Array 1 18314-17948 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMS01000010.1 Neisseria lactamica strain M37058 M37058_HUY4067A164_cleaned_ctg_8618, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18313 36 100.0 30 .................................... TCACGGAGACATGGAAATACCTTTGGATAT 18247 36 100.0 30 .................................... GCCCTAGCGTATTTGGATTGGCTAGCGTCA 18181 36 100.0 30 .................................... ACCTTGCCATTTTAATTGATAGCAATCACC 18115 36 100.0 30 .................................... GCTGAAACCCATATCCATCAAGAATTTCAG 18049 36 100.0 30 .................................... GCAAAATTTAGACAATCGCTAACTTTTACT 17983 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTATTTTCAATTTTATGTTGAACTTTAAAGCAGTTTCGCAGTGCTGAAATTCCGCCCGAGCCCTTAAACCATACACGGCAGATGCCGTTCACAAAGGCGATGTGCAACTTTGCCCGAAACAGTCCGCCTTTACCCTTACAAGGACGAACAGCAAAAGACGGAACAGCCCGTACAGTCCGCGAAAGCGGAAAAACCCCAAGTTTTAGCAATGGCTGCGGCAAAATAGAAAACCGCCCTTAATAAGGCGGTTTTGGCGGTCTATTGACTTAAAAGCACAATCAAGGCTAGAATAACCCCAGCATCAATCGTAACAGTCAATTGCAAATTGCCTACCTTAATAGAGATTTGCATTTGGATGTTTCCTGTAAGTTTCAAAACTTGGCAGGAATGCAAAAATCCCCTTGTTCTCAGCTTGGGGATTTTTGTTTGTCCCCGCCGATTTTTTAAAATCCGCGCCTCTCGCGCCCTGAACCTATCTCATAAAGTTCCTTATATATTA # Right flank : ACCCCAACGGGAAATCCTTATTATGTAAGGGTTTCCCGTTTTATTTGTTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 74655-72638 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMS01000007.1 Neisseria lactamica strain M37058 M37058_HUY4067A164_cleaned_ctg_8612, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 74654 32 100.0 34 ................................ CGGTGTAAAGTCCCTTCCGCGCCAGCTTTTGAGG 74588 32 100.0 33 ................................ CGGTATGACATCACGAAGCGGGGCGGACATGAT 74523 32 100.0 35 ................................ AATGAGTTGAAAATGAATTGTAAACATGCTATTGT 74456 32 100.0 33 ................................ TTGGATATGCATATGAAGATTAGCGCCCTGCGT 74391 32 100.0 35 ................................ CGAAATTCCTTCTAATATTAATCAGGTAATCAAGC 74324 32 100.0 35 ................................ CGGGTCAAGGTAGCGTTGCAACGTGTACATTTCTG 74257 32 100.0 34 ................................ AAAGGTGGTGATATGGACAAATTGGCAGGTAAAT 74191 32 100.0 35 ................................ TATATATTGTAACAGCTTGACCCATTTTGCCAACG 74124 32 100.0 33 ................................ CAATGTATCGAACAAACCGAAAACGTAGTTAAT 74059 32 100.0 35 ................................ CATTTCGGATACAGGCTCTGGGCAACTATCACGAA 73992 32 100.0 34 ................................ GCTTCACAAGGAAAGAGCGGCTATCTTCATTCAG 73926 32 100.0 32 ................................ CTTTAAATTTAATGGTATTTAGATTATTTACC 73862 32 100.0 35 ................................ TACGATTAACGGCGACTTGCAGTATATGCGCTCGA 73795 32 100.0 33 ................................ CAGTCGTTGAACCGCATGATGTTTGCCAGATGT 73730 32 100.0 33 ................................ GATGTTTCCGGAGAACTTTTTAACGCCAATGAT 73665 32 100.0 36 ................................ TATTATGAAAGCCATTATGACGCGCTTATACAAGCG 73597 32 100.0 33 ................................ TTGGGAGCATTGCGGGAAAGACAAATCTATCCG 73532 32 100.0 34 ................................ CCCCTCAACGAACCGAAAACGACAAAAGCCGACA 73466 32 100.0 34 ................................ CGTTATTTGTCGGTTTGTCTTATAAAATGTTGAG 73400 32 100.0 35 ................................ AATCCATTCAAAACAAAACAGACACACCGAAAAAT 73333 32 100.0 34 ................................ CAAGTTTGTCCGCGTTTATGAGAAAGGTAGGCAG 73267 32 100.0 36 ................................ GTTACCATCGAGCATAAGACCACGACGCGTCAGGGC 73199 32 100.0 34 ................................ GATAAAACATTTTCTGTATTTTGATTTGGAGTAA 73133 32 100.0 33 ................................ CGCCCAGCATCACAAGATTCAATTTGTGCAAAT 73068 32 100.0 34 ................................ ACAGCCGCGCCGTTACTTGTTTTCAGGACATGAA 73002 32 100.0 38 ................................ GGCGTCAAAAGCGTAGTTGGTGTTGATAACGGCGTTGT 72932 32 100.0 34 ................................ AAACGCGGCAAGGTCAAGATGATGACGCTGTCCG 72866 32 100.0 34 ................................ ATCATAAAACAAAATATTAGTGATGTATCCACCA 72800 32 100.0 34 ................................ AGACGGTATTTTTGACGGCAAATTGATTCGTCAG 72734 32 100.0 33 ................................ AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 72669 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 31 32 100.0 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTTAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATCAAATATGGAAAATAGTAGGGATGTGTAAACTGAATTATTTCAGCATTGCCTTGCTGCCGTTGATGTTGGCAGCCTGCGGCGGTAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGCCAAGGCGGAATATTGCTTTTTATAACAAAGACGGTACGGAAATTCCCGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //