Array 1 177506-180037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWE010000002.1 Erwinia amylovora strain Ea04-03 Ea_04-03_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177506 29 100.0 32 ............................. AAATCATCACCAACGCGCTGAAAGCAAAAGGG 177567 29 100.0 32 ............................. CGCTGGTCCCTTTTTTGACGCCTGCGGAGCCT 177628 29 100.0 32 ............................. TACTGGGCCACTTTTAATGATGTTGTAATAAC 177689 29 100.0 32 ............................. CACTAAAAAGTGCTTCGGAACAAAATCAGCCA 177750 29 100.0 33 ............................. CGCAGGAGCTACACGACCAGCGGAAGGCCGAAC 177812 29 100.0 32 ............................. ATGGCAACGCTGAAGTTTGCTCATATGAATAT 177873 29 100.0 32 ............................. CTCAGTATGATGCAGAAGATTCTGGAATCAAT 177934 29 100.0 32 ............................. GTGATGGCGGATAACCTGGGCGGCGATCTTAA 177995 29 100.0 32 ............................. CTGCTGAGTCGCGTCACGCATGAGAAGCAGGC 178056 29 100.0 32 ............................. GTACACTATGACTGATGTAACTGATTCATCGA 178117 29 100.0 32 ............................. GCGTTAGTTGCTGAAGGTATCAAGTCTGGCCG 178178 29 100.0 32 ............................. CGGAAATACCGATGCGCAGGATATTAAAAGAT 178239 29 100.0 32 ............................. ACGTTTCGATCGCTGATGATATCTCATCGTTC 178300 29 100.0 32 ............................. GATGCAGCGACTTCAGATACTGCAAACGAGTG 178361 29 100.0 32 ............................. GAACTGGATTTGTACCGTGTTCTGGTCGCCAC 178422 29 100.0 32 ............................. TTGTCAGGAACATCAACAATCAATCCGCGTAG 178483 29 100.0 32 ............................. TTAGTAGACAGATGGCAGGAATTGGAAAAATT 178544 29 100.0 32 ............................. TGGTTTCTGCCACTACCCACCCTATCTAATGA 178605 29 100.0 32 ............................. ACCTGTTTGATGTAGAGCCTGAGAGAAACCAG 178666 29 100.0 32 ............................. ATGGCGCGAGGAAATTTTTATCATTGGGGGAT 178727 29 100.0 32 ............................. TTATCGACGACCACTATACGGAAATGCAGGAA 178788 29 100.0 32 ............................. CTAAAACCTGGTTGAGCCTGTCTGCGGTTTTT 178849 29 100.0 32 ............................. TCTGCCATCACCAACAACAACGCTTGGCATGT 178910 29 100.0 32 ............................. TGGTCAGGGGCGAAGTGCGCGTATCTCATTGT 178971 29 100.0 32 ............................. GTTATTGGGGCAACTCAAACCGGTAAAGGCGT 179032 29 100.0 32 ............................. AGCAGCAGCACGGTACGTGACAGAATTGTTTC 179093 29 100.0 32 ............................. GCAGCAGGTATTTATTGAGAGCGCGATTGCAG 179154 29 100.0 32 ............................. CAAATATCGCAAAAAACCAACTCATTGAGATG 179215 29 100.0 32 ............................. GCGGGCAATGCTATTGGCGTAGCCCTGAATGA 179276 29 100.0 32 ............................. TTGGCTCAACAGAACAACAACGCAATCCAGCT 179337 29 100.0 32 ............................. CAGGGCAATATCCGTTGATTCGCTCATATCAA 179398 29 100.0 32 ............................. CCAGCTGCGCTCGATGGTGCGTCCGTCCGTGG 179459 29 100.0 32 ............................. GTCGTATCATCACTGATGAGCTGCATATTTTT 179520 29 100.0 32 ............................. TGACAGAGTAACGGTTAGGTTTAGACCTAAGC 179581 29 100.0 32 ............................. CTAAACGCCGGATCCTCTAGCAGGGTGTAAAT 179642 29 100.0 32 ............................. ATCTGAATCAGGATTTGCGTGAGGCTGATATA 179703 29 100.0 32 ............................. CCATCAATAACCGCGATGGCAAATCGCTTCAG 179764 29 100.0 32 ............................. CTTTTGCCCGGTTGCGAAGTCCTGGAACTGGT 179825 29 100.0 32 ............................. TAATGGTTAAAGTGAGCGGTGGCGGAACGACC 179886 29 93.1 33 ...........................GC ATTACAGGCATCCGCTGAGACTAACACCCTTCC 179948 29 100.0 32 ............................. CAGATAAAACGCTGGGTCGTCAGCCCGGAGTT 180009 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCTTGCCTTATTCGAGTGACTTCAACCCTTACGGGCGTCCGGTCGGTTGCTCAATGGCAACGATAATCAGCGAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCAATAGTATTTCCTTGATATAAGAGCGTGCGCGCAGCATGTGGATGCTTTTGGGCTACTCTTGGCGGCCGCGTACCGGTCGACAAAAACCAACCCGGTTTACAGGCCGGTTTTTTTTTCGCCTGCACGCTGCCATTTCCGCTATATTCAAGATGTTCACTAAGCCGTTTACCCCTTATATCTGGCCGTGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAGAGTGGAAAAAAGTTGGTAGAATTGTAAGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCAATTGTACTGGTCTGTCGCTCAACCATGTCACCGATGCAGAGGTGTCTCCAACACTCATGGGCCGGAGAAACCAATGCATACCCCACTGACGGAGCTTATGACATCCGGTTGGGGCATGATCAACGGGGGCATACGATAATCAGATTTGTCCCCCTTCCCGGCTTACTGGCAAGAAGAATATGCAGATGCACCGGGCGCTAAATAGCCGTTCAAAATAGTAGATCACTTTGAGGGCACACAACCCGGATTATGCGATCTTATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCGATGCCGTTCATAGCATCAATACCTCGTAGCAAACGCCGCCGGATGCAGAAAACCCTTCACAAAACCCGGGATAAAAATCATGCTCGCAGGCTTACCGCCATGCTGATGCTGCATCGTGGAGACCGCGTCAGCAACGTTGCCAGAACAGCTTTGCTGGGGCCGTTGTTCCATTGGCCATTAGATTAACTGGTTTACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209803-212209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWE010000002.1 Erwinia amylovora strain Ea04-03 Ea_04-03_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209803 29 100.0 32 ............................. GTCAGCCAGCATTAAATCTGAATCGCTACCAG 209864 29 100.0 32 ............................. ATGAAGTTCAAATACAAAAAAAGCGGCTTATC 209925 29 100.0 32 ............................. GCCATGCCGGTAATCATGATACTGATATGCGT 209986 29 100.0 32 ............................. GGATCGGATTCGGTTTGGAGGCGCATTGCGGT 210047 29 100.0 32 ............................. CTGCCTGCTCTGTGGAATAATCCAGAGCGTCC 210108 29 100.0 32 ............................. TAGATGGTCCTTTATATGCCACAGTCAGAGTA 210169 29 100.0 32 ............................. CATGCGCAAGACCAGGCTAATGCATCCCAGCA 210230 29 100.0 32 ............................. ATTCTGGAATCAATAAATCAGATCCACGACTT 210291 29 100.0 32 ............................. ACAGGTGCTCTAAACACACGTCCGGGTGCCGG 210352 29 100.0 32 ............................. CAGTAATTGCTGCGGGGCTGAAAATGAAAAGG 210413 29 100.0 32 ............................. TTAAATGCGGAAACCGATTTTGCTGATTCGAT 210474 29 100.0 32 ............................. TGGTCATCGAGGATGGTTTATTACTCGCAAGA 210535 29 100.0 32 ............................. GCGACAGCATGTGGCCACGCATTCAATCTGGT 210596 29 100.0 32 ............................. TTTCCTCTGCCATCTCCTCTATTACATACCGG 210657 29 100.0 32 ............................. TAGGGATATTTGTTGAGTCAGGCTATTAGCAA 210718 29 100.0 32 ............................. CCCTGTGATCGCATTCGTCGCACCGCCCTGGA 210779 29 100.0 32 ............................. GCGCATCTGCGCACGATGAAAGTTAAAGGGTA 210840 29 96.6 32 .....................G....... TTAGCGCCCTTCTAAGCCGTAGGTCACAGGTT 210901 29 100.0 32 ............................. TCGCTGCTTTGTCTCAATGCCAACGCCGATTA 210962 29 100.0 32 ............................. CCTAACCTGGACTTCAACAACACAGATTGGGC 211023 29 100.0 32 ............................. AAATCGATTATTTCATCGTTCCTGTTACAAGT 211084 29 100.0 32 ............................. GATATCATCATCAAAGTCTGCGGGGGGCGTAT 211145 29 100.0 32 ............................. CGCCAAACTGGCGATGCAAACCAACAGACTCC 211206 29 100.0 32 ............................. CGTTGCGTGAGCAAAACGGTCTGGCAGAAGCA 211267 29 100.0 32 ............................. TACTGCGACAGCGTAACGTTAGCCGGTAACAA 211328 29 100.0 32 ............................. TTGGGGTGAGTAAATACGACTCTGTTAGAGCC 211389 29 100.0 32 ............................. CCGCATGTTCTTTTAACATGGCTTTAATATTA 211450 29 100.0 32 ............................. CGGCACACCCGCCTGAACTAATCAGCTCGCCC 211511 29 96.6 32 .................A........... GCAGCTGGCAATGATGACGAATGAGGATAGAC 211572 29 100.0 32 ............................. GGGGAATAAAGATATTAATCAGGATTTGCGTG 211633 29 100.0 32 ............................. TGCAGGCGCTGCAGGAGGGGGAGAACGTCACC 211694 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 211755 29 100.0 32 ............................. TCATAGTATTCCATCACTACGACACCCGTTAC 211816 29 96.6 32 ............................C AATGCCAGTACGAGCGCGCCTTAAATATCTGG 211877 29 100.0 32 ............................. TTGGCCACCAACAACAACGCATGGCATGTTTA 211938 29 100.0 32 ............................. CCAGAGGACAACTTTCCGCCTTTTCTCTGCGT 211999 29 93.1 32 .................A..........C AGGTGGCGGAATACGGCAACGAGTGGATAACT 212060 29 96.6 32 ......T...................... CGGATCACCTCTTCGCCCAGCCAGCTGTTCAG 212121 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 212182 28 79.3 0 ...........AC..-A....C......A | ========== ====== ====== ====== ============================= ================================ ================== 40 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATTGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCTACCCCCGCAGGATACCCAGCCGGTTGCCATCCCTGAACCTCAGTCTCTTGGCGATGTCGGGCACCGGAGTTCGTAATATGAGTATGCTGGTAGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGTGTGCGGGAAATGATTTGGCAGCAGCTGAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCGGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATGATATGTTTAATGCCAGCCCGGCCTCGGTATTGCCTCGCCGGACTGAGCCTGAATACATTACCGGCAAAAGAGGGTAACACTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGGCTGGTCGAATATCGCCCTGGGTGCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTAAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAATCCCTCTTTGGCTGGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //