Array 1 338173-337125 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUW010000010.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 338172 28 100.0 32 ............................ CGACACCAAACGTCCACGGATGGACGATCACT 338112 28 100.0 32 ............................ ATGGACAGGTGCGGGTGATGCGACATTAATAT 338052 28 100.0 32 ............................ TTGCCCAGCAGGTCACCTACAACGATTTCGCG 337992 28 100.0 32 ............................ CCGAGCTTTCATGATTAAAAAACGCATGGATG 337932 28 100.0 32 ............................ TGAACTAGTAGTAGCCCAGCGATTAGACGTAG 337872 28 100.0 32 ............................ TGTTGCCCCGGTTCAGGCCCGGGGAATTTGAT 337812 28 100.0 32 ............................ GTTGAGGTTTAGGCTTAACAGCTTATTAGCGT 337752 28 100.0 32 ............................ TTCAACCTCAACTAGCAATTTAATGAAACGAG 337692 28 100.0 32 ............................ ATTGAGACAGCAACTGCCCCTGGAATGGTTTC 337632 28 100.0 32 ............................ ACATCGTTCAGCTTCTTGCGAGTACGGGCTAT 337572 28 100.0 33 ............................ GTCTGGCGTCAATTCCACTGAGCAAAAAATCAT 337511 28 100.0 32 ............................ GATCGATTTAGCCCAACTCGCGATTAGCCTAA 337451 28 100.0 32 ............................ GGATTGTTTAACACTCTGACGTGGTGAGTTTT 337391 28 100.0 32 ............................ AACGGGAAAATATACGACGCCCAAAAATATGG 337331 28 100.0 32 ............................ TCGCATCCATTCGTACGGGTCAGATATAGAGT 337271 28 100.0 32 ............................ ACGGCTCAGGTTAAAATCACCTGGGTTAAAGT 337211 28 100.0 32 ............................ GGCACCGTGTAAGGCTGGCTTGCGGGTTCAGC 337151 27 82.1 0 ...........TG.........-...TG | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAAACGACACCAAACGTCCACGGATGGACGATCAC # Right flank : CTTATCAGAATGCGTCGCTGGCACAACGCATTTCGGGAGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGATGTTCGCACAGGTAGATTCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGAATCATCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGACGGTAGTACGGTTCATCCTCCGGCACTAAACGATTAAAGAAACTCTCGAAATCTTGCCGCACCGTGGGATCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACGTGCATCAGCCCAACGTTTATCTGGCGCAGAGCGATAATCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCAGATTTCATATTGTGCCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 115841-116108 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUW010000002.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 115841 28 100.0 32 ............................ ATCGTCGGGATCGACGTATGAACCGGTACCCA 115901 28 100.0 32 ............................ TACTACGGCCATCACGACCCATTGCAAAAACT 115961 28 100.0 32 ............................ GCTCGCGCACATGGCGACAAGACCCCGACCTG 116021 28 100.0 32 ............................ ATGCGCGATTTTCTCAATGCGAAAGAAGAGAT 116081 28 82.1 0 ...........AGC......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTCAATATTGGCAGGCGTATGAAAACGAAGAGCTGATACTTTCTCCCATGCCCGGCGAACTGTATGTTTCCATGCTGGTAGGCGCAGGCATGACCGCCATCGGCGTTGTGAAATATCGACACGCGCGGCGCAACCCAGTCGCTCCACGTCCAACGAGTGCTAAAACAGTCGCCGCATTGTTGCTGATCGCGCTTTATCTGGCGCTTCCGCTACATCTCTACCTGCGTGAACCTCTCCCCTACTGCGCTTTCAGCCCCAGCGGTCAGCAGTTAACGGTATGTCTGGGAGACAATGACGAGCGGATTATTGTGGAGTGATGGGGATTGAATCAGATGGGGTGGAGAATAAAATCTGTAGCGAGTTTCTTCTCAACCCTTTTTTAACGGTTAGTCGTAACTTACTGATTTTTAACCACCCACAACCGAGACTATAAAAAAGGGTTTTTCTGAAAAACAGAGTATTCTCTTTAATAATCTGATAATTAGCATAAAACTTTTACG # Right flank : AATAAAACGCCGCAAAAATCAGCAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCGCAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGGTTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCATAACATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAATAAGAGCG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 127165-122456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUW010000002.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 127164 28 100.0 32 ............................ ATCTGGCGGATACATAAACTGCCAGACAGGGT 127104 28 100.0 32 ............................ ACTACGGTTAAAACAAAGAATATAATGGATAT 127044 28 100.0 32 ............................ ATTTCAAACGGCGCTGATATCGTGCAGGGAAA 126984 28 100.0 32 ............................ TCAAAATATGGGCGCTGAAAACCTGCCTCTTA 126924 28 100.0 32 ............................ TGCCTGAGTGTTGGCCAGTTTGTTGCGGTAGA 126864 28 100.0 32 ............................ TAAAGTAGACGAGTAATGTAGTTGGTTCCGTC 126804 28 100.0 32 ............................ GCAAAGATAAAAGCAAAGGCCGACGCGCTGGT 126744 28 100.0 32 ............................ ATTGTGCTTATACGTGGTGAGCAATCCATAAT 126684 28 100.0 32 ............................ CGGAAATTCTCGATGCGGTATTGCGTGGAGAG 126624 28 100.0 32 ............................ ACTCTTCACCGGCCTGCACGCCGTCCACGGCC 126564 28 100.0 32 ............................ GCTCTTTAAAAACTTGCTTGCTCTTACAGTTA 126504 28 100.0 33 ............................ GTCATAATACCCATGCGCAGCAACGGAATTTTT 126443 28 100.0 32 ............................ GCTGCGGCTTGCATTGCCATTAGAGCGGGCTG 126383 28 100.0 32 ............................ ATATTAGGCCACGGTTTTAAAGTGAAAGGGGA 126323 28 100.0 32 ............................ AGAAAAAATCTTTGGGGTTTTCTCCCCGCGTT 126263 28 100.0 32 ............................ ACCGACAAAGGGCTCAAACAGCCGATCACCCT 126203 28 100.0 32 ............................ AGATTTATAATGGTTCGACAGTTCCATTTGAA 126143 28 100.0 32 ............................ GTGGATATTAGGAGGCGTCGGCGGGTTGTGGT 126083 28 100.0 32 ............................ AGAATATCCAGCAGCAATTGAACGCGAATAAC 126023 28 100.0 32 ............................ GCTCGGTTTTGTTTGGCTATTTGTTCAGGCGA 125963 28 100.0 32 ............................ TCAATGCCGACCACATCATTAATTTCTTTCAT 125903 28 100.0 33 ............................ CAGCGTCGTTGCCCAGAAATTCTTATCGCCATC 125842 28 100.0 32 ............................ GTCAACCCCGCTATTTGTGTTTGAGCGTCCAG 125782 28 100.0 32 ............................ ATTGAATCGAAAGGAGTCGCCCGCCTAGCCCC 125722 28 100.0 32 ............................ CGAAGACAATAACGCTTTTTACACGCCTTTTT 125662 28 100.0 32 ............................ GATAACACTTACGCTAATTTGCAGGCGGGCAA 125602 28 100.0 32 ............................ TATACCCACACGTCCCAGTGAGTCAACGGGTT 125542 28 100.0 32 ............................ TCAAGGGAACTGCTGTTGGGGTAGTCAAGAAG 125482 28 100.0 32 ............................ GTAGAAGAGCTGCCAGCGAAACAGCAGATCGT 125422 28 100.0 32 ............................ CGTCGAATTGTTGACGCTGTTAACGCCTGCTC 125362 28 100.0 32 ............................ ACATGCCTGATATGGACGCCATTCAGCTCCAA 125302 28 100.0 32 ............................ TCGGATACGATTTTCTCGCGGAATTGGACAGC 125242 28 100.0 32 ............................ TTCAGGGAGTTCATCGACACCGATAAACCAAC 125182 28 100.0 32 ............................ TGGTCACGGCTGGGGGCATGGCCATATCGAGT 125122 28 100.0 32 ............................ AGGCTGGGTGCGCGGGTAACGCCGGATGCATG 125062 28 96.4 32 ..............T............. AACAACAAGAACAACGCAGAATGCAACATGTC 125002 28 100.0 32 ............................ GTGTAGCTGAGGCGCAGGTAGCGCTCCAACTT 124942 28 100.0 32 ............................ TTGTTGTCAGCTCCAGCCGTGGGATATGGGCT 124882 28 100.0 32 ............................ ATCAGGAAAGGATCAGGGATCAGGGAAAGGAA 124822 28 100.0 32 ............................ AGAAACTTCAAGCGCTGAGTGAATTCACCCTG 124762 28 100.0 32 ............................ TCATTGACTGGCGCGTCACCCAACCAGGTTCT 124702 28 100.0 32 ............................ GCGCTTGATCATGTCGTTAATTGCAAATGCAA 124642 28 100.0 32 ............................ TGAGAAATCAACATTCCATCATCATCGCAACA 124582 28 100.0 32 ............................ TCAATGCTGCCGATGAGTTGGTTCAGGACGAG 124522 28 100.0 32 ............................ ATGAACCCGGCACATGCGGCCGACGCGTCAGC 124462 28 100.0 32 ............................ TCCGGGCTGCTTTTTTTATGCCTAAAAGAGAG 124402 28 100.0 32 ............................ GTCTACTTTCCGGCCTTCGGGGGTTCTGCTGA 124342 28 100.0 32 ............................ AATCCTCACCGGCCTGTACGCCATCCACCGCC 124282 28 100.0 32 ............................ TGTAAACGATTCTTCGATAACGGCGTACTGGG 124222 28 96.4 32 ...........T................ AAAGGTAAATTCCGGCACCCATGCCAGAATCT 124162 28 96.4 32 ...........T................ TTCGGGTGTGATTTCTCGCTGGGATGGAACGG 124102 28 96.4 32 ...........T................ ATTTTATCGCCGCGGTGGAAGGGATTCCCCGC 124042 28 96.4 32 ...........T................ TGCGCTGTCCGTTCAGGTAACAGAAAAGGGCG 123982 28 96.4 32 ...........T................ GGGAGACCAAAGTGAATGCTTTGGGGTGTGGT 123922 28 96.4 32 ...........T................ AGCGATTCTGGCGATGTGTACTGTCCGGTTAA 123862 28 96.4 32 ...........T................ ATTTCACGCAGCGGCCCCAAATCCTCGCCAAC 123802 28 96.4 32 ...........T................ CTCGACCGTTGCGGCTTCGCCGCTCATTGCAC 123742 28 96.4 32 ...........T................ CGCAGTTTGTCCCAGATCAAAGCAACCCACAG 123682 28 96.4 32 ...........T................ TTGTATCCAGTGCTCAGGCCACGCAGCATTGA 123622 28 100.0 32 ............................ ACATTGGCACGCTGTAGCGCAGCGCTTCCAGC 123562 28 100.0 32 ............................ AGTCGGTACAAACGTTGTGATTGGGTTTCTTG 123502 28 96.4 32 ...........T................ GGACACCTCCGGCAAGTTGGTCGTGTTTATTG 123442 28 92.9 32 ...........T.C.............. TGTATCAGGATGCAACGCGCAGCGATGAGTTA 123382 28 92.9 32 ...........T.C.............. GGACGCTGGGACGCGCATGCCGCCGCCAATAT 123322 28 100.0 32 ............................ GTCATATCAGCATGTCGCGGATCAGTGCGAGT 123262 28 100.0 32 ............................ AGCGCGGAGGTGATGCACGGCCTGATTAATGG 123202 28 100.0 32 ............................ ATGCCAACAGGCTTGTTGGTGCGCATCAGTGA 123142 28 96.4 32 ...........T................ ATCCGCTATTTGGATAGCATGGAATTGCAAGA 123082 28 96.4 32 ...........T................ TGAAGGCGCTGACTGTGATTTTATGCGCTGAC 123022 28 96.4 32 ...........T................ AGTTGGGCGCGGAGTGATAGCAGTTCAGAGGC 122962 28 100.0 32 ............................ ACCATCATCAGCGACCCACGACGACAAGCAGC 122902 28 92.9 32 ...........C.C.............. GCGAGTAGACAATCTCGCCGTCGTCATCGTCC 122842 28 96.4 32 ...........C................ GCATGAAGCTGGTTGCCAATGGCACCTGTTTT 122782 27 89.3 32 ..........C-.C.............. GTCACGGATAATGCACATCGGCGTAGTGTGGG 122723 28 92.9 32 ...........C......C......... GTTATAACTCCAGCCGTGGCGCTGAACGATAG 122663 28 92.9 32 ...........C.C.............. TTGCGTATAATCTTGCAGTTCGTGATGAAGCA 122603 28 100.0 32 ............................ CATCCGCTGCCAAGTGCTTTAGATACCTGACC 122543 28 92.9 32 ...........T.C.............. TTAACGGTATTTATGCGGATAGAGATAAATTT 122483 28 75.0 0 ...........TGC......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 79 28 98.3 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAAGTGCCAGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGATTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGAAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATCGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAGTCGCAGGCTAACTATTTGATAAGAAGAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATAGTTTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAAGATTAAAAATCAATGAGTTACGAAAGGGCGGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACG # Right flank : CGGGTTTAAGCGCTATTGTCTGGCTATTATTGAGGTAGCGTTGCGCCAAGTGCTCAATGCGTTTACCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGAAAAATTGTGGATTGGGTATTATTAATATTTTAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAGGGAGTGAGTAACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAACCCTAATGATTCGTGGAAAACGGCGATATTTGGCTGTGCCGATCCTACT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 135747-136075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUW010000002.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135747 28 92.9 32 ...........T...A............ ACCTGACATCGAAACTCGACCCTAAGCGCCGC 135807 28 92.9 32 ...........T.....T.......... TCTACGAATTCTAGGTCAGGTGCCGAGATAAC 135867 28 100.0 32 ............................ TAACAATGTCATTACCCAATTATTTGCGTGGG 135927 28 89.3 32 .C.........TG............... TGTGAAGATGCCTGAATTTATCAAAACGGGGT 135987 28 100.0 32 ............................ CACGCGCCTTGATTCAACGCCGCTTTTTGTGT 136047 28 89.3 0 ...........T.C..........C... | A [136070] ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.1 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCACTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACACAGGTTTCCGCGTGTAAAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCTGAACGGTTGCGTCGACGCTCAGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGCATTCCCGACGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTACAAATTAAAAGCTTGTCCAACGGGCAAATGTTTTTCGTGTTTGTGGAACATGGCCCGTTACAGGACGCCCCCGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTCTGGCGACCGGCTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGAGAAAAAATCCATATTCTCTTTCACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ATATCAGGACTTGCACTTCGCCAGACATCATCCGGTCAGACTGACCGATTAGTTAACCCAATCTTCCAACGTCAGCCCCTGCACTCTTTCAAACTCTCTTAGATTATTGGTAACCAATATGGCCTTAGCGCTGATGGCATGACCAGCGATGGCCGTATCATTTGGGCCAATAGGCGTGCCTGCGGCGGCTAACGCAATTTTGATTTTCGTAGTGGCGTCTACTGCTGCGCTATCCCAAGGTAACACCGCATCGAGCCGACGACAGAAAGCATCGACTAGTTGCATATGGCGTGGCGAGGCCTTTTTTCCAACCGCCCCGAAACGCATTTCAGCGTAAGTGATGGCAGAGACCACGATCCGATCACGCCGCAATGTGCACTGCTGTAGCTTGTCAATCACCGCTGTCGGGTGTTCACGCATAATGAAGGAACATATATTGGTATCCAGCATGAACAAGCGACTCACAGTTCGAATCTCCCCTCTTCGACTACATCCTGACG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 137065-137629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFUW010000002.1 Pectobacterium polaris isolate Pectobacterium polaris IPO_3842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 137065 28 100.0 32 ............................ ACGATGGGCGTACCGTCTTATTTGCTGCCACA 137125 28 100.0 32 ............................ AACAGGCCAATTTCCCAACGCTTGATGGCGTT 137185 28 100.0 32 ............................ ATACGGCACACCAAAATATTGCACTGCTAATA 137245 28 100.0 32 ............................ ATATACGACGAGCGCAAGTTAGTTTCATAGAT 137305 28 100.0 32 ............................ ATCCAGCCCCGTCCAGTACCATGATAATAGCG 137365 28 100.0 32 ............................ AATGAAAACCGTGAATTATTTGGTTCCCGCAA 137425 28 100.0 32 ............................ GTGATAATGAATCGTCATGCGGCGTACTCCAG 137485 28 100.0 32 ............................ CGACACCAAACGTCCACGGATGGACGATCACT 137545 28 100.0 32 ............................ CGACACCAAACGTCCACGGATGGACGATCACT 137605 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAATGAATGCCAATTGGGTTTAACCGGACGCAGCATGATGGTATCCCCCTCACGCACGATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTCATATAAAATTCAGCCAGCCACTTACCATTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAATCTCTCGATTGCATATTCCTAGCATATGCAGATACCTAGTATAGGCCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCACCGTAACTCATTGATTTTTAATTTTGATTACCTGCCCTGATAAAAAAGGGTTTTTCGGGAAAAATGTTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //