Array 1 11579-12217 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIO01000120.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_2052 NODE_120_length_12253_cov_4.8251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11579 29 100.0 32 ............................. TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 11640 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 11701 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 11762 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 11823 29 100.0 32 ............................. CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 11884 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 11945 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 12006 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 12067 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 12128 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 12189 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TCACTTCAATAAGTCCTGGCGGTAGAGATCGGAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-553 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXIO01000092.1 Salmonella enterica subsp. enterica serovar Muenchen strain BCW_2052 NODE_92_length_15570_cov_4.6991, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 96 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 158 29 100.0 32 ............................. ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 219 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 280 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGGG 341 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 402 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 463 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 524 29 96.6 0 ............T................ | A [551] ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCCAGTCAGGGGCGCGATATTGCCGCCGTGTTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //