTCTGACTTCGGTGTGGATCGCGACATCTACGCCCCGACCGCAGGAGTCCCTCGTGCTCCACCGCAATGCCCCGCTGACCCCGACCGGGCGGCTTCGCCTGGCCCAGTACCGGGCGTGACGGTCCGCCCGATCCTCGCGTCCTCCCCGCGCCCGCAGGGCAGCTCCCGGCTCGTGCTCCTGTACGGCGTCGCCCTGGTCACCTCCCCGCGCTTGCGGGGGTGGCTCGGAGCCGGGGGAAGTCGTCATCGGTGGCGCGGTTTGCCAGCTCGGGTCTGGTGATGCCGCCGGAGGCGGTGCCGCAGATGCTGGCCGACCGGCTCACCGAACGGCTGGCGGAAACCAGGGGTGACGCGCTGGTCGACCAGCCGTTTCCGTGGCTGACCCGGCGCGGTCTGGTCCAGCGCCACCGTACGCTCGACATCGAGGGCGGCGTCGAG # Right flank : GCGAGGAGCTTGGCGAGGTGGGTGCGGCTCGTTTCGAGGGACGGGCTGACCTGGGGAGACGTTGATTGGCGTCCAGGTGGGCAGGTCTTCTCCCT # Questionable array : NO Score: 4.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.23, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCCCGCGGGGTTGGTCCC # Alternate repeat : GTCGTCCCCGCGCCCGCGGGGTAGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCGTGCGGGGTTGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //