Array 1 30724-30084 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZX01000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C1633 NODE_36_length_53781_cov_120.240256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30723 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 30662 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30601 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30540 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30479 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30418 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30357 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30296 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30235 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30174 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30113 29 96.6 0 A............................ | A [30086] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48470-46856 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZX01000036.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C1633 NODE_36_length_53781_cov_120.240256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48469 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 48408 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 48347 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 48286 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 48225 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 48164 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 48103 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 48042 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 47981 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 47920 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 47859 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 47798 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 47737 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 47676 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 47615 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 47554 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 47493 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 47432 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 47371 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 47310 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 47249 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 47188 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 47127 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 47066 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 47005 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46944 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46883 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //