Array 1 487246-488679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062254.1 Pectobacterium parmentieri strain QK-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 487246 29 100.0 32 ............................. TGAATAAATAACAGAAAACTTTCGAAAACGAG 487307 29 100.0 32 ............................. GGATTAATTTTCATTGAGGATTAAACAATGGC 487368 29 100.0 32 ............................. CAGATCGTTAGTATTGGAAAAGAAATAGCTAT 487429 29 100.0 32 ............................. TATCTACTGAAACGACAAACCCGATTTCAGTG 487490 29 100.0 32 ............................. AATTTTCAACTCTTATGTCATTTGTTACTGGT 487551 29 100.0 32 ............................. CATTTACCCGACAGGAATAAATAATATGGCGA 487612 29 100.0 32 ............................. CAACTTGCTTAGCTAAATGCGCTAGCTCGTCG 487673 29 100.0 32 ............................. CTACGGTAAATCCATGATTAGCCGCGCGGACA 487734 29 100.0 32 ............................. CAATTGCTGGCAGAAACCAAATCCGGACGCCA 487795 29 100.0 32 ............................. CCCCCTGTAATGCGCGTCAATCTCGCTTTCCG 487856 29 100.0 32 ............................. ATAATCATTACGTCTCGCTTGGCATATTCTAT 487917 29 100.0 32 ............................. TCCGGGTATGCACATAGTCATTTTCTCCTGTG 487978 29 100.0 33 ............................. CATTCATCAGGCAGCGTGCGCGGCAGCTCTACT 488040 29 100.0 32 ............................. ATTCAATTTCCGCACTGATCGCTGAGGTCGTG 488101 29 100.0 32 ............................. GCGAGGATGGCAGTGATGCCCATACGCCGCCC 488162 29 100.0 32 ............................. GGCTAACGCGCACCTATTTTTCTACACCGTCA 488223 29 100.0 32 ............................. GTGTTCATTGCGTTGTAGCTCCTTTGGATAGT 488284 29 100.0 32 ............................. GAACGTAGACCTGTCGCCGTTAATCCATCCAG 488345 29 100.0 32 ............................. ATTGTTATGGGTTAACAGTAGAGGATTTGGGC 488406 29 100.0 32 ............................. TGCGCCTGAATTGGCTTTAAGCGGTGTTGCGA 488467 29 100.0 32 ............................. TACATAATCACAGTCGGCGTACAGCAACGCAT 488528 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 488590 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 488651 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTATTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTTCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGTGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTAATGGCGTGGGCGACGAATACGGAGTCCGGTTTTGAATTCCAAACCTGGGGTGAAAATCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTCTACCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGGCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTTATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATGCTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGTGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 490456-491155 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062254.1 Pectobacterium parmentieri strain QK-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 490456 29 100.0 32 ............................. ACGCCCCTGATTTGAGCGAATCATGCTGATTC 490517 29 100.0 32 ............................. CCGTGCTCAATCGGTATTGCGTGCGTGTTCTC 490578 29 100.0 32 ............................. GAGGAATCAAAGGCATCTGTCGCGCTGCATAA 490639 29 100.0 32 ............................. ATCACCTGTTAGCGGCTGCTTTTCAGGATCTA 490700 29 100.0 32 ............................. GCTCGCTGTTCGTGGTTGGTGCGAGGCCAAAA 490761 29 100.0 32 ............................. TTAATAAAAAAAGAGCAAGTGAGGGGATACCC 490822 29 100.0 32 ............................. ATAATATAAAAACATTGAGAGGCTATGATGTA 490883 29 100.0 32 ............................. CCCCGCAATTACACTTATGCGCCGATCTGGAG 490944 29 100.0 32 ............................. TACGGATGATTTAGCGAAATTAACAACAATTA 491005 29 100.0 32 ............................. CTGTGCTCAGTGCGTCGAGAAATACCGCTGAT 491066 29 100.0 32 ............................. ATTGGGGTTATCTGAAAGAACGGCCAGCCTAA 491127 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACTTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTATCCCGAATTCTAAATGGTGAGCGTACACTAACGGTTGATCACATGAGCGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTGTTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTCATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTTTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTACCACGCGGGATTCATCTTTAATCCGACTGAGTGTTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGCACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGGCGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3978940-3979988 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062254.1 Pectobacterium parmentieri strain QK-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3978940 28 100.0 32 ............................ TGAGCCAGCAATCAGCAACCTACGCGGCAAGC 3979000 28 100.0 32 ............................ GGGTGTAAATGCCGAAACAGCCCCCGCAGTTA 3979060 28 100.0 32 ............................ GCGAAATCCCACCGCTCAAATAAAAAAGGCTA 3979120 28 100.0 32 ............................ GCCCGGTGCCTGCGGCGGTGCCAGTACCACAC 3979180 28 100.0 32 ............................ GAATGGCCCAACTACAGCATATGCAGTTCCAG 3979240 28 100.0 32 ............................ TGGATCAACAGCGCCGAGTATCGACCAATCAT 3979300 28 100.0 32 ............................ TAAATGAAACAGAGGGTGTATTTACTGAGCCA 3979360 28 100.0 32 ............................ TTTGCAGTGTATGACCAGTTAGCAACAGAACT 3979420 28 100.0 32 ............................ GTTCAGCCATCTTCTTTCTCCTGTTTCAGTAA 3979480 28 100.0 32 ............................ AACTCCCCCCGGCGGTCGAGTGACTTGCTCTA 3979540 28 100.0 32 ............................ TCATCGACCACGTCGCAGCCCTTGAGCAGCAG 3979600 28 100.0 32 ............................ GCGCCCAAGCAATGTCGGAACGACGCCAAAAA 3979660 28 100.0 32 ............................ AGACGACGCCGACGAGGTAAAGCACATCATTC 3979720 28 100.0 32 ............................ AAGCCAGCCGTATTGAACAGCACTGATCCCAC 3979780 28 100.0 32 ............................ AAATCGGGATTGCTGAAATCCAGAAATCAATC 3979840 28 100.0 32 ............................ ATCTGCATCAAAATAGTTAGTACTGGTATATC 3979900 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 3979960 28 85.7 0 A...........GC..........A... | G [3979985] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCCAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAAAACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : ACAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGACTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAATCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAGACGACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3998077-4001525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062254.1 Pectobacterium parmentieri strain QK-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3998077 28 100.0 32 ............................ AGATTGAAGGCAATGGATCCAGAAGAAGCACT 3998137 28 100.0 32 ............................ AAGAATGAAAACGCGGTCAGGGTGAACGCTTA 3998197 28 100.0 32 ............................ CGAATTCGTCTACCACAGTTTCGGTTAGACTG 3998257 28 100.0 32 ............................ GCTGGCGCGGGGAAGTATGACTCAGTCGTCCG 3998317 28 100.0 32 ............................ GATAATAACAAACTTAGGCATGTTATTTATCC 3998377 28 100.0 32 ............................ CGCATTTCGGTGATGACCCCGTGAAAGTTTTC 3998437 28 100.0 32 ............................ GCGTCATGGAGAGCCTGAAAAAAGATGGTTTT 3998497 28 100.0 33 ............................ CGCTTGCGCAGAAGTCCAATAAAAATTGGTCGA 3998558 28 100.0 32 ............................ CGTCGCTGTCCCGCTGTGTTAGCTATGACCCG 3998618 28 100.0 32 ............................ GTTGGGCTACAGCACATGAGCAAGCTAGGAAC 3998678 28 100.0 32 ............................ ACTAACACTCCAATAATCGGTGGGGAGCAGAT 3998738 28 100.0 32 ............................ GCCAGATTATCCAGTTACGCGACCAAGAAACC 3998798 28 100.0 32 ............................ GCACCCAGATTGTTGGTTGGCGCTTGGCATTC 3998858 28 100.0 32 ............................ TAACTGGTGGCAATACTCGATCTTGTGGATGC 3998918 28 100.0 32 ............................ AGCACAGAGGCGGCAAAGCTTATATCCAGCCT 3998978 28 100.0 32 ............................ AGATAGCGCGGATATCAAACCGAATCCAGCTA 3999038 28 100.0 32 ............................ AAGCAATGTCGGAACGACGCCAAAAAAAGGCG 3999098 28 100.0 32 ............................ ATCACATCGGTTATCGATAGTGAGTCACTTGC 3999158 28 100.0 32 ............................ AGAACACAAAAAATCGACAGCGAATTCAGGTA 3999218 28 100.0 32 ............................ TCGCAATAGCGGGGCTTATTTTTGGAGATGAA 3999278 28 100.0 32 ............................ GCGCATGTGTCGTCGGCTACGAAGGTCAATCA 3999338 28 100.0 32 ............................ TTCTCTGGTGAGACCATTCCACCATTCAGCCA 3999398 28 100.0 32 ............................ TGAGTGGGCTACATTTACGCACTATCCCTGGC 3999458 28 100.0 32 ............................ AGCAACGTTAGATACAGCGCAGACAGTTACCA 3999518 28 100.0 32 ............................ TCGCAAAAATATCTTGTTTCGCTATTTCGCGG 3999578 28 100.0 32 ............................ CGATGCGATGCCGTTCGCACAGAACCGGCTGA 3999638 28 100.0 32 ............................ AGTGTGCGTAAGCGGAGAAGTTCCCCACCTTT 3999698 28 100.0 32 ............................ AGCCATTTTATGACAGGAACAGCCATAGAATT 3999758 28 100.0 32 ............................ AGCGCATCCTCAAGCGTCGGAACTGGGTCAAT 3999818 28 100.0 32 ............................ TGATAATCAACCGGTGTTCCACTAAACATAAA 3999878 28 100.0 32 ............................ AGTCCGACAAACAGCACCACCCGTTCAACCTC 3999938 28 100.0 32 ............................ ATTTGCCCTGCACTCTCTAGCCATCGATACAT 3999998 28 100.0 32 ............................ AGCAGAGAAGACCTTAAATCTCTTCACATCAT 4000058 28 100.0 32 ............................ TACGGGCAGAGCTGATCGCCAAGTTTGGCCGC 4000118 28 100.0 32 ............................ GCACAGGGCGGCGCGAATGTTTCCCGCGAACT 4000178 28 100.0 32 ............................ AACTAAATCCAGAATTCGCTTTAAATATTTGG 4000238 28 100.0 32 ............................ GGGTTAAATGTCACAGCGAGATTATACGTACC 4000298 28 100.0 32 ............................ GAATTTGCTGCATCAGGCAACAGCATATCAAA 4000358 28 100.0 32 ............................ AATATCCCGATCCTGCTCGTGCTGGTGAAACA 4000418 28 96.4 32 .............T.............. CGCTTGCTGTTTTGTACCTGATGGCATCAGGA 4000478 28 96.4 32 .............T.............. AGTACGTGAAAGATAACGCCCCACCACTGCCT 4000538 28 96.4 32 .............T.............. TCTATACACTTGAAACTGATTACCCAAATCCA 4000598 28 96.4 32 .............T.............. AAAGCTTACCGGAATCGAGTTTTGACCAATGA 4000658 28 96.4 32 .............T.............. ATATAGGCTCAATGATGAATTGTTAGATACCC 4000718 28 96.4 32 .............T.............. TCAATCGTCCCGTCAATCCACCCCTCATACTG 4000778 28 96.4 32 .............T.............. AGCCTGCTAACGATGCGATGGGCGATCTGACC 4000838 28 96.4 32 .............T.............. GGGGAAATTAATCCTTTCTGAGGTAAAGAAAG 4000898 28 96.4 32 .............T.............. GTATAGGCTCAATGATGAATTGTTAGATACCC 4000958 28 96.4 32 .............T.............. ACGCTACAGGTTCTTTCGCCGCCCTGTCATAA 4001018 28 96.4 32 .............T.............. CGATACACGAAAACCCAACGGTGATGATGGCC 4001078 28 96.4 32 .............T.............. CACTTAACGCAGTCGCTATCGCAGCAACCGGC 4001138 28 96.4 32 .............T.............. TCAATACGCTACAGCAGACAGTCGCGACACTG 4001198 28 96.4 32 .............T.............. GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 4001258 28 100.0 32 ............................ ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 4001318 28 100.0 32 ............................ TCTAGCCAGTTATGAATTTCAACCGACTTTGA 4001378 28 100.0 32 ............................ ACTGTTATTTCATACGGCACATCAGGTGGCAG 4001438 28 100.0 32 ............................ AGATCACAGTGAACAGGAAAACGATATTCAGC 4001498 28 78.6 0 ............G.......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 58 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTGTTGATGCCAGCGAAATTAATCGCAGACTAATTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATAGCTTGGGAAAATGATGGCTACAAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCTACA # Right flank : TTTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //