Array 1 298652-296822 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNDW01000001.1 Vibrio parahaemolyticus strain F8_2 F8_2_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 298651 28 100.0 32 ............................ CTCGCGGTAAAGGCTGGGGTGTCGATGTTAAG 298591 28 100.0 32 ............................ GTAAATGCTGACGTTGGCATTACGTACCGCAT 298531 28 100.0 32 ............................ ATTACCTACGACTTGCTCAATGACTAATGTGT 298471 28 100.0 32 ............................ CGTAAGCCCACTGTTTACTGCCAACGTTCAAA 298411 28 100.0 32 ............................ CGCATATATGAATGCAGATGGTGAGGTAGTTT 298351 28 100.0 32 ............................ TCCCTAGCTTCGCTGACAGAGCGAATGTTAGC 298291 28 100.0 32 ............................ TAAAGTGGGGTAACGATGCTGGAATGCGAGAA 298231 28 100.0 32 ............................ TCAACGCGGAAGAACTAAAGCGATACAAAACC 298171 28 100.0 33 ............................ AAATTAAATTATAAGCACGTAAAGGTAGCTCAC 298110 28 100.0 32 ............................ TACTAATAACGCCAGTCGTTCTCAATTCAAAC 298050 28 100.0 32 ............................ TTATCGTTTACTCTGGGATAACTGGGAACGTT 297990 28 100.0 32 ............................ TAGTGTAGCCTTAGCCTCGGCTATCTTCTTAG 297930 28 100.0 32 ............................ GTCGCGTAAAATCAGCGGCAAATGGCGTTGCA 297870 28 100.0 32 ............................ TTTCTGTAGGCCATTAGCTTTTCGTCAATGGT 297810 28 100.0 32 ............................ TTCCGTTAAGCGACAAAACTGTGCCAGACAAG 297750 28 100.0 32 ............................ AGTAACAACAAAAATTACTCTGCGTACAAAGC 297690 28 100.0 32 ............................ GTGGCGCTTCAATCAATATCCTTGTTTGATAA 297630 28 100.0 32 ............................ ATTTCCTCATCGGCCTTGCAATATTTGCATTG 297570 28 100.0 32 ............................ AACTAGCGCGCTAACGCTTACTCAAATCAAAA 297510 28 100.0 32 ............................ TCAAAAAGGTGAGCCCGTGTCGTTGTCACTGT 297450 28 100.0 32 ............................ ATTCTCGCCAACTACCCAAACATTGACGAAAT 297390 28 100.0 32 ............................ AAAAGCCCGACGCGCCTAGCTGGATAAAAGTC 297330 28 100.0 32 ............................ CCGGAGCTCCGCCAGCTTTGCCCTCGTTACCC 297270 28 100.0 32 ............................ GCAACAAAATAGACTTTATGATCGCTTGATGG 297210 28 100.0 32 ............................ TTATCGTTTGTTATGGAGTAATTGGGAACGTT 297150 28 100.0 32 ............................ ATCACTCAAGCTCTAAGGGGAAACAGTTAGCG 297090 28 100.0 32 ............................ AACCGCGCGCGCCTTTGATTTCTTTAATCATT 297030 28 100.0 32 ............................ CTAAGCGATGTGTTTCCTCGATTACACATCGC 296970 28 100.0 32 ............................ ATGCGCATTTTAAACCTAGCGCTATCAAAGGT 296910 28 100.0 33 ............................ CAAAGAGTTCATTATCTTGCGCAGTGTCACCTG 296849 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGGCTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCATCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : GATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCATAAGCGCGTTTGTATGATGTTGCGGCTAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGCTAATAGAGTTTTAGTGTTGCTCAAGTCATCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //