Array 1 44880-45945 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYET01000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_2615 NODE_22_length_62655_cov_3.19908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44880 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 44941 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 45002 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 45063 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 45124 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 45185 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 45246 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 45307 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 45368 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 45430 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 45491 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 45552 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 45613 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 45674 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 45735 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 45796 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 45857 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 45918 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62081-62655 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYET01000022.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_2615 NODE_22_length_62655_cov_3.19908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62081 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 62142 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 62203 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 62264 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 62325 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 62386 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 62447 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 62508 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 62569 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 62630 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 108908-107963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYET01000018.1 Salmonella enterica subsp. enterica serovar Montevideo strain BCW_2615 NODE_18_length_108945_cov_3.27879, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108907 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 108846 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 108785 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 108724 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 108663 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 108602 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 108541 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 108480 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 108419 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 108358 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 108297 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 108236 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 108175 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 108114 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 108053 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 107992 29 93.1 0 A...........T................ | A [107965] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGGTTTATCTCTCCGTTATGTGTCGGACACCAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //