Array 1 362171-363724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPP01000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SALH-394-2 NODE_224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 362171 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 362232 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 362293 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 362354 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 362415 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 362476 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 362537 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 362598 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 362659 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 362720 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 362781 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 362842 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 362903 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 362964 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 363025 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 363086 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 363147 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 363209 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 363270 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 363331 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 363392 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 363453 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 363514 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 363575 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 363636 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 363697 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 379857-381333 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPP01000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SALH-394-2 NODE_224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 379857 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 379918 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 379980 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 380041 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 380102 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 380163 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 380224 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 380285 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 380346 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 380407 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 380468 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 380529 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 380590 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 380652 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 380755 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 380816 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 380877 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 380938 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 380999 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 381060 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 381121 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 381182 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 381243 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 381304 29 96.6 0 A............................ | A [381330] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //