Array 1 117227-119299 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWJL01000004.1 Yersinia pekkanenii strain CIP110230T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117227 28 100.0 33 ............................ TTAGTTAGGTAATTCAGGCCACTTGATATCGGA 117288 28 100.0 33 ............................ CTAAATTAAATGTTCGCAGTACATTTACTTATG 117349 28 100.0 32 ............................ AGATTGATAGTTTATTTTAGGGCTTCTAATTC 117409 28 100.0 32 ............................ CCAAATCCCAATGGTTCCAGCAGCAACGACCC 117469 28 100.0 32 ............................ CACAGGTCACCACGCCAGACCCAGTTAAATGG 117529 28 100.0 32 ............................ GATAATTCACTTTACTATAGTAAAGTAATTAT 117589 28 100.0 32 ............................ CCGGCTGCTTACCAGATTTAATATGGCCTATC 117649 28 100.0 32 ............................ TGAAACGCTGGTTAAAGATATCGACAAAATGC 117709 28 100.0 32 ............................ AGAAAGAAATCCAATCTTAATAGATTTCGCTC 117769 28 100.0 32 ............................ CAACACTAAAGATAAAGAAGGCTGCGCAAAGC 117829 28 100.0 32 ............................ TCAAGCAGCTCGTTAGCGATGCGAGTATAACC 117889 28 100.0 32 ............................ AGAACGAGATGACTGCCTTCTATTTGCCATAC 117949 28 100.0 32 ............................ TCGAGAAATAATACGGTACTCAATTAATTTTC 118009 28 100.0 32 ............................ GCAGGCTAGAGGACCGCGCAGAGAAAGCAGAA 118069 28 100.0 32 ............................ TGAAGCAATGCGATGAAACCGGCCGACCACCA 118129 28 100.0 32 ............................ AAATGGTTCATCAGCTTGGACTACCCAAAGGC 118189 28 100.0 32 ............................ ATACTTCTTTGATTACCGTATGTTGTAGCTTT 118249 28 100.0 33 ............................ ATTAGAGGAACTATGTAAATGATAATTTTATAT 118310 28 100.0 32 ............................ GTCATTCCCCATATGAACACGGCTATGTGGGA 118370 28 100.0 32 ............................ ATGCTTAATAGCCCACTGTTCTATAGTGAACA 118430 28 100.0 32 ............................ GCGTAACATGGAGCGCATAGCTCGACTAAATG 118490 28 100.0 32 ............................ GTCAATATAACTGCTGAATCACGCGTTTACTT 118550 28 100.0 32 ............................ ATTACGCAGTAAACCAAAGAAAGCAGCTTAAG 118610 28 100.0 33 ............................ CAATAACTCATATAAGCATTGCACTCGCGAACT 118671 28 100.0 32 ............................ TAAATACAGCTCAATGCGATGCGTCATTGATT 118731 28 96.4 32 .......A.................... CATGCAATATCCCCCAGGACAAACAGCTCATT 118791 28 100.0 32 ............................ AGCATCAGTTGTGCCAGTGAACCGTCTGGTGT 118851 28 100.0 32 ............................ TCTTGCCTTAATCATTGCGTCTGCGATTAAAT 118911 28 100.0 32 ............................ CTCGTTAATAGAATCGCTTTAACTAAAGTTCG 118971 28 100.0 33 ............................ CAATCTGGCGGAGCTTTATCTGGTTTTATGTAT 119032 28 100.0 32 ............................ GTTACTAGGAGTCATTAAATAAGGTAGTTTCG 119092 28 100.0 32 ............................ ATAGCTTTTAAAGATGATTACGAACATCTCAA 119152 28 100.0 32 ............................ ATATTAATCATCTGATTCATATAAGTAACATA 119212 28 100.0 32 ............................ CGATAACGTCTACACTAATCTCTTGCATAGTA 119272 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGGCTGATGCTTATGTGGCAAAATTTGAAGTCAACGAATTAGAAGCGGCCATTCACAGTGCGTTGAATTCAAAGAAAACACTGAATTTGTAGCAGCCATGGTATTTCTGCGGCCTTTTCCTTAATGCTGTTATTGGCAGGAACGGGCCGACATATGCGATGGATTGAATTACACCGTTTGCCATAGACACTTTGTAGCATCAACAATACCGCTGCCGGAGCAGGGTATCTTCCTACCCAGTAAACAAAATTAACTAACCCTCAAACGCGTGATTAGTGTCTCCAGCGCGATTATCAGCGCGGCGGCTAATAGTCCGCCGTGGCTGGTAAGAGTAATGCAGAACGATGACGCCACCATTTTCGGTTTTTAACCCTCTTTTTTCGGTAAATTCTAACCTATTGATTTTATATAGGATTGGCCGAGCGCATTAAAAAAGCCTTTTTTGCTCTCTCAGCCTATTTTTCTTTTATCATCAGAAAGATATGTGTATTGTATAACA # Right flank : ATTTGAATAATGGTTAGGGAGCATTTCATGGTATTAATATTGTGCAGGTCTATATTCTGGCAATAAATGGTCACTCACTGGTTAGATAAATCTCGACAGTGAAAGCTGTTATGAATATTGCCCTAAGGAGATTGTTGGTTATGGATAACAGGATCCACTCCACGGATTTGAAAACCATTTTACATTCCAAACGTTCAAATATTTATTATTTAGAATATTGCCGTGTATTGGTTAACGGGGGTCGGGTTGAATATGTCACCGATGAAGGTAAACAATCTCTTTATTGGAATATCCCAATAGCGAATACCACCGTCATTATGCTCGGAACTGGGACATCGGTGACTCAAGCTGCCATGCGTGAGTTTGCCCGAGCAGGAGTCTTAGTCGGTTTTTGTGGTGGCGGTGGGACTCCGCTTTTTGCGGCTAATGAAGTTGAGGTCAATGTCTCGTGGCTAACGGCACAAAGCGAGTACCGACCAACCGAGTATCTGCACGACTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 128108-130402 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWJL01000004.1 Yersinia pekkanenii strain CIP110230T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 128108 28 100.0 32 ............................ GCGTAATGAGCAGGAAAACGCCCTGCATAACG 128168 28 100.0 32 ............................ CAGGGCGGCGGGCATGTTGGCAATGGCCGTCA 128228 28 100.0 33 ............................ CCCCTGACAGGCCCGGCAGCGACCAGCGGAGTG 128289 28 100.0 32 ............................ CCGCCAGTTTATCCAGGCAGCCATTGACCAAC 128349 28 100.0 33 ............................ ACATGAAGATACAACAAGAATAACTCGATTTAA 128410 28 100.0 32 ............................ ATCACATGCTGAAATTGCAGCACTAGCTCGAA 128470 28 100.0 32 ............................ AATCTGGATTATGCAGGGTTAGTCAGTGTGCT 128530 28 100.0 32 ............................ AAAGTTATAGCCAGTATCAAAGTCATTTCGCC 128590 28 100.0 32 ............................ CTAATGAATGGGCGGTTCCTGTTTATGCGTTT 128650 28 100.0 32 ............................ TTAAAATAATTCTTGACGTATTGCACTGATGT 128710 28 100.0 32 ............................ GCAAAGTGTCTCAACTGTGATTAGCATAGTTC 128770 28 100.0 32 ............................ TGTGCCACTTCTCAGAATGTCGCCAGCCGATT 128830 28 100.0 32 ............................ TTCAAGCCGTCATGCCTGAAGGTGTTCAGCCG 128890 28 100.0 32 ............................ TGACTACTTAATGTTTGGCAAAGGTGTCGGTA 128950 28 100.0 32 ............................ CTCTTGACAAAATAAATAAAAGGTATGTTGGG 129010 28 100.0 32 ............................ AACACTGGCGACCAGTCAGCGGCAACCAACAC 129070 28 100.0 32 ............................ ATCAATCCACATGCCGCGCTGGGCGTCCCGCA 129130 28 100.0 32 ............................ TTCACAATCCAATTCAACCACTCGGCCATCAC 129190 28 100.0 32 ............................ TTGATGCATAGACAATTCATGGATAGTAAGCT 129250 28 100.0 32 ............................ ATTTTGGTTGCAAAGTTAGCGTGAAATGCAAT 129310 28 100.0 32 ............................ AAAATCCAGGTAGAATCTTTTCTCGCAATTAA 129370 28 100.0 33 ............................ GTAACCGCGCTTTAGCGCATCACCGGCAAAGTT 129431 28 100.0 33 ............................ GGCAAAGAAAATCAGCGGTATCAGTACCAGTGC 129492 28 100.0 33 ............................ CGATCGGGAGTCTGTTGATACGGTCATGGAAAA 129553 28 100.0 32 ............................ CGTTCACCCGGACATAAGCCACGCCGGTATAT 129613 28 100.0 32 ............................ ATAAGGCGCTTCACCTAATGCTTAATAACTCT 129673 28 100.0 32 ............................ AAAATGCTTGAGAATCTAGATTAATACGTTTA 129733 28 100.0 32 ............................ AAGGTGCTGATAGACACGACCCTAAAAAGAGT 129793 28 100.0 32 ............................ ATATCAAGGAAGTGATAGACACGATCCTAAAA 129853 28 100.0 32 ............................ AAAGTTAAAACAATTATCTTTGATGAGTTTAT 129913 28 100.0 194 ............................ ATTAGCTGATTCATATAAGTATGGCTCTCTGAGAGAGCCCCTGTTTAAGAGAAAGCCTTCTGACTTTAAGTATGGTTTCCATGCACGGCATCCAAGGAAATCTCCGTAAAAACGGAGAGTTTATCAATAATCAGGGTGGTGCACTTTTACACCATAATTCCCCGATCCCTTGGTCTACTTTTGCACAATATTTA 130135 28 89.3 32 ACA......................... AGACTGCTCATCACCAGCGTATTGAGTGGCCG 130195 28 100.0 32 ............................ TGTCAAAGTCGGGAAGATGTGTGAATCGCTTA 130255 28 96.4 32 ...........C................ TCCTAAACGAAATAATGACTCTAATTCTGGTA 130315 28 96.4 32 ...........C................ ACTCCAATCATCATTAACATGAGTTCTTTCGA 130375 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 36 28 99.4 37 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTGATTTAGTTGAATTGCAGTCTGCTGGCTGGTTAAAAGGTTTGCGGGATTATTGTGAGTGCAGTGAAATTTTTCCGATACCGGCAGTCGTTAAATATCGTGTAATCCGCCGTGTGCAAGTGAAGAGTAATGTTGAACGGTTACGTCGTCGTTCGGTCAGTAAAGGGTGGTTAACGGAGGAAGAAGCGAGGTTACGCATTCCAGACAGCCATGAACAGCAGTGTAATCTGCCTTTTTTACGGTTAAAAAGTCTGTCCAGTGCACAACACTTCCTGCTATTTGTTGAGCAAGGTAAGTTGCAGGAAACGCCGGTTACAGGAGTGTTTAGTGCTTACGGTTTAAGTACCAATACTACCATCCCCTGGTTTTAACCCTCTTTTTTCGGCCAACTCTAAGCTATTGATTTTATACAGGGTTGGCCGAGAGTATTAAAAAAGCCTTTTTTATCAATCCAATTGATTTTTATTTTATAATCAATAAGTAATGTATATTGTATAACG # Right flank : ATTGGGATGCAAAAAAACCTCCCTGAGCATGTGCAGAGGAAGGCTATTGATAACAAACTACTTTTACACGCTCAGGTCTGGTGCGAACGCAGCCGAACGACAAAATTAAAACAAAAAACCCGCCTAGTGACCTAAGCGGGTTTCTTTAAATTTGGCTCCTCTGACTGGACTCGAACCAGTGACATACGGATTAACAGTCCGCCGTTCTACCAACTGAACTACAGAGGAATTGTGTGAACGAGGCGAATAATAGCGAGGTATGCCGAACATGTCAAAGGGGAAACAGTAAATTTGGATTGTTTGCTTAGAGTTTGTGCAACTTATTGAGATTTTTGACTTTTAGCTCAATATTTACCCAAAAAATAGCAGTCGGCATCTCATTAAAGGGCGGGCTAGCCTGTTCCACGCTGCCCGCCGACGTGCTTATTGAGGTGTATCTGTCAGTATAAACATGCCGTATGGATGGATTTGCAGGTAATAACTGTCGCCAAGGGCCGGTT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //